UHGV-0156012

Genome information

Genome length 47,356 bps

CDS count 66

Completeness 96.83% (high-quality)

geNomad score 0.9575

Prediction confidence Confident

Genome information
Genome ID	UHGV-0156012
vOTU ID	vOTU-010633
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_469391
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.83% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9575
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.03
Jumbo phage	No

Genome content
Genome length	47,356 bps
GC content	42.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	89.78%
Average CDS length	647.86 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0156012_1	eggNOG-mapper	1262914.BN533_00057	NA	NA
UHGV-0156012_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0156012_2	PHROG	phrog_95	integrase	integration and excision
UHGV-0156012_2	UniRef90	UniRef90_E8LBZ4	Resolvase, N-terminal domain protein	NA
UHGV-0156012_2	eggNOG-mapper	626939.HMPREF9443_00357	overlaps another CDS with the same product name	NA
UHGV-0156012_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0156012_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-0156012_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0156012_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0156012_2	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0156012_4	Structural annotation	PF06114	NA	NA
UHGV-0156012_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0156012_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0156012_5	UniRef90	UniRef90_A0A6N2ZQ00	Transcriptional repressor DicA	NA
UHGV-0156012_5	eggNOG-mapper	1262914.BN533_01956	Helix-turn-helix XRE-family like proteins	NA
UHGV-0156012_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0156012_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0156012_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0156012_6	UniRef90	UniRef90_UPI0002626FF0	helix-turn-helix transcriptional regulator	NA
UHGV-0156012_6	eggNOG-mapper	558169.AGAV01000008_gene736	NA	NA
UHGV-0156012_10	eggNOG-mapper	642492.Clole_2795	NA	NA
UHGV-0156012_10	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-0156012_15	Pfam	PF01476	LysM domain	LysM
UHGV-0156012_15	COG	COG1388	LysM repeat	NA
UHGV-0156012_17	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0156012_17	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0156012_17	UniRef90	UniRef90_A0A316SJK4	SMC_N domain-containing protein	NA
UHGV-0156012_17	eggNOG-mapper	1121342.AUCO01000012_gene1723	nuclear chromosome segregation	NA
UHGV-0156012_17	PADLOC	AAA_15	NA	NA
UHGV-0156012_17	Pfam	PF13175	AAA ATPase domain	AAA_15
UHGV-0156012_17	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0156012_17	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0156012_18	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0156012_18	UniRef90	UniRef90_UPI001C05F550	recombinase RecT	NA
UHGV-0156012_18	eggNOG-mapper	563192.HMPREF0179_00147	NA	NA
UHGV-0156012_19	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0156012_19	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0156012_19	UniRef90	UniRef90_UPI0013E0D4F3	MBL fold metallo-hydrolase	NA
UHGV-0156012_19	eggNOG-mapper	926561.KB900623_gene748	Metallo-beta-lactamase superfamily	NA
UHGV-0156012_19	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0156012_19	dbAPIS	APIS066	NA	NA
UHGV-0156012_19	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0156012_19	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0156012_21	PHROG	phrog_11269	NA	unknown function
UHGV-0156012_21	eggNOG-mapper	1121428.DESHY_20121___1	NA	NA
UHGV-0156012_22	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0156012_22	UniRef90	UniRef90_A0A212LXZ1	NA	NA
UHGV-0156012_22	eggNOG-mapper	1122973.KB904232_gene344	NA	NA
UHGV-0156012_22	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0156012_24	eggNOG-mapper	1235790.C805_00061	NA	NA
UHGV-0156012_26	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0156012_26	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0156012_26	UniRef90	UniRef90_I8TUK3	ParB-like partition protein	NA
UHGV-0156012_26	eggNOG-mapper	394503.Ccel_3306	Belongs to the ParB family	NA
UHGV-0156012_26	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0156012_26	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0156012_26	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0156012_26	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0156012_27	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0156012_28	PHROG	phrog_5984	NA	unknown function
UHGV-0156012_28	eggNOG-mapper	1235835.C814_01168	NA	NA
UHGV-0156012_28	Structural annotation	PF19561	NA	NA
UHGV-0156012_30	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0156012_30	UniRef90	UniRef90_A0A7X2XHL8	NA	NA
UHGV-0156012_30	eggNOG-mapper	1347392.CCEZ01000043_gene417	NA	NA
UHGV-0156012_30	Pfam	PF06356	NA	DUF1064
UHGV-0156012_30	Structural annotation	PF06356, NF033179	NA	NA
UHGV-0156012_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0156012_31	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-0156012_31	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0156012_33	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0156012_33	UniRef90	UniRef90_A0A7C6PPI8	ParB N-terminal domain-containing protein	NA
UHGV-0156012_33	eggNOG-mapper	1123288.SOV_2c03720	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0156012_33	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0156012_33	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0156012_33	COG	COG0863	DNA modification methylase	NA
UHGV-0156012_33	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0156012_34	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0156012_34	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0156012_34	UniRef90	UniRef90_A0A3A8ZMY9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0156012_34	eggNOG-mapper	1122917.KB899683_gene4786	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0156012_34	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0156012_34	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0156012_34	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0156012_34	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0156012_34	Structural annotation	PF00145, MF_02237, TIGR00675, COG0270	NA	NA
UHGV-0156012_35	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0156012_35	PHROG	phrog_8660	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0156012_35	UniRef90	UniRef90_UPI000F53DBFC	HNH endonuclease	NA
UHGV-0156012_35	eggNOG-mapper	240292.Ava_4561	PFAM HNH endonuclease	NA
UHGV-0156012_35	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0156012_35	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0156012_36	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-0156012_36	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0156012_36	UniRef90	UniRef90_A0A7C8GRI9	Terminase small subunit	NA
UHGV-0156012_36	eggNOG-mapper	864563.HMPREF9166_0572	transposase activity	NA
UHGV-0156012_36	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0156012_37	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0156012_37	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0156012_37	UniRef90	UniRef90_A0A3C1INY8	Terminase	NA
UHGV-0156012_37	eggNOG-mapper	883156.HMPREF9282_01236	Phage terminase large subunit (GpA)	NA
UHGV-0156012_37	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0156012_37	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0156012_37	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0156012_37	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0156012_39	PHROG	phrog_21	portal protein	head and packaging
UHGV-0156012_39	UniRef90	UniRef90_A0A3C1INQ6	Phage portal protein	NA
UHGV-0156012_39	eggNOG-mapper	883156.HMPREF9282_01238	Phage portal protein, lambda family	NA
UHGV-0156012_39	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0156012_39	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0156012_39	COG	COG5511	Phage capsid protein	NA
UHGV-0156012_39	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0156012_40	KOfam	K06904	NA	NA
UHGV-0156012_40	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0156012_40	UniRef90	UniRef90_A0A3C1INU1	Mu-like_gpT domain-containing protein	NA
UHGV-0156012_40	eggNOG-mapper	883156.HMPREF9282_01239	Caudovirus prohead protease	NA
UHGV-0156012_40	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0156012_40	COG	COG3087	Cell division protein FtsN	NA
UHGV-0156012_40	Structural annotation	PF19821, PF04586, MF_04119, TIGR04387, TIGR01543, COG3740, COG4653	NA	NA
UHGV-0156012_41	PHROG	phrog_122	head decoration	head and packaging
UHGV-0156012_41	UniRef90	UniRef90_A0A316S7V6	DNA breaking-rejoining protein	NA
UHGV-0156012_41	eggNOG-mapper	1437448.AZRT01000082_gene4003	NA	NA
UHGV-0156012_41	Pfam	PF09956	NA	DUF2190
UHGV-0156012_41	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-0156012_41	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0156012_42	Structural annotation	PF13856, COG5614	NA	NA
UHGV-0156012_43	eggNOG-mapper	910314.HMPREF9220_0616	NA	NA
UHGV-0156012_43	Structural annotation	PF05069, TIGR01725	NA	NA
UHGV-0156012_44	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0156012_45	PHROG	phrog_290	minor tail protein	tail
UHGV-0156012_45	UniRef90	UniRef90_UPI001032C993	phage tail tube protein	NA
UHGV-0156012_45	eggNOG-mapper	910314.HMPREF9220_0614	NA	NA
UHGV-0156012_45	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-0156012_45	Structural annotation	PF18906, TIGR02241, TIGR02126, COG5437, COG3498	NA	NA
UHGV-0156012_48	PHROG	phrog_30973	NA	unknown function
UHGV-0156012_48	UniRef90	UniRef90_UPI001032C687	phage tail tape measure protein	NA
UHGV-0156012_48	eggNOG-mapper	484770.UFO1_2454	nuclear chromosome segregation	NA
UHGV-0156012_48	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0156012_48	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0156012_49	UniRef90	UniRef90_UPI001032B7DB	phage tail protein	NA
UHGV-0156012_49	eggNOG-mapper	1280706.AUJE01000003_gene2251	NA	NA
UHGV-0156012_49	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0156012_50	PHROG	phrog_18	minor tail protein	tail
UHGV-0156012_50	UniRef90	UniRef90_UPI001032C9EC	NA	NA
UHGV-0156012_50	eggNOG-mapper	1280706.AUJE01000003_gene2250	Phage minor tail protein L	NA
UHGV-0156012_50	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0156012_50	COG	COG4672	Phage tail protein	NA
UHGV-0156012_50	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0156012_51	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0156012_51	PHROG	phrog_329	minor tail protein	tail
UHGV-0156012_51	UniRef90	UniRef90_A0A316S7W5	NlpC/P60 domain-containing protein	NA
UHGV-0156012_51	eggNOG-mapper	1273103.NM10_03081	NlpC/P60 family	NA
UHGV-0156012_51	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0156012_51	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0156012_51	Structural annotation	PF00877, NF008096, COG0791	NA	NA
UHGV-0156012_52	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0156012_52	UniRef90	UniRef90_A0A316S7W9	Phage-tail_3 domain-containing protein	NA
UHGV-0156012_52	eggNOG-mapper	1280706.AUJE01000003_gene2248	cellulase activity	NA
UHGV-0156012_52	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0156012_52	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0156012_52	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0156012_52	Structural annotation	PF13550, PF00041, PF16323, NF040662, COG4733	NA	NA
UHGV-0156012_56	KOfam	K14059	int; integrase	NA
UHGV-0156012_56	PHROG	phrog_1	integrase	integration and excision
UHGV-0156012_56	UniRef90	UniRef90_UPI000F0C2855	tyrosine-type recombinase/integrase	NA
UHGV-0156012_56	eggNOG-mapper	1123250.KB908441_gene1622	Phage integrase family	NA
UHGV-0156012_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0156012_56	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0156012_56	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0156012_57	PHROG	phrog_4105	NA	unknown function
UHGV-0156012_57	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-0156012_58	eggNOG-mapper	936573.HMPREF1147_1352	NA	NA
UHGV-0156012_59	PHROG	phrog_5867	endolysin	lysis
UHGV-0156012_59	UniRef90	UniRef90_A0A642A5A4	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0156012_59	eggNOG-mapper	1262914.BN533_01740	Peptidoglycan-binding domain 1 protein	NA
UHGV-0156012_59	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0156012_59	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0156012_59	Structural annotation	MF_04111	NA	NA
UHGV-0156012_62	KOfam	K18951	gp30; DNA ligase [EC:6.5.1.1]	NA
UHGV-0156012_62	PHROG	phrog_114	ATP-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0156012_62	UniRef90	UniRef90_A0A316SF06	DNA_LIGASE_A3 domain-containing protein	NA
UHGV-0156012_62	eggNOG-mapper	329254.Q2NPG1_9CAUD	DNA ligase (ATP) activity	NA
UHGV-0156012_62	Pfam	PF01068	ATP dependent DNA ligase domain	DNA_ligase_A_M
UHGV-0156012_62	Pfam	PF14743	DNA ligase OB-like domain	DNA_ligase_OB_2
UHGV-0156012_62	Structural annotation	PF01068, PF17879, MF_00407, TIGR02779, COG1793	NA	NA
UHGV-0156012_65	Structural annotation	PF13560, NF041951, COG1396	NA	NA