UHGV-0156172

Genome information

Genome length 50,704 bps

CDS count 87

Completeness 100.00% (complete)

geNomad score 0.9703

Prediction confidence Confident

Genome information
Genome ID	UHGV-0156172
vOTU ID	vOTU-046224
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_490142
BioSample	SAMN06110267
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9703
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.37
Jumbo phage	No

Genome content
Genome length	50,704 bps
GC content	39.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	87
CDS density	92.53%
Average CDS length	541.76 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0156172_1	PHROG	phrog_2319	NA	unknown function
UHGV-0156172_1	eggNOG-mapper	879630.E1A2C1_9CAUD	NA	NA
UHGV-0156172_2	PHROG	phrog_1233	NA	unknown function
UHGV-0156172_2	eggNOG-mapper	936375.HMPREF1152_1074	NA	NA
UHGV-0156172_3	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0156172_3	UniRef90	UniRef90_A0A843GSL4	Helix-turn-helix transcriptional regulator	NA
UHGV-0156172_3	eggNOG-mapper	693746.OBV_18020	transposase activity	NA
UHGV-0156172_3	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0156172_3	Structural annotation	PF07141	NA	NA
UHGV-0156172_4	PHROG	phrog_19695	NA	unknown function
UHGV-0156172_4	eggNOG-mapper	478749.BRYFOR_08558	NA	NA
UHGV-0156172_4	Structural annotation	PF19714	NA	NA
UHGV-0156172_5	PHROG	phrog_15594	NA	unknown function
UHGV-0156172_5	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-0156172_5	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0156172_6	PHROG	phrog_13589	NA	unknown function
UHGV-0156172_6	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0156172_7	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0156172_7	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0156172_9	PHROG	phrog_17180	NA	unknown function
UHGV-0156172_9	eggNOG-mapper	457424.BFAG_02437	NA	NA
UHGV-0156172_9	Structural annotation	PF14282	NA	NA
UHGV-0156172_10	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0156172_10	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0156172_10	UniRef90	UniRef90_A0A843GTR7	PBSX family phage terminase large subunit	NA
UHGV-0156172_10	eggNOG-mapper	431943.CKL_3280	Phage terminase, large subunit, PBSX family	NA
UHGV-0156172_10	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0156172_10	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0156172_10	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0156172_10	COG	COG1783	Phage terminase large subunit	NA
UHGV-0156172_10	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0156172_13	PHROG	phrog_443	holin	lysis
UHGV-0156172_13	UniRef90	UniRef90_UPI001EE0823A	holin	NA
UHGV-0156172_13	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0156172_13	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0156172_13	Structural annotation	PF16945	NA	NA
UHGV-0156172_14	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0156172_14	PHROG	phrog_1794	amidase	lysis
UHGV-0156172_14	UniRef90	UniRef90_D4KJC0	Negative regulator of beta-lactamase expression	NA
UHGV-0156172_14	eggNOG-mapper	665950.HMPREF1025_01587	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0156172_14	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0156172_14	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0156172_14	Structural annotation	PF01510, PF14627, MF_04111, NF008758, COG5632	NA	NA
UHGV-0156172_15	PHROG	phrog_64	portal protein	head and packaging
UHGV-0156172_15	UniRef90	UniRef90_A0A843GSM3	Phage portal protein	NA
UHGV-0156172_15	eggNOG-mapper	1121342.AUCO01000012_gene1700	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0156172_15	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0156172_15	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0156172_16	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0156172_16	UniRef90	UniRef90_A0A1C6BCQ4	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0156172_16	eggNOG-mapper	1582149.A0A0A8WEF5_9CAUD	Phage Mu protein F like protein	NA
UHGV-0156172_19	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0156172_19	eggNOG-mapper	1121871.AUAT01000035_gene1288	NA	NA
UHGV-0156172_20	PHROG	phrog_909	major head protein	head and packaging
UHGV-0156172_20	eggNOG-mapper	1158607.UAU_01759	NA	NA
UHGV-0156172_20	Structural annotation	PF02924	NA	NA
UHGV-0156172_21	PHROG	phrog_29	major head protein	head and packaging
UHGV-0156172_21	UniRef90	UniRef90_A0A843GQH0	Major capsid protein	NA
UHGV-0156172_21	eggNOG-mapper	756499.Desde_1083	Phage major capsid protein E	NA
UHGV-0156172_21	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0156172_21	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0156172_23	PHROG	phrog_4020	NA	unknown function
UHGV-0156172_24	PHROG	phrog_8435	NA	unknown function
UHGV-0156172_24	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0156172_25	eggNOG-mapper	1443122.Z958_05860	NA	NA
UHGV-0156172_25	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0156172_26	PHROG	phrog_7585	NA	unknown function
UHGV-0156172_26	eggNOG-mapper	1121342.AUCO01000012_gene1689	NA	NA
UHGV-0156172_26	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0156172_27	PHROG	phrog_6686	tail tube protein	tail
UHGV-0156172_27	UniRef90	UniRef90_A0A1C6KI12	S-l_SbsC_C domain-containing protein	NA
UHGV-0156172_27	eggNOG-mapper	1304880.JAGB01000002_gene2211	NA	NA
UHGV-0156172_27	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0156172_28	PHROG	phrog_6280	NA	unknown function
UHGV-0156172_28	UniRef90	UniRef90_UPI0005425395	esterase	NA
UHGV-0156172_28	eggNOG-mapper	445335.CBN_3078	NA	NA
UHGV-0156172_29	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0156172_29	UniRef90	UniRef90_A0A6B4JHH7	Phage tail tape measure protein	NA
UHGV-0156172_29	eggNOG-mapper	536233.CLO_0550	phage tail tape measure protein	NA
UHGV-0156172_29	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0156172_29	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-0156172_29	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0156172_29	COG	COG5283	Phage-related tail protein	NA
UHGV-0156172_29	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0156172_30	PHROG	phrog_36410	NA	unknown function
UHGV-0156172_30	UniRef90	UniRef90_A0A843GQH8	Phage tail family protein	NA
UHGV-0156172_30	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-0156172_30	COG	COG4722	Phage-related protein YomH	NA
UHGV-0156172_30	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0156172_31	PHROG	phrog_538	minor tail protein	tail
UHGV-0156172_31	UniRef90	UniRef90_A0A843GTT7	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0156172_31	eggNOG-mapper	428125.CLOLEP_01424	NA	NA
UHGV-0156172_31	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0156172_31	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0156172_32	PHROG	phrog_1220	head protein	head and packaging
UHGV-0156172_32	UniRef90	UniRef90_A0A514ZA40	BppL_N domain-containing protein	NA
UHGV-0156172_32	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0156172_32	Structural annotation	PF20747	NA	NA
UHGV-0156172_33	Structural annotation	PF09826, MF_03001, NF008258, COG4880	NA	NA
UHGV-0156172_36	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0156172_36	Structural annotation	PF04545, MF_00674, NF008895, COG2739	NA	NA
UHGV-0156172_38	PHROG	phrog_21718	NA	unknown function
UHGV-0156172_38	eggNOG-mapper	476272.RUMHYD_01952	NA	NA
UHGV-0156172_39	eggNOG-mapper	476272.RUMHYD_01953	NA	NA
UHGV-0156172_40	PHROG	phrog_16490	NA	unknown function
UHGV-0156172_40	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0156172_42	PHROG	phrog_20016	NA	unknown function
UHGV-0156172_42	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0156172_42	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0156172_42	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0156172_43	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0156172_44	PHROG	phrog_1233	NA	unknown function
UHGV-0156172_44	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-0156172_44	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0156172_46	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0156172_46	Structural annotation	PF07498, PF09465, MF_00749, NF037951, COG1862	NA	NA
UHGV-0156172_48	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0156172_48	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0156172_48	UniRef90	UniRef90_A0A843GN62	Toprim domain-containing protein	NA
UHGV-0156172_48	eggNOG-mapper	936375.HMPREF1152_0314	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-0156172_48	PADLOC	drt-UG29	DRT	DRT
UHGV-0156172_48	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0156172_48	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0156172_48	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0156172_48	Structural annotation	PF01807, PF13155, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-0156172_49	PHROG	phrog_14578	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0156172_50	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-0156172_50	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0156172_50	UniRef90	UniRef90_A0A843GPT9	DNA-directed DNA polymerase	NA
UHGV-0156172_50	eggNOG-mapper	1158345.JNLL01000001_gene729	TIGRFAM DNA polymerase III, alpha subunit	NA
UHGV-0156172_50	Pfam	PF02811	PHP domain	PHP
UHGV-0156172_50	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-0156172_50	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-0156172_50	Pfam	PF14579	Helix-hairpin-helix motif	HHH_6
UHGV-0156172_50	NCBIFam	TIGR00594.1	DNA polymerase III subunit alpha	NA
UHGV-0156172_50	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-0156172_50	Structural annotation	PF07733, PF02811, PF17657, PF14579, MF_01902, TIGR00594, COG0587	NA	NA
UHGV-0156172_51	PHROG	phrog_17812	NA	unknown function
UHGV-0156172_51	eggNOG-mapper	419610.Mext_0158	NA	NA
UHGV-0156172_51	Structural annotation	PF01242, TIGR00039, COG0720	NA	NA
UHGV-0156172_52	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0156172_52	UniRef90	UniRef90_A0A8E3AMT9	MazG domain-containing protein	NA
UHGV-0156172_52	eggNOG-mapper	1521187.JPIM01000066_gene2680	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0156172_52	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0156172_52	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0156172_52	Structural annotation	PF03819, MF_01020, NF001613, COG0140	NA	NA
UHGV-0156172_53	PHROG	phrog_761	thymidylate kinase	other
UHGV-0156172_54	KOfam	K01737	queD, ptpS, PTS; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]	NA
UHGV-0156172_54	PHROG	phrog_2389	QueD-like 6-pyruvoyl-tetrahydropterin synthase	moron, auxiliary metabolic gene and host takeover
UHGV-0156172_54	UniRef90	UniRef90_A0A2M9A8G5	6-carboxy-5,6,7,8-tetrahydropterin synthase	NA
UHGV-0156172_54	eggNOG-mapper	59374.Fisuc_2952	synthase	NA
UHGV-0156172_54	Pfam	PF01242	6-pyruvoyl tetrahydropterin synthase	PTPS
UHGV-0156172_54	NCBIFam	TIGR03367.1	6-carboxytetrahydropterin synthase QueD	NA
UHGV-0156172_54	COG	COG0720	6-pyruvoyl-tetrahydropterin synthase	NA
UHGV-0156172_54	Structural annotation	PF01242, TIGR00039, COG0720	NA	NA
UHGV-0156172_55	KOfam	K10026	queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]	NA
UHGV-0156172_55	PHROG	phrog_2076	QueE-like radical SAM domain	moron, auxiliary metabolic gene and host takeover
UHGV-0156172_55	UniRef90	UniRef90_UPI0005EB9228	putative 7-carboxy-7-deazaguanine synthase QueE	NA
UHGV-0156172_55	eggNOG-mapper	351627.Csac_0105	Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds	NA
UHGV-0156172_55	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0156172_55	COG	COG0602	Organic radical activating enzyme NrdG/QueE	NA
UHGV-0156172_55	HAMAP	MF_00917	7-carboxy-7-deazaguanine synthase [queE]	NA
UHGV-0156172_55	Structural annotation	PF04055, MF_00917, TIGR04508, COG0602	NA	NA
UHGV-0156172_56	KOfam	K01495	GCH1, folE; GTP cyclohydrolase IA [EC:3.5.4.16]	NA
UHGV-0156172_56	PHROG	phrog_2197	GTP cyclohydrolase	other
UHGV-0156172_56	UniRef90	UniRef90_R7N4B8	GTP cyclohydrolase 1	NA
UHGV-0156172_56	eggNOG-mapper	588581.Cpap_3434	GTP cyclohydrolase I	NA
UHGV-0156172_56	Pfam	PF01227	GTP cyclohydrolase I	GTP_cyclohydroI
UHGV-0156172_56	NCBIFam	NF006826.0	GTP cyclohydrolase I FolE	NA
UHGV-0156172_56	COG	COG0302	GTP cyclohydrolase I	NA
UHGV-0156172_56	HAMAP	MF_00223	GTP cyclohydrolase 1 [folE]	NA
UHGV-0156172_56	Structural annotation	PF01227, MF_00223, NF006826, COG0302	NA	NA
UHGV-0156172_60	eggNOG-mapper	665956.HMPREF1032_00638	NA	NA
UHGV-0156172_61	KOfam	K03553	recA; recombination protein RecA	NA
UHGV-0156172_61	PHROG	phrog_97	UvsX-like recombinase	other
UHGV-0156172_61	UniRef90	UniRef90_A0A843GSV7	RECA_3 domain-containing protein	NA
UHGV-0156172_61	eggNOG-mapper	1123500.ATUU01000001_gene371	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	NA
UHGV-0156172_61	Pfam	PF00154	recA bacterial DNA recombination protein	RecA
UHGV-0156172_61	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0156172_61	Structural annotation	PF00154, MF_00268, TIGR02012, COG0468	NA	NA
UHGV-0156172_63	PHROG	phrog_2506	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0156172_63	COG	COG1468	CRISPR/Cas system-associated exonuclease Cas4, RecB family	NA
UHGV-0156172_63	Structural annotation	PF01930, MF_03030, TIGR00372, COG5377	NA	NA
UHGV-0156172_68	eggNOG-mapper	1232453.BAIF02000002_gene1278	NA	NA
UHGV-0156172_73	PHROG	phrog_6466	DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0156172_73	UniRef90	UniRef90_A0A843GQD5	DNA_ligase_aden domain-containing protein	NA
UHGV-0156172_73	eggNOG-mapper	691965.D4P7L3_9CAUD	helicase activity	NA
UHGV-0156172_77	PHROG	phrog_2002	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0156172_77	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0156172_78	Structural annotation	PF21138, NF009630, COG2375	NA	NA
UHGV-0156172_81	PHROG	phrog_2250	NA	unknown function
UHGV-0156172_82	Structural annotation	PF10922	NA	NA
UHGV-0156172_83	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0156172_83	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0156172_83	UniRef90	UniRef90_A0A7X8ZT42	Ribonuclease H	NA
UHGV-0156172_83	eggNOG-mapper	351627.Csac_1903	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0156172_83	Pfam	PF00075	RNase H	RNase_H
UHGV-0156172_83	NCBIFam	NF001236.0	ribonuclease HI	NA
UHGV-0156172_83	COG	COG0328	Ribonuclease HI	NA
UHGV-0156172_83	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0156172_84	Structural annotation	PF14084	NA	NA
UHGV-0156172_85	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0156172_85	PHROG	phrog_14642	endolysin	lysis
UHGV-0156172_85	UniRef90	UniRef90_A0A173WLM4	Spore cortex-lytic enzyme	NA
UHGV-0156172_85	eggNOG-mapper	478749.BRYFOR_07508	Cell Wall Hydrolase	NA
UHGV-0156172_85	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0156172_85	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0156172_87	PHROG	phrog_2319	NA	unknown function
UHGV-0156172_87	eggNOG-mapper	1327935.A0A060AH02_9CAUD	NA	NA