UHGV-0156205

Genome information

Genome length 40,727 bps

CDS count 64

Completeness 99.90% (high-quality)

geNomad score 0.9734

Prediction confidence Confident

Genome information
Genome ID	UHGV-0156205
vOTU ID	vOTU-010639
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_482518
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9734
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.61
Jumbo phage	No

Genome content
Genome length	40,727 bps
GC content	57.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	92.61%
Average CDS length	592.17 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0156205_1	KOfam	K14059	int; integrase	NA
UHGV-0156205_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0156205_1	UniRef90	UniRef90_UPI0018A8CCD8	site-specific integrase	NA
UHGV-0156205_1	eggNOG-mapper	1408437.JNJN01000039_gene380	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0156205_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0156205_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0156205_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0156205_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0156205_2	KOfam	K01174	nuc; micrococcal nuclease [EC:3.1.31.1]	NA
UHGV-0156205_2	PHROG	phrog_20876	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0156205_2	UniRef90	UniRef90_A0A140L9P1	Thermonuclease	NA
UHGV-0156205_2	eggNOG-mapper	1089548.KI783301_gene2029	Staphylococcal nuclease homologues	NA
UHGV-0156205_2	PADLOC	shah_acc_0212	SNc+LTD	CRISPR-CAS
UHGV-0156205_2	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-0156205_2	Pfam	PF00565	Staphylococcal nuclease homologue	SNase
UHGV-0156205_2	COG	COG1525	Endonuclease YncB, thermonuclease family	NA
UHGV-0156205_3	PHROG	phrog_87	metallo-protease	other
UHGV-0156205_3	UniRef90	UniRef90_A0A1Y3RG05	Peptidase_M78 domain-containing protein	NA
UHGV-0156205_3	eggNOG-mapper	1007096.BAGW01000011_gene2354	IrrE N-terminal-like domain	NA
UHGV-0156205_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0156205_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0156205_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0156205_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0156205_4	UniRef90	UniRef90_A0A1Y3RHT3	HTH cro/C1-type domain-containing protein	NA
UHGV-0156205_4	eggNOG-mapper	1160721.RBI_I01471	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0156205_4	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0156205_4	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0156205_5	UniRef90	UniRef90_A0A845R4W0	XRE family transcriptional regulator	NA
UHGV-0156205_5	eggNOG-mapper	742738.HMPREF9460_02486	NA	NA
UHGV-0156205_5	Structural annotation	PF13443, NF000090, COG1813	NA	NA
UHGV-0156205_8	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0156205_10	Structural annotation	PF13560	NA	NA
UHGV-0156205_13	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0156205_13	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0156205_13	UniRef90	UniRef90_UPI001959E3D8	AAA family ATPase	NA
UHGV-0156205_13	eggNOG-mapper	1203606.HMPREF1526_00309	nuclear chromosome segregation	NA
UHGV-0156205_13	Pfam	PF13476	AAA domain	AAA_23
UHGV-0156205_13	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0156205_13	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0156205_14	PHROG	phrog_862	NA	unknown function
UHGV-0156205_14	UniRef90	UniRef90_A0A2P9FIG4	NA	NA
UHGV-0156205_14	eggNOG-mapper	1203606.HMPREF1526_00310	NA	NA
UHGV-0156205_14	Structural annotation	PF05037, COG2965	NA	NA
UHGV-0156205_15	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0156205_15	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0156205_15	UniRef90	UniRef90_UPI00195A5026	MBL fold metallo-hydrolase	NA
UHGV-0156205_15	eggNOG-mapper	1203606.HMPREF1526_00311	Metallo-beta-lactamase superfamily	NA
UHGV-0156205_15	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0156205_15	dbAPIS	APIS058	NA	NA
UHGV-0156205_15	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0156205_15	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0156205_16	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0156205_16	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0156205_16	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-0156205_17	PHROG	phrog_1029	NA	unknown function
UHGV-0156205_17	eggNOG-mapper	1203606.HMPREF1526_01890	NA	NA
UHGV-0156205_17	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0156205_18	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0156205_18	UniRef90	UniRef90_A0A1C6D5S6	NA	NA
UHGV-0156205_18	eggNOG-mapper	1235790.C805_00030	NA	NA
UHGV-0156205_18	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0156205_18	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0156205_19	Structural annotation	PF11417	NA	NA
UHGV-0156205_21	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0156205_21	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0156205_21	UniRef90	UniRef90_H1CIV2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0156205_21	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0156205_21	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0156205_21	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0156205_21	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0156205_21	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0156205_22	eggNOG-mapper	445972.ANACOL_00168	NA	NA
UHGV-0156205_23	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0156205_23	UniRef90	UniRef90_UPI0018774E0E	reductase	NA
UHGV-0156205_23	eggNOG-mapper	1235835.C814_01169	NA	NA
UHGV-0156205_23	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0156205_23	Structural annotation	PF01507, NF006327	NA	NA
UHGV-0156205_24	PHROG	phrog_38832	NA	unknown function
UHGV-0156205_24	Structural annotation	PF07073	NA	NA
UHGV-0156205_30	eggNOG-mapper	318464.IO99_07375	NA	NA
UHGV-0156205_31	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0156205_31	Structural annotation	NF001611, COG1694	NA	NA
UHGV-0156205_35	UniRef90	UniRef90_U2R3C0	Nascent polypeptide-associated complex domain protein	NA
UHGV-0156205_35	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0156205_35	Structural annotation	PF13542	NA	NA
UHGV-0156205_36	PHROG	phrog_2776	NA	unknown function
UHGV-0156205_36	UniRef90	UniRef90_A0A5S4VR73	Helix-turn-helix domain-containing protein	NA
UHGV-0156205_36	eggNOG-mapper	411490.ANACAC_00794	NA	NA
UHGV-0156205_36	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0156205_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0156205_37	PHROG	phrog_10250	NA	unknown function
UHGV-0156205_37	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0156205_37	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0156205_37	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0156205_37	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0156205_37	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0156205_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-0156205_37	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0156205_38	PHROG	phrog_64	portal protein	head and packaging
UHGV-0156205_38	UniRef90	UniRef90_A0A856HZB4	Phage portal protein	NA
UHGV-0156205_38	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0156205_38	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0156205_38	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0156205_39	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0156205_39	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0156205_39	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0156205_39	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0156205_39	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0156205_39	COG	COG2369	NA	NA
UHGV-0156205_39	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0156205_40	PHROG	phrog_1865	NA	unknown function
UHGV-0156205_40	Structural annotation	PF07073, MF_00436, NF037951, COG4568	NA	NA
UHGV-0156205_41	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0156205_41	UniRef90	UniRef90_A0A3A9EIF3	HK97 gp10 family phage protein	NA
UHGV-0156205_41	eggNOG-mapper	1504822.CCNO01000013_gene284	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0156205_41	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0156205_41	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0156205_41	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0156205_42	Structural annotation	PF18152	NA	NA
UHGV-0156205_43	Structural annotation	PF06810	NA	NA
UHGV-0156205_44	PHROG	phrog_544	major head protein	head and packaging
UHGV-0156205_44	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0156205_44	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0156205_44	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0156205_46	PHROG	phrog_17977	NA	unknown function
UHGV-0156205_46	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0156205_46	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0156205_47	PHROG	phrog_17405	head protein	head and packaging
UHGV-0156205_47	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0156205_47	Structural annotation	PF11367	NA	NA
UHGV-0156205_48	PHROG	phrog_885	major tail protein	tail
UHGV-0156205_48	UniRef90	UniRef90_UPI000BE41A82	chitobiase/beta-hexosaminidase C-terminal domain-containing protein	NA
UHGV-0156205_48	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0156205_48	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0156205_49	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-0156205_51	PHROG	phrog_3981	tail length tape measure protein	tail
UHGV-0156205_51	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0156205_51	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0156205_51	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0156205_52	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0156205_53	PHROG	phrog_13879	NA	unknown function
UHGV-0156205_53	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-0156205_53	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-0156205_54	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0156205_54	Structural annotation	PF00354	NA	NA
UHGV-0156205_55	eggNOG-mapper	552398.HMPREF0866_02181	NA	NA
UHGV-0156205_57	UniRef90	UniRef90_A0A1Y4UUC3	XkdX family protein	NA
UHGV-0156205_57	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0156205_58	PHROG	phrog_37604	NA	unknown function
UHGV-0156205_58	eggNOG-mapper	1232443.BAIA02000078_gene10	NA	NA
UHGV-0156205_59	PHROG	phrog_13256	NA	unknown function
UHGV-0156205_59	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0156205_61	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0156205_61	PHROG	phrog_435	endolysin	lysis
UHGV-0156205_61	UniRef90	UniRef90_UPI001C107E48	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0156205_61	eggNOG-mapper	1410668.JNKC01000001_gene1675	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0156205_61	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0156205_61	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0156205_61	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0156205_61	Structural annotation	PF01520, PF09992, PF01471, MF_00562, TIGR02883, COG0860, COG4632, COG3409	NA	NA
UHGV-0156205_62	UniRef90	UniRef90_A0A1Y4L993	Hydrolase	NA
UHGV-0156205_62	eggNOG-mapper	552398.HMPREF0866_03060	GMP reductase activity	NA
UHGV-0156205_62	COG	COG0516	IMP dehydrogenase/GMP reductase	NA
UHGV-0156205_63	KOfam	K01952	PFAS, purL; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]	NA
UHGV-0156205_63	UniRef90	UniRef90_A0A096BD85	AIRS_C domain-containing protein	NA
UHGV-0156205_63	eggNOG-mapper	742738.HMPREF9460_00287	AIR synthase related protein, C-terminal domain	NA
UHGV-0156205_63	Pfam	PF13507	CobB/CobQ-like glutamine amidotransferase domain	GATase_5
UHGV-0156205_63	COG	COG0046	Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain	NA