UHGV-0156242

Genome information

Genome length 31,619 bps

CDS count 52

Completeness 89.92% (medium-quality)

geNomad score 0.9710

Prediction confidence Confident

Genome information
Genome ID	UHGV-0156242
vOTU ID	vOTU-027740
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_463154
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.92% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9710
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	66.3
Jumbo phage	No

Genome content
Genome length	31,619 bps
GC content	30.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	92.65%
Average CDS length	566.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0156242_1	PHROG	phrog_18996	NA	unknown function
UHGV-0156242_1	UniRef90	UniRef90_UPI001C3B7CE9	Prevent-host-death protein	NA
UHGV-0156242_1	eggNOG-mapper	888060.HMPREF9081_1707	NA	NA
UHGV-0156242_2	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0156242_2	PHROG	phrog_435	endolysin	lysis
UHGV-0156242_2	UniRef90	UniRef90_UPI00195A3C93	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0156242_2	eggNOG-mapper	1401067.HMPREF0872_07855	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0156242_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0156242_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0156242_2	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0156242_3	PHROG	phrog_199	holin	lysis
UHGV-0156242_3	UniRef90	UniRef90_A0A378NSW3	Phage-related holin (Lysis protein)	NA
UHGV-0156242_3	eggNOG-mapper	1064535.MELS_1118	Bacteriophage holin family	NA
UHGV-0156242_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0156242_3	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0156242_3	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0156242_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0156242_4	Structural annotation	PF13084	NA	NA
UHGV-0156242_7	UniRef90	UniRef90_UPI001C3AF704	Recombinase XerC	NA
UHGV-0156242_7	eggNOG-mapper	1273103.NM10_01678	Phage integrase family	NA
UHGV-0156242_7	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0156242_9	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0156242_9	UniRef90	UniRef90_UPI0018C70641	phage tail protein	NA
UHGV-0156242_9	eggNOG-mapper	1232428.CAVO010000003_gene994	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0156242_9	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0156242_9	Structural annotation	PF12571	NA	NA
UHGV-0156242_10	PHROG	phrog_521	tail protein	tail
UHGV-0156242_10	UniRef90	UniRef90_UPI00195901ED	NA	NA
UHGV-0156242_10	eggNOG-mapper	1273103.NM10_00994	NA	NA
UHGV-0156242_10	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0156242_10	COG	COG3778	NA	NA
UHGV-0156242_10	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0156242_11	PHROG	phrog_6	baseplate protein	tail
UHGV-0156242_11	UniRef90	UniRef90_UPI00195E44EB	baseplate J/gp47 family protein	NA
UHGV-0156242_11	eggNOG-mapper	1232428.CAVO010000003_gene996	Baseplate J-like protein	NA
UHGV-0156242_11	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0156242_11	COG	COG3299	NA	NA
UHGV-0156242_11	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0156242_12	PHROG	phrog_120	baseplate protein	tail
UHGV-0156242_12	UniRef90	UniRef90_A0A412CHX1	NA	NA
UHGV-0156242_12	eggNOG-mapper	1232428.CAVO010000003_gene997	NA	NA
UHGV-0156242_12	Pfam	PF10934	NA	DUF2634
UHGV-0156242_12	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0156242_12	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0156242_13	PHROG	phrog_579	NA	unknown function
UHGV-0156242_13	UniRef90	UniRef90_A0A412CHC2	NA	NA
UHGV-0156242_13	eggNOG-mapper	1232428.CAVO010000003_gene998	NA	NA
UHGV-0156242_13	Pfam	PF10844	NA	DUF2577
UHGV-0156242_13	Structural annotation	PF10844	NA	NA
UHGV-0156242_14	PHROG	phrog_400	tail protein	tail
UHGV-0156242_14	UniRef90	UniRef90_A0A848BXY8	Lytic transglycosylase domain-containing protein	NA
UHGV-0156242_14	eggNOG-mapper	1232428.CAVO010000003_gene999	NLP P60 protein	NA
UHGV-0156242_14	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0156242_14	Structural annotation	PF14594, PF00877, NF033848, NF008096, COG3500	NA	NA
UHGV-0156242_15	PHROG	phrog_5184	NA	unknown function
UHGV-0156242_15	UniRef90	UniRef90_A0A0L0W6M8	LysM domain-containing protein	NA
UHGV-0156242_15	eggNOG-mapper	1232428.CAVO010000003_gene1000	LysM domain	NA
UHGV-0156242_15	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0156242_15	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0156242_15	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0156242_16	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0156242_16	UniRef90	UniRef90_UPI001958E67E	phage tail tape measure protein	NA
UHGV-0156242_16	eggNOG-mapper	1232428.CAVO010000003_gene1001	Phage-related minor tail protein	NA
UHGV-0156242_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0156242_16	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0156242_16	COG	COG5283	Phage-related tail protein	NA
UHGV-0156242_16	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0156242_17	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0156242_17	UniRef90	UniRef90_A0A7Y2PM55	XkdN-like protein	NA
UHGV-0156242_17	eggNOG-mapper	568816.Acin_1336	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0156242_17	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0156242_17	Structural annotation	PF08890	NA	NA
UHGV-0156242_18	PHROG	phrog_365	tail protein	tail
UHGV-0156242_18	UniRef90	UniRef90_A0A412CHD4	Phage portal protein	NA
UHGV-0156242_18	eggNOG-mapper	1232428.CAVO010000003_gene1003	Phage tail tube protein	NA
UHGV-0156242_18	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0156242_18	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0156242_19	PHROG	phrog_1480	tail sheath	tail
UHGV-0156242_19	UniRef90	UniRef90_UPI00195B2F80	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-0156242_19	eggNOG-mapper	1232428.CAVO010000003_gene1004	Phage tail sheath C-terminal domain	NA
UHGV-0156242_19	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0156242_19	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0156242_19	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0156242_20	PHROG	phrog_525	NA	unknown function
UHGV-0156242_20	eggNOG-mapper	397288.C806_00069	NA	NA
UHGV-0156242_20	Pfam	PF20765	NA	DUF6838
UHGV-0156242_20	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0156242_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0156242_21	UniRef90	UniRef90_UPI0019591A25	HK97 gp10 family phage protein	NA
UHGV-0156242_21	eggNOG-mapper	1232428.CAVO010000003_gene1006	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0156242_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0156242_21	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0156242_22	PHROG	phrog_25	head closure Hc1	connector
UHGV-0156242_22	UniRef90	UniRef90_A0A412CHY1	Head-tail adaptor protein	NA
UHGV-0156242_22	eggNOG-mapper	1232428.CAVO010000003_gene1007	Phage head-tail joining protein	NA
UHGV-0156242_22	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0156242_22	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0156242_22	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0156242_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0156242_23	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0156242_23	UniRef90	UniRef90_UPI00195DB364	head-tail connector protein	NA
UHGV-0156242_23	eggNOG-mapper	935948.KE386495_gene1332	Phage gp6-like head-tail connector protein	NA
UHGV-0156242_23	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0156242_23	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0156242_23	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0156242_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-0156242_24	UniRef90	UniRef90_UPI000E53779F	phage major capsid protein	NA
UHGV-0156242_24	eggNOG-mapper	1341151.ASZU01000004_gene260	Phage capsid family	NA
UHGV-0156242_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0156242_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0156242_24	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0156242_24	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0156242_25	KOfam	K06904	NA	NA
UHGV-0156242_25	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0156242_25	UniRef90	UniRef90_A0A412CHQ0	HK97 family phage prohead protease	NA
UHGV-0156242_25	eggNOG-mapper	1232428.CAVO010000003_gene1010	Caudovirus prohead serine protease	NA
UHGV-0156242_25	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0156242_25	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0156242_25	COG	COG3740	Phage head maturation protease	NA
UHGV-0156242_25	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0156242_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-0156242_26	UniRef90	UniRef90_UPI001D0729FC	phage portal protein	NA
UHGV-0156242_26	eggNOG-mapper	1232428.CAVO010000003_gene1011	Phage portal protein	NA
UHGV-0156242_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0156242_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0156242_26	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0156242_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0156242_27	UniRef90	UniRef90_A0A412CHE2	Terminase large subunit	NA
UHGV-0156242_27	eggNOG-mapper	1232428.CAVO010000003_gene1012	Phage Terminase	NA
UHGV-0156242_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0156242_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0156242_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0156242_27	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0156242_28	PHROG	phrog_1066	NA	unknown function
UHGV-0156242_28	eggNOG-mapper	1232428.CAVO010000003_gene1013	NA	NA
UHGV-0156242_28	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0156242_29	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0156242_29	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0156242_29	UniRef90	UniRef90_A0A412CHN3	HNH endonuclease	NA
UHGV-0156242_29	eggNOG-mapper	1089548.KI783301_gene3222	HNH endonuclease	NA
UHGV-0156242_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0156242_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0156242_30	Structural annotation	PF11570, NF038178, COG1842	NA	NA
UHGV-0156242_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0156242_35	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0156242_35	UniRef90	UniRef90_UPI00195CFC41	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0156242_35	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0156242_35	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0156242_36	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0156242_36	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0156242_36	UniRef90	UniRef90_UPI000E49F46F	single-stranded DNA-binding protein	NA
UHGV-0156242_36	eggNOG-mapper	1122217.KB899575_gene2011	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0156242_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0156242_36	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0156242_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0156242_36	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0156242_36	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0156242_41	PHROG	phrog_13202	NA	unknown function
UHGV-0156242_41	eggNOG-mapper	697284.ERIC2_c10640	NA	NA
UHGV-0156242_43	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0156242_43	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0156242_43	UniRef90	UniRef90_UPI001D079CA7	replicative DNA helicase	NA
UHGV-0156242_43	eggNOG-mapper	1122217.KB899575_gene1971	Participates in initiation and elongation during chromosome replication	NA
UHGV-0156242_43	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0156242_43	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0156242_43	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-0156242_43	COG	COG0305	Replicative DNA helicase	NA
UHGV-0156242_43	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0156242_44	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0156242_44	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0156242_44	UniRef90	UniRef90_UPI001D08DC67	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0156242_44	eggNOG-mapper	632245.CLP_1613	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0156242_44	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0156242_44	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0156242_44	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0156242_44	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0156242_44	Structural annotation	PF09681, TIGR01714, COG3935	NA	NA
UHGV-0156242_47	Structural annotation	PF11614, NF041740, COG5066	NA	NA
UHGV-0156242_49	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0156242_49	UniRef90	UniRef90_UPI001D088355	helix-turn-helix transcriptional regulator	NA
UHGV-0156242_49	eggNOG-mapper	536233.CLO_1403	Helix-turn-helix XRE-family like proteins	NA
UHGV-0156242_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0156242_49	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0156242_49	Structural annotation	PF13560, MF_00535, TIGR03070, COG1476	NA	NA
UHGV-0156242_50	UniRef90	UniRef90_UPI001CD1D830	helix-turn-helix transcriptional regulator	NA
UHGV-0156242_50	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0156242_50	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0156242_51	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0156242_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0156242_51	UniRef90	UniRef90_UPI001CD48953	helix-turn-helix transcriptional regulator	NA
UHGV-0156242_51	eggNOG-mapper	1121121.KB894312_gene3203	Helix-turn-helix XRE-family like proteins	NA
UHGV-0156242_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0156242_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0156242_52	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0156242_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0156242_52	UniRef90	UniRef90_UPI001D0627D7	helix-turn-helix transcriptional regulator	NA
UHGV-0156242_52	eggNOG-mapper	588581.Cpap_0877	helix-turn-helix	NA
UHGV-0156242_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0156242_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0156242_52	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA