UHGV-0156243

Genome information

Genome length 29,368 bps

CDS count 49

Completeness 83.78% (medium-quality)

geNomad score 0.9734

Prediction confidence Confident

Genome information
Genome ID	UHGV-0156243
vOTU ID	vOTU-017667
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_465260
BioSample	SAMN06112075
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.78% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9734
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.91
Jumbo phage	No

Genome content
Genome length	29,368 bps
GC content	60.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	91.00%
Average CDS length	550.65 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0156243_3	eggNOG-mapper	718252.FP2_06840	BRO family, N-terminal domain	NA
UHGV-0156243_3	COG	COG3617	Prophage antirepressor	NA
UHGV-0156243_5	UniRef90	UniRef90_A0A2A7BGV7	HTH cro/C1-type domain-containing protein	NA
UHGV-0156243_5	Pfam	PF05339	NA	DUF739
UHGV-0156243_5	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0156243_5	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0156243_8	UniRef90	UniRef90_UPI001D0E65C2	NA	NA
UHGV-0156243_8	Pfam	PF12957	NA	DUF3846
UHGV-0156243_8	Structural annotation	PF12957	NA	NA
UHGV-0156243_9	eggNOG-mapper	665956.HMPREF1032_03597	DNA binding	NA
UHGV-0156243_9	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0156243_11	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0156243_11	UniRef90	UniRef90_UPI0011C8A287	recombinase RecT	NA
UHGV-0156243_11	eggNOG-mapper	33035.JPJF01000071_gene4462	NA	NA
UHGV-0156243_11	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0156243_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0156243_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0156243_12	UniRef90	UniRef90_D4K451	Single-stranded DNA-binding protein	NA
UHGV-0156243_12	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0156243_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0156243_12	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0156243_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0156243_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0156243_12	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0156243_13	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0156243_13	UniRef90	UniRef90_UPI001C02E649	DnaD domain protein	NA
UHGV-0156243_13	eggNOG-mapper	718252.FP2_01000	NA	NA
UHGV-0156243_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0156243_13	Structural annotation	PF09681, MF_01819, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0156243_14	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-0156243_15	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0156243_15	UniRef90	UniRef90_A0A7J2R6L5	DNA cytosine methyltransferase (Fragment)	NA
UHGV-0156243_15	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0156243_15	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0156243_17	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0156243_17	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-0156243_17	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0156243_18	PHROG	phrog_3136	NA	unknown function
UHGV-0156243_18	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-0156243_18	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0156243_18	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0156243_19	eggNOG-mapper	525919.Apre_0813	Endodeoxyribonuclease RusA	NA
UHGV-0156243_19	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0156243_21	PHROG	phrog_6568	NA	unknown function
UHGV-0156243_21	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA
UHGV-0156243_23	PHROG	phrog_3253	NA	unknown function
UHGV-0156243_23	UniRef90	UniRef90_UPI00130EDE0D	resolvase	NA
UHGV-0156243_23	eggNOG-mapper	1151292.QEW_3282	NA	NA
UHGV-0156243_23	Structural annotation	PF18618	NA	NA
UHGV-0156243_24	KOfam	K03700	recU; recombination protein U	NA
UHGV-0156243_24	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0156243_24	UniRef90	UniRef90_UPI001C036091	Holliday junction resolvase RecU	NA
UHGV-0156243_24	eggNOG-mapper	748224.HMPREF9436_03347	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0156243_24	Pfam	PF03838	Recombination protein U	RecU
UHGV-0156243_24	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0156243_24	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0156243_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0156243_25	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0156243_27	PHROG	phrog_2412	NA	unknown function
UHGV-0156243_27	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-0156243_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0156243_28	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0156243_28	UniRef90	UniRef90_A0A844EGH8	PBSX family phage terminase large subunit	NA
UHGV-0156243_28	eggNOG-mapper	1449050.JNLE01000003_gene3895	phage terminase, large subunit, PBSX family	NA
UHGV-0156243_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0156243_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0156243_28	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0156243_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-0156243_29	UniRef90	UniRef90_A0A7G9WF85	Phage portal protein	NA
UHGV-0156243_29	eggNOG-mapper	718252.FP2_06700	NA	NA
UHGV-0156243_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0156243_30	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0156243_30	UniRef90	UniRef90_D4K446	Phage minor capsid protein 2	NA
UHGV-0156243_30	eggNOG-mapper	718252.FP2_06690	NA	NA
UHGV-0156243_30	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0156243_30	COG	COG2369	NA	NA
UHGV-0156243_30	Structural annotation	PF06152, PF12106	NA	NA
UHGV-0156243_32	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0156243_32	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-0156243_32	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-0156243_32	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0156243_32	Structural annotation	PF06810	NA	NA
UHGV-0156243_33	PHROG	phrog_267	major head protein	head and packaging
UHGV-0156243_33	UniRef90	UniRef90_A0A0D8J2H9	p22 coat protein 5	NA
UHGV-0156243_33	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-0156243_33	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0156243_34	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0156243_35	PHROG	phrog_3366	NA	unknown function
UHGV-0156243_35	Structural annotation	PF20536	NA	NA
UHGV-0156243_36	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0156243_36	UniRef90	UniRef90_UPI0016528549	minor capsid protein	NA
UHGV-0156243_36	eggNOG-mapper	718252.FP2_06630	Minor capsid protein	NA
UHGV-0156243_36	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0156243_36	Structural annotation	PF11114	NA	NA
UHGV-0156243_37	PHROG	phrog_3266	tail completion	connector
UHGV-0156243_37	eggNOG-mapper	718252.FP2_06620	NA	NA
UHGV-0156243_37	Structural annotation	PF12691	NA	NA
UHGV-0156243_38	PHROG	phrog_820	major tail protein	tail
UHGV-0156243_38	eggNOG-mapper	718252.FP2_06610	NA	NA
UHGV-0156243_38	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0156243_39	PHROG	phrog_4450	NA	unknown function
UHGV-0156243_39	Structural annotation	PF20378	NA	NA
UHGV-0156243_40	PHROG	phrog_706	NA	unknown function
UHGV-0156243_40	UniRef90	UniRef90_D4K437	Bacteriophage Gp15 protein	NA
UHGV-0156243_40	eggNOG-mapper	718252.FP2_06590	Bacteriophage Gp15 protein	NA
UHGV-0156243_40	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0156243_40	Structural annotation	PF06854	NA	NA
UHGV-0156243_41	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0156243_41	UniRef90	UniRef90_UPI00030AC5DB	tape measure protein	NA
UHGV-0156243_41	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-0156243_41	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0156243_41	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0156243_41	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0156243_42	PHROG	phrog_36410	NA	unknown function
UHGV-0156243_42	UniRef90	UniRef90_UPI00130E98E0	phage tail family protein	NA
UHGV-0156243_42	eggNOG-mapper	748224.HMPREF9436_03325	Phage tail protein	NA
UHGV-0156243_42	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0156243_43	PHROG	phrog_538	minor tail protein	tail
UHGV-0156243_43	UniRef90	UniRef90_UPI0011064D4D	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0156243_43	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-0156243_43	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0156243_43	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0156243_44	PHROG	phrog_9534	head protein	head and packaging
UHGV-0156243_44	eggNOG-mapper	748224.HMPREF9436_03323	COG NOG18825 non supervised orthologous group	NA
UHGV-0156243_44	Structural annotation	PF21567	NA	NA
UHGV-0156243_47	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0156243_47	PHROG	phrog_894	endolysin	lysis
UHGV-0156243_47	UniRef90	UniRef90_A0A3E2U540	NA	NA
UHGV-0156243_47	eggNOG-mapper	718252.FP2_05470	Peptidase M15A	NA
UHGV-0156243_47	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0156243_47	COG	COG3108	NA	NA
UHGV-0156243_48	PHROG	phrog_4105	NA	unknown function
UHGV-0156243_48	eggNOG-mapper	718252.FP2_06480	NA	NA
UHGV-0156243_49	PHROG	phrog_263	holin	lysis
UHGV-0156243_49	UniRef90	UniRef90_D4K430	Holin, SPP1 family	NA
UHGV-0156243_49	eggNOG-mapper	718252.FP2_06470	SPP1 phage holin	NA
UHGV-0156243_49	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0156243_49	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0156243_49	Structural annotation	PF04688, TIGR01592	NA	NA