UHGV-0156279

Genome information

Genome length 35,655 bps

CDS count 53

Completeness 99.90% (high-quality)

geNomad score 0.9782

Prediction confidence Confident

Genome information
Genome ID	UHGV-0156279
vOTU ID	vOTU-078435
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_495632
BioSample	SAMN06110003
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9782
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.97
Jumbo phage	No

Genome content
Genome length	35,655 bps
GC content	39.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	93.24%
Average CDS length	631.70 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0156279_1	UniRef90	UniRef90_A0A374N9Y2	NA	NA
UHGV-0156279_1	Structural annotation	PF10651, PF08931, TIGR02268	NA	NA
UHGV-0156279_2	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0156279_2	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-0156279_2	eggNOG-mapper	1462527.CCDM010000003_gene3730	gp58-like protein	NA
UHGV-0156279_2	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0156279_2	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0156279_2	COG	COG1511	NA	NA
UHGV-0156279_2	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0156279_3	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0156279_3	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0156279_3	eggNOG-mapper	1444306.JFZC01000034_gene2623	tail component	NA
UHGV-0156279_3	COG	COG4722	Phage-related protein YomH	NA
UHGV-0156279_3	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0156279_4	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0156279_4	PHROG	phrog_5218	NA	unknown function
UHGV-0156279_4	UniRef90	UniRef90_UPI000E474EFE	phage tail tape measure protein	NA
UHGV-0156279_4	eggNOG-mapper	999413.HMPREF1094_02001	Phage-related minor tail protein	NA
UHGV-0156279_4	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0156279_4	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0156279_4	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0156279_6	Structural annotation	PF11836	NA	NA
UHGV-0156279_7	PHROG	phrog_88	major tail protein	tail
UHGV-0156279_7	UniRef90	UniRef90_A0A1G5CNS8	Phage major tail protein, phi13 family	NA
UHGV-0156279_7	eggNOG-mapper	1235790.C805_00875	phage major tail protein, phi13 family	NA
UHGV-0156279_7	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0156279_7	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0156279_8	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-0156279_8	eggNOG-mapper	1235792.C808_00089	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0156279_8	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0156279_8	Structural annotation	TIGR01725	NA	NA
UHGV-0156279_9	eggNOG-mapper	879305.HMPREF9290_0134	NA	NA
UHGV-0156279_9	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0156279_10	PHROG	phrog_19734	NA	unknown function
UHGV-0156279_10	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0156279_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0156279_11	PHROG	phrog_749	NA	unknown function
UHGV-0156279_11	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-0156279_11	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0156279_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-0156279_12	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-0156279_12	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0156279_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0156279_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0156279_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0156279_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0156279_13	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0156279_13	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0156279_13	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0156279_13	eggNOG-mapper	86416.Clopa_0340	Belongs to the peptidase S14 family	NA
UHGV-0156279_13	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0156279_13	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0156279_13	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0156279_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-0156279_14	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-0156279_14	eggNOG-mapper	1415774.U728_1254	Phage portal protein	NA
UHGV-0156279_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0156279_14	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0156279_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0156279_14	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0156279_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0156279_15	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-0156279_15	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0156279_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0156279_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0156279_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0156279_15	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0156279_16	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0156279_16	UniRef90	UniRef90_A0A1M5U1D5	Phage terminase, small subunit	NA
UHGV-0156279_16	eggNOG-mapper	1211817.CCAT010000053_gene2128	NA	NA
UHGV-0156279_16	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0156279_16	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0156279_17	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0156279_17	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-0156279_17	eggNOG-mapper	1158607.UAU_01026	HNH endonuclease	NA
UHGV-0156279_17	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0156279_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0156279_18	PHROG	phrog_31049	NA	unknown function
UHGV-0156279_18	eggNOG-mapper	431943.CKL_4074	NA	NA
UHGV-0156279_18	Structural annotation	TIGR01636	NA	NA
UHGV-0156279_19	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0156279_19	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0156279_19	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0156279_22	PHROG	phrog_8684	NA	unknown function
UHGV-0156279_22	UniRef90	UniRef90_A0A374DV44	YopX domain-containing protein	NA
UHGV-0156279_22	eggNOG-mapper	411477.PARMER_02066	YopX protein	NA
UHGV-0156279_22	Pfam	PF09643	YopX protein	YopX
UHGV-0156279_22	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0156279_22	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0156279_23	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0156279_23	UniRef90	UniRef90_A0A374DVG7	HNH endonuclease	NA
UHGV-0156279_23	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0156279_23	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0156279_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0156279_23	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0156279_24	PHROG	phrog_824	NA	unknown function
UHGV-0156279_24	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-0156279_24	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0156279_24	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0156279_24	Structural annotation	PF08774	NA	NA
UHGV-0156279_25	PHROG	phrog_24518	NA	unknown function
UHGV-0156279_25	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0156279_26	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0156279_26	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0156279_26	UniRef90	UniRef90_UPI001B3C6DA9	N-6 DNA methylase	NA
UHGV-0156279_26	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-0156279_26	PADLOC	MTase_I_00010	Type I methyltransferase	RM
UHGV-0156279_26	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0156279_26	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0156279_26	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0156279_27	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0156279_27	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0156279_27	UniRef90	UniRef90_A0A3D3D7T1	ParB domain-containing protein	NA
UHGV-0156279_27	eggNOG-mapper	1160721.RBI_I01596	ParB-like nuclease domain	NA
UHGV-0156279_27	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0156279_27	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0156279_27	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0156279_27	Structural annotation	PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0156279_29	Structural annotation	COG1862	NA	NA
UHGV-0156279_30	PHROG	phrog_6058	NA	unknown function
UHGV-0156279_30	Structural annotation	NF033787	NA	NA
UHGV-0156279_31	PHROG	phrog_8684	NA	unknown function
UHGV-0156279_31	UniRef90	UniRef90_UPI000E48855B	YopX family protein	NA
UHGV-0156279_31	eggNOG-mapper	1450694.BTS2_0501	YopX protein	NA
UHGV-0156279_31	Pfam	PF09643	YopX protein	YopX
UHGV-0156279_31	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0156279_31	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0156279_32	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0156279_32	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0156279_32	UniRef90	UniRef90_UPI001C034617	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0156279_32	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0156279_32	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0156279_32	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0156279_32	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0156279_32	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0156279_35	PHROG	phrog_824	NA	unknown function
UHGV-0156279_35	UniRef90	UniRef90_A0A374MXE9	VRR-NUC domain-containing protein	NA
UHGV-0156279_35	eggNOG-mapper	1235792.C808_00622	VRR_NUC	NA
UHGV-0156279_35	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0156279_35	Structural annotation	PF08774	NA	NA
UHGV-0156279_36	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0156279_36	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0156279_36	UniRef90	UniRef90_A0A374MYR7	IstB_IS21 domain-containing protein	NA
UHGV-0156279_36	eggNOG-mapper	1507.HMPREF0262_00302	Bacterial dnaA protein	NA
UHGV-0156279_36	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0156279_36	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0156279_36	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0156279_37	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0156279_37	UniRef90	UniRef90_A0A374NA85	NA	NA
UHGV-0156279_37	eggNOG-mapper	1235790.C805_00030	NA	NA
UHGV-0156279_37	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0156279_37	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0156279_37	Structural annotation	PF14297	NA	NA
UHGV-0156279_38	PHROG	phrog_398	NA	unknown function
UHGV-0156279_38	UniRef90	UniRef90_UPI000C7B20DA	putative HNHc nuclease	NA
UHGV-0156279_38	eggNOG-mapper	293826.Amet_2584	Putative HNHc nuclease	NA
UHGV-0156279_38	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0156279_38	Structural annotation	PF16784	NA	NA
UHGV-0156279_39	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0156279_39	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0156279_39	UniRef90	UniRef90_A0A373XYI8	MBL fold metallo-hydrolase	NA
UHGV-0156279_39	eggNOG-mapper	888059.HMPREF9071_2100	Beta-lactamase superfamily domain	NA
UHGV-0156279_39	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0156279_39	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0156279_39	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0156279_40	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0156279_40	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0156279_40	UniRef90	UniRef90_A0A374N9W0	Recombinase	NA
UHGV-0156279_40	eggNOG-mapper	428127.EUBDOL_01509	RecT family	NA
UHGV-0156279_40	Pfam	PF03837	RecT family	RecT
UHGV-0156279_40	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0156279_40	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0156279_40	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0156279_41	PHROG	phrog_674	NA	unknown function
UHGV-0156279_41	UniRef90	UniRef90_A0A374N9T8	NA	NA
UHGV-0156279_41	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-0156279_41	Pfam	PF07083	NA	DUF1351
UHGV-0156279_41	Structural annotation	PF07083	NA	NA
UHGV-0156279_42	Structural annotation	PF04570, COG2075	NA	NA
UHGV-0156279_45	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-0156279_45	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0156279_49	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-0156279_50	UniRef90	UniRef90_A0A2N0UXQ7	HTH cro/C1-type domain-containing protein	NA
UHGV-0156279_50	eggNOG-mapper	78346.BRUM_0420	NA	NA
UHGV-0156279_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0156279_50	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0156279_51	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0156279_51	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0156279_51	UniRef90	UniRef90_A0A2N0UXR0	LexA repressor	NA
UHGV-0156279_51	eggNOG-mapper	246199.CUS_5911	NA	NA
UHGV-0156279_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0156279_51	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0156279_51	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0156279_51	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0156279_52	UniRef90	UniRef90_UPI001C00B95B	type II toxin-antitoxin system RelE/ParE family toxin	NA
UHGV-0156279_52	eggNOG-mapper	293826.Amet_3134	NA	NA
UHGV-0156279_52	Pfam	PF05973	NA	Gp49
UHGV-0156279_52	Structural annotation	PF05973, TIGR02683, COG4683	NA	NA
UHGV-0156279_53	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0156279_53	PHROG	phrog_2339	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0156279_53	UniRef90	UniRef90_A0A412UNZ9	XRE family transcriptional regulator	NA
UHGV-0156279_53	eggNOG-mapper	1280688.AUJB01000009_gene1936	Helix-turn-helix XRE-family like proteins	NA
UHGV-0156279_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0156279_53	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA