UHGV-0156350

Genome information

Genome length 19,353 bps

CDS count 26

Completeness 53.24% (medium-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-0156350
vOTU ID	vOTU-027747
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_467686
BioSample	SAMN06112094
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.24% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.49
Jumbo phage	No

Genome content
Genome length	19,353 bps
GC content	53.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	26
CDS density	94.29%
Average CDS length	705.23 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0156350_2	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0156350_2	PHROG	phrog_15001	endolysin	lysis
UHGV-0156350_2	UniRef90	UniRef90_R5H0D9	N-acetylmuramoyl-L-alanine amidase domain protein	NA
UHGV-0156350_2	eggNOG-mapper	1235835.C814_01292	Ami_2	NA
UHGV-0156350_2	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0156350_2	COG	COG1388	LysM repeat	NA
UHGV-0156350_2	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0156350_3	eggNOG-mapper	411470.RUMGNA_00254	NA	NA
UHGV-0156350_4	PHROG	phrog_1863	NA	unknown function
UHGV-0156350_4	eggNOG-mapper	1235797.C816_02840	NA	NA
UHGV-0156350_6	PHROG	phrog_4492	tail fiber protein	tail
UHGV-0156350_6	eggNOG-mapper	756499.Desde_1105	NA	NA
UHGV-0156350_6	Structural annotation	PF21621, PF21253, MF_01537, NF007875, COG3123	NA	NA
UHGV-0156350_7	PHROG	phrog_6616	tail protein	tail
UHGV-0156350_7	eggNOG-mapper	1117108.PAALTS15_13507	NA	NA
UHGV-0156350_7	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0156350_8	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0156350_9	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0156350_9	UniRef90	UniRef90_A0A174ZXN5	Phage-related minor tail protein	NA
UHGV-0156350_9	eggNOG-mapper	573061.Clocel_3533	tail tape measure protein	NA
UHGV-0156350_9	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0156350_9	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0156350_9	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0156350_11	eggNOG-mapper	545243.BAEV01000033_gene538	NA	NA
UHGV-0156350_12	PHROG	phrog_885	major tail protein	tail
UHGV-0156350_12	UniRef90	UniRef90_UPI00164A9E72	chitobiase/beta-hexosaminidase C-terminal domain-containing protein	NA
UHGV-0156350_12	eggNOG-mapper	457396.CSBG_01054	Chitobiase/beta-hexosaminidase C-terminal domain	NA
UHGV-0156350_12	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-0156350_12	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0156350_14	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-0156350_14	eggNOG-mapper	457396.CSBG_01052	NA	NA
UHGV-0156350_14	Structural annotation	TIGR01725	NA	NA
UHGV-0156350_15	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0156350_15	UniRef90	UniRef90_A0A1K1MQ38	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-0156350_15	eggNOG-mapper	644007.C5J966_9CAUD	NA	NA
UHGV-0156350_15	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0156350_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0156350_16	PHROG	phrog_5223	neck protein	connector
UHGV-0156350_16	UniRef90	UniRef90_UPI0018AC7B43	head-tail connector protein	NA
UHGV-0156350_16	eggNOG-mapper	1414720.CBYM010000040_gene1648	NA	NA
UHGV-0156350_16	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0156350_16	Structural annotation	TIGR01560	NA	NA
UHGV-0156350_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-0156350_17	UniRef90	UniRef90_A0A355RXP5	Phage major capsid protein	NA
UHGV-0156350_17	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0156350_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0156350_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0156350_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0156350_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0156350_18	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0156350_18	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0156350_18	UniRef90	UniRef90_A0A7X2P7H4	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0156350_18	eggNOG-mapper	1203606.HMPREF1526_00979	Belongs to the peptidase S14 family	NA
UHGV-0156350_18	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0156350_18	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0156350_18	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0156350_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0156350_19	UniRef90	UniRef90_UPI001782823A	phage portal protein	NA
UHGV-0156350_19	eggNOG-mapper	318464.IO99_13760	Portal protein	NA
UHGV-0156350_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0156350_19	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0156350_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0156350_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0156350_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0156350_20	UniRef90	UniRef90_UPI001D07C789	terminase large subunit	NA
UHGV-0156350_20	eggNOG-mapper	1203606.HMPREF1526_00981	Terminase	NA
UHGV-0156350_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0156350_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0156350_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0156350_20	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0156350_21	PHROG	phrog_1066	NA	unknown function
UHGV-0156350_21	eggNOG-mapper	1033738.CAEP01000018_gene3668	NA	NA
UHGV-0156350_21	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0156350_22	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0156350_22	UniRef90	UniRef90_UPI0004BB51A8	HNH endonuclease	NA
UHGV-0156350_22	eggNOG-mapper	1414720.CBYM010000040_gene1642	HNH nucleases	NA
UHGV-0156350_22	Pfam	PF13671	AAA domain	AAA_33
UHGV-0156350_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0156350_22	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0156350_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0156350_23	UniRef90	UniRef90_A0A174ZYK6	Phage transcriptional regulator, RinA family	NA
UHGV-0156350_23	eggNOG-mapper	1304880.JAGB01000002_gene2225	NA	NA
UHGV-0156350_23	Structural annotation	PF05263	NA	NA
UHGV-0156350_24	PHROG	phrog_22543	NA	unknown function