UHGV-0156353

Genome information

Genome length 26,820 bps

CDS count 43

Completeness 79.67% (medium-quality)

geNomad score 0.9430

Prediction confidence Confident

Genome information
Genome ID	UHGV-0156353
vOTU ID	vOTU-022112
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_471274
BioSample	SAMN06112050
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.67% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9430
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.99
Jumbo phage	No

Genome content
Genome length	26,820 bps
GC content	41.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	94.43%
Average CDS length	592.95 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0156353_1	eggNOG-mapper	1262914.BN533_01721	Ami_3	NA
UHGV-0156353_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0156353_2	PHROG	phrog_199	holin	lysis
UHGV-0156353_2	UniRef90	UniRef90_UPI000F0CB1C0	phage holin family protein	NA
UHGV-0156353_2	eggNOG-mapper	1120985.AUMI01000001_gene2154	Bacteriophage holin family	NA
UHGV-0156353_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0156353_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0156353_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0156353_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0156353_3	PHROG	phrog_18593	NA	unknown function
UHGV-0156353_3	UniRef90	UniRef90_A0A2Y9CAD1	Carbohydrate binding domain-containing protein	NA
UHGV-0156353_3	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0156353_3	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0156353_4	PHROG	phrog_13336	NA	unknown function
UHGV-0156353_4	eggNOG-mapper	2754.EH55_13265	NA	NA
UHGV-0156353_5	eggNOG-mapper	568816.Acin_1905	NA	NA
UHGV-0156353_5	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0156353_6	UniRef90	UniRef90_UPI0015588CAB	phage tail family protein	NA
UHGV-0156353_6	eggNOG-mapper	568816.Acin_1227	Phage tail protein	NA
UHGV-0156353_6	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0156353_6	Structural annotation	PF20753, PF19512, TIGR01633, COG4722	NA	NA
UHGV-0156353_7	PHROG	phrog_12798	NA	unknown function
UHGV-0156353_7	UniRef90	UniRef90_UPI000F0C3530	tape measure protein	NA
UHGV-0156353_7	eggNOG-mapper	568816.Acin_1908	tape measure	NA
UHGV-0156353_7	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0156353_7	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0156353_7	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0156353_7	Structural annotation	PF20155, MF_04138, TIGR01760, COG3941	NA	NA
UHGV-0156353_9	PHROG	phrog_2115	tail protein	tail
UHGV-0156353_9	Structural annotation	PF11836	NA	NA
UHGV-0156353_10	PHROG	phrog_1407	major tail protein	tail
UHGV-0156353_10	UniRef90	UniRef90_UPI000F0C9042	phage tail tube protein	NA
UHGV-0156353_10	eggNOG-mapper	1262914.BN533_00191	Phage tail tube protein	NA
UHGV-0156353_10	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0156353_10	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0156353_10	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0156353_11	PHROG	phrog_176	tail terminator	connector
UHGV-0156353_11	UniRef90	UniRef90_UPI000F0C6298	NA	NA
UHGV-0156353_11	Structural annotation	PF16807	NA	NA
UHGV-0156353_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0156353_12	UniRef90	UniRef90_UPI000F0C5A82	HK97 gp10 family phage protein	NA
UHGV-0156353_12	eggNOG-mapper	1262914.BN533_00193	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0156353_12	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0156353_12	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0156353_12	COG	COG5005	NA	NA
UHGV-0156353_12	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0156353_13	PHROG	phrog_25	head closure Hc1	connector
UHGV-0156353_13	UniRef90	UniRef90_UPI000F0CE808	phage head closure protein	NA
UHGV-0156353_13	eggNOG-mapper	198094.BA_4088	Phage head-tail joining protein	NA
UHGV-0156353_13	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0156353_13	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0156353_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0156353_14	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0156353_14	UniRef90	UniRef90_UPI000F0C32B3	head-tail connector protein	NA
UHGV-0156353_14	eggNOG-mapper	1262914.BN533_00195	Phage gp6-like head-tail connector protein	NA
UHGV-0156353_14	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0156353_14	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0156353_14	Structural annotation	PF05135, TIGR02215	NA	NA
UHGV-0156353_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0156353_15	UniRef90	UniRef90_UPI000F0C831E	phage major capsid protein	NA
UHGV-0156353_15	eggNOG-mapper	411902.CLOBOL_05666	Phage capsid family	NA
UHGV-0156353_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0156353_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0156353_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0156353_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0156353_16	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0156353_16	UniRef90	UniRef90_UPI000F0CB78B	HK97 family phage prohead protease	NA
UHGV-0156353_16	eggNOG-mapper	457415.HMPREF1006_02476	Caudovirus prohead serine protease	NA
UHGV-0156353_16	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0156353_16	COG	COG3087	Cell division protein FtsN	NA
UHGV-0156353_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-0156353_17	UniRef90	UniRef90_UPI000F0CB88A	phage portal protein	NA
UHGV-0156353_17	eggNOG-mapper	697281.Mahau_2914	TIGRFAM phage portal protein, HK97 family	NA
UHGV-0156353_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0156353_17	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0156353_17	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0156353_17	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0156353_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0156353_18	UniRef90	UniRef90_A0A7M2AYQ5	Terminase large subunit	NA
UHGV-0156353_18	eggNOG-mapper	1262914.BN533_00200	terminase, large subunit	NA
UHGV-0156353_18	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0156353_18	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0156353_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0156353_18	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0156353_19	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0156353_19	UniRef90	UniRef90_A0A7X9I6W6	Phage terminase small subunit P27 family	NA
UHGV-0156353_19	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0156353_19	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0156353_20	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0156353_20	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0156353_20	UniRef90	UniRef90_R6IEU0	Holin protein	NA
UHGV-0156353_20	eggNOG-mapper	1262914.BN533_00202	HNH nucleases	NA
UHGV-0156353_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0156353_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0156353_20	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0156353_21	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0156353_21	eggNOG-mapper	484770.UFO1_1680	NA	NA
UHGV-0156353_21	Structural annotation	PF05263, MF_00245, TIGR01636, COG1595	NA	NA
UHGV-0156353_22	PHROG	phrog_38815	NA	unknown function
UHGV-0156353_23	PHROG	phrog_35896	NA	unknown function
UHGV-0156353_24	PHROG	phrog_36825	NA	unknown function
UHGV-0156353_24	eggNOG-mapper	1262914.BN533_00206	DnaD domain protein	NA
UHGV-0156353_24	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0156353_24	Structural annotation	PF19481, PF04492, TIGR01610, COG5529	NA	NA
UHGV-0156353_25	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-0156353_25	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-0156353_25	UniRef90	UniRef90_R6IEU2	DNA polymerase III subunit beta	NA
UHGV-0156353_25	Structural annotation	PF02768, PF00712, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0156353_26	Structural annotation	NF007260	NA	NA
UHGV-0156353_27	Structural annotation	MF_02014, NF010723	NA	NA
UHGV-0156353_29	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0156353_29	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0156353_32	PHROG	phrog_585	NA	unknown function
UHGV-0156353_32	UniRef90	UniRef90_A0A7X7U6T8	NA	NA
UHGV-0156353_32	Pfam	PF10711	NA	DUF2513
UHGV-0156353_32	Structural annotation	PF10711, MF_01819, TIGR04176, COG1695	NA	NA
UHGV-0156353_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0156353_40	UniRef90	UniRef90_UPI001559E11A	helix-turn-helix transcriptional regulator	NA
UHGV-0156353_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0156353_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0156353_40	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0156353_42	UniRef90	UniRef90_UPI0006B52110	helix-turn-helix domain-containing protein	NA
UHGV-0156353_42	eggNOG-mapper	1408823.AXUS01000025_gene2653	NA	NA
UHGV-0156353_43	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0156353_43	UniRef90	UniRef90_A0A510K7H8	Abi-like protein	NA
UHGV-0156353_43	eggNOG-mapper	999423.HMPREF9161_01426	Abi-like protein	NA
UHGV-0156353_43	PADLOC	AbiD	AbiD	Abi
UHGV-0156353_43	COG	COG4823	Abortive infection bacteriophage resistance protein	NA