UHGV-0156433

Genome information

Genome length 24,272 bps

CDS count 51

Completeness 62.70% (medium-quality)

geNomad score 0.9777

Prediction confidence Confident

Genome information
Genome ID	UHGV-0156433
vOTU ID	vOTU-022115
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_463465
BioSample	SAMN06111965
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.70% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9777
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	-1.6
Jumbo phage	No

Genome content
Genome length	24,272 bps
GC content	29.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	89.12%
Average CDS length	426.82 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0156433_1	KOfam	K03086	rpoD; RNA polymerase primary sigma factor	NA
UHGV-0156433_1	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0156433_1	UniRef90	UniRef90_R6BEP9	RNA polymerase sigma factor SigA	NA
UHGV-0156433_1	eggNOG-mapper	555079.Toce_0933	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth	NA
UHGV-0156433_1	PADLOC	MzaA_00001	NA	mzaABCDE
UHGV-0156433_1	Pfam	PF03979	Sigma-70 factor, region 1.1	Sigma70_r1_1
UHGV-0156433_1	Pfam	PF00140	Sigma-70 factor, region 1.2	Sigma70_r1_2
UHGV-0156433_1	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0156433_1	Pfam	PF04539	Sigma-70 region 3	Sigma70_r3
UHGV-0156433_1	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0156433_1	NCBIFam	NF006666.0	RNA polymerase sigma factor RpoD	NA
UHGV-0156433_1	COG	COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	NA
UHGV-0156433_1	HAMAP	MF_00963	RNA polymerase sigma factor RpoD [rpoD]	NA
UHGV-0156433_3	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0156433_3	PHROG	phrog_95	integrase	integration and excision
UHGV-0156433_3	UniRef90	UniRef90_R6Y141	Site-specific recombinase DNA invertase Pin	NA
UHGV-0156433_3	eggNOG-mapper	580327.Tthe_0270	Resolvase, N terminal domain	NA
UHGV-0156433_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0156433_3	Pfam	PF07508	Recombinase	Recombinase
UHGV-0156433_3	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0156433_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0156433_3	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0156433_4	PHROG	phrog_87	metallo-protease	other
UHGV-0156433_4	UniRef90	UniRef90_A0A7X9HW64	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0156433_4	eggNOG-mapper	698758.AXY_01820	Zn peptidase	NA
UHGV-0156433_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0156433_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0156433_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0156433_5	UniRef90	UniRef90_A0A7W2A7S3	NA	NA
UHGV-0156433_5	Pfam	PF12686	NA	DUF3800
UHGV-0156433_5	Structural annotation	PF01351, MF_00052_A, TIGR00729, COG1039	NA	NA
UHGV-0156433_6	UniRef90	UniRef90_A0A8A3VI41	Zinc ribbon domain-containing protein	NA
UHGV-0156433_6	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0156433_7	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0156433_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0156433_7	UniRef90	UniRef90_A0A1Q6LHM3	HTH cro/C1-type domain-containing protein	NA
UHGV-0156433_7	eggNOG-mapper	697281.Mahau_2933	transcriptional regulator, XRE family	NA
UHGV-0156433_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0156433_7	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0156433_7	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0156433_8	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0156433_8	UniRef90	UniRef90_A0A2T0BQ53	HTH-type transcriptional regulator Xre	NA
UHGV-0156433_8	eggNOG-mapper	697281.Mahau_2932	PFAM helix-turn-helix domain protein	NA
UHGV-0156433_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0156433_8	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0156433_8	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0156433_13	Structural annotation	PF09943, COG3461	NA	NA
UHGV-0156433_15	PHROG	phrog_14970	NA	unknown function
UHGV-0156433_15	UniRef90	UniRef90_A0A3P6JH63	Essential recombination function protein	NA
UHGV-0156433_15	eggNOG-mapper	469604.HMPREF0946_00830	DNA recombination	NA
UHGV-0156433_15	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0156433_15	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0156433_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0156433_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0156433_16	UniRef90	UniRef90_R6YHT0	Single-stranded DNA-binding protein	NA
UHGV-0156433_16	eggNOG-mapper	1291050.JAGE01000001_gene1719	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0156433_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0156433_16	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0156433_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0156433_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0156433_16	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0156433_17	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0156433_17	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-0156433_17	eggNOG-mapper	411468.CLOSCI_00314	NA	NA
UHGV-0156433_17	Structural annotation	NF007281	NA	NA
UHGV-0156433_19	PHROG	phrog_9327	primosomal protein	DNA, RNA and nucleotide metabolism
UHGV-0156433_19	UniRef90	UniRef90_UPI001297E3E8	NA	NA
UHGV-0156433_19	eggNOG-mapper	927704.SELR_18440	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0156433_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0156433_20	PHROG	phrog_9804	NA	unknown function
UHGV-0156433_20	UniRef90	UniRef90_A0A3P6JF27	Loader and inhibitor of phage G40P	NA
UHGV-0156433_20	eggNOG-mapper	1499683.CCFF01000013_gene503	Loader and inhibitor of phage G40P	NA
UHGV-0156433_20	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0156433_20	Structural annotation	PF11417	NA	NA
UHGV-0156433_21	PHROG	phrog_1123	NA	unknown function
UHGV-0156433_21	UniRef90	UniRef90_A0A7X6P6Q9	DNA gyrase	NA
UHGV-0156433_21	eggNOG-mapper	445972.ANACOL_03346	NA	NA
UHGV-0156433_21	Structural annotation	PF03551, TIGR02719, COG1695	NA	NA
UHGV-0156433_24	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0156433_24	UniRef90	UniRef90_A0A7C9LJY9	NA	NA
UHGV-0156433_24	eggNOG-mapper	293826.Amet_2598	NA	NA
UHGV-0156433_24	Pfam	PF06356	NA	DUF1064
UHGV-0156433_24	Structural annotation	PF06356	NA	NA
UHGV-0156433_25	UniRef90	UniRef90_A0A1Q6L7Q8	NOB1_Zn_bind domain-containing protein	NA
UHGV-0156433_25	Pfam	PF08772	Nin one binding (NOB1) Zn-ribbon like	NOB1_Zn_bind
UHGV-0156433_25	Structural annotation	PF09947	NA	NA
UHGV-0156433_26	Structural annotation	PF09871, TIGR00739	NA	NA
UHGV-0156433_30	PHROG	phrog_17260	NA	unknown function
UHGV-0156433_30	eggNOG-mapper	1232449.BAHV02000018_gene1537	NA	NA
UHGV-0156433_39	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0156433_39	eggNOG-mapper	394503.Ccel_3300	NA	NA
UHGV-0156433_39	Structural annotation	PF02996	NA	NA
UHGV-0156433_40	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0156433_40	UniRef90	UniRef90_UPI000934E5E6	NA	NA
UHGV-0156433_40	eggNOG-mapper	999411.HMPREF1092_00897	NA	NA
UHGV-0156433_40	Pfam	PF14359	NA	DUF4406
UHGV-0156433_40	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0156433_41	PHROG	phrog_918	NA	unknown function
UHGV-0156433_41	UniRef90	UniRef90_UPI000F4ECE86	NA	NA
UHGV-0156433_41	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-0156433_41	Pfam	PF19791	NA	DUF6275
UHGV-0156433_41	Structural annotation	PF19791	NA	NA
UHGV-0156433_43	Structural annotation	PF13542	NA	NA
UHGV-0156433_44	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0156433_44	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0156433_44	UniRef90	UniRef90_A0A0M2NDA4	Phage terminase, large subunit	NA
UHGV-0156433_44	eggNOG-mapper	1232449.BAHV02000016_gene1824	NA	NA
UHGV-0156433_44	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0156433_44	COG	COG1783	Phage terminase large subunit	NA
UHGV-0156433_44	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0156433_46	PHROG	phrog_156	portal protein	head and packaging
UHGV-0156433_46	UniRef90	UniRef90_A0A8D9UHD1	Portal protein	NA
UHGV-0156433_46	eggNOG-mapper	1121091.AUMP01000003_gene2583	NA	NA
UHGV-0156433_46	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0156433_48	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0156433_48	UniRef90	UniRef90_A0A8D9UHB3	Major capsid protein	NA
UHGV-0156433_48	eggNOG-mapper	696281.Desru_1092	NA	NA
UHGV-0156433_48	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0156433_48	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0156433_50	eggNOG-mapper	1232449.BAHV02000016_gene1817	NA	NA