UHGV-0156436

Genome information

Genome length 30,366 bps

CDS count 57

Completeness 52.59% (medium-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-0156436
vOTU ID	vOTU-027748
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_489906
BioSample	SAMN06110353
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.59% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.39
Jumbo phage	No

Genome content
Genome length	30,366 bps
GC content	38.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	88.86%
Average CDS length	476.21 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0156436_1	UniRef90	UniRef90_R6G3J8	(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB	NA
UHGV-0156436_1	eggNOG-mapper	658088.HMPREF0987_00181	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	NA
UHGV-0156436_1	COG	COG0621	tRNA A37 methylthiotransferase MiaB	NA
UHGV-0156436_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0156436_2	PHROG	phrog_95	integrase	integration and excision
UHGV-0156436_2	UniRef90	UniRef90_UPI00131A09CC	recombinase family protein	NA
UHGV-0156436_2	eggNOG-mapper	411468.CLOSCI_00582	Recombinase	NA
UHGV-0156436_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0156436_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-0156436_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0156436_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0156436_2	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0156436_3	PHROG	phrog_9418	NA	unknown function
UHGV-0156436_3	eggNOG-mapper	411462.DORLON_00822	NA	NA
UHGV-0156436_3	Structural annotation	PF10233	NA	NA
UHGV-0156436_4	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0156436_4	Pfam	PF17854	FtsK alpha domain	FtsK_alpha
UHGV-0156436_5	PHROG	phrog_20886	NA	unknown function
UHGV-0156436_5	eggNOG-mapper	411462.DORLON_00820	NA	NA
UHGV-0156436_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0156436_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0156436_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0156436_6	UniRef90	UniRef90_A0A415D4V1	XRE family transcriptional regulator	NA
UHGV-0156436_6	eggNOG-mapper	476272.RUMHYD_02826	TRANSCRIPTIONal	NA
UHGV-0156436_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0156436_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0156436_6	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0156436_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0156436_7	UniRef90	UniRef90_UPI001898A404	helix-turn-helix transcriptional regulator	NA
UHGV-0156436_7	eggNOG-mapper	1304866.K413DRAFT_0833	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0156436_7	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0156436_7	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0156436_10	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0156436_10	UniRef90	UniRef90_UPI0018972D4E	ORF6C domain-containing protein	NA
UHGV-0156436_10	eggNOG-mapper	596329.HMPREF0631_1352	BRO family, N-terminal domain protein	NA
UHGV-0156436_10	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0156436_10	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0156436_10	COG	COG3617	Prophage antirepressor	NA
UHGV-0156436_10	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0156436_11	PHROG	phrog_3502	NA	unknown function
UHGV-0156436_11	UniRef90	UniRef90_A0A6L5X328	MarR family transcriptional regulator	NA
UHGV-0156436_11	eggNOG-mapper	1499683.CCFF01000013_gene198	LexA DNA binding domain	NA
UHGV-0156436_11	Pfam	PF04703	FaeA-like protein	FaeA
UHGV-0156436_11	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0156436_11	Structural annotation	PF01726, MF_00732, TIGR02944, COG1321	NA	NA
UHGV-0156436_15	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0156436_15	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0156436_15	UniRef90	UniRef90_UPI001319D695	AAA family ATPase	NA
UHGV-0156436_15	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-0156436_15	Pfam	PF13476	AAA domain	AAA_23
UHGV-0156436_15	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0156436_15	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0156436_17	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0156436_17	UniRef90	UniRef90_A0A173SDT4	RecT family	NA
UHGV-0156436_17	eggNOG-mapper	658655.HMPREF0988_00886	NA	NA
UHGV-0156436_17	Pfam	PF03837	RecT family	RecT
UHGV-0156436_17	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0156436_18	KOfam	K06940	NA	NA
UHGV-0156436_18	PHROG	phrog_32498	NA	unknown function
UHGV-0156436_18	UniRef90	UniRef90_A0A415D557	YkgJ family cysteine cluster protein	NA
UHGV-0156436_18	eggNOG-mapper	476272.RUMHYD_03327	Putative zinc- or iron-chelating domain	NA
UHGV-0156436_18	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0156436_19	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0156436_19	UniRef90	UniRef90_A0A2X3IGT0	Metallo-beta-lactamase domain protein	NA
UHGV-0156436_19	eggNOG-mapper	658655.HMPREF0988_00883	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0156436_19	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0156436_20	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0156436_20	UniRef90	UniRef90_A0A415D4T3	Lactamase_B domain-containing protein	NA
UHGV-0156436_20	eggNOG-mapper	658655.HMPREF0988_00882	Metallo-beta-lactamase superfamily	NA
UHGV-0156436_20	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0156436_20	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-0156436_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0156436_22	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0156436_22	UniRef90	UniRef90_A0A415D4W7	Single-stranded DNA-binding protein	NA
UHGV-0156436_22	eggNOG-mapper	411460.RUMTOR_02590	NA	NA
UHGV-0156436_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0156436_22	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0156436_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0156436_22	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0156436_22	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0156436_25	eggNOG-mapper	476272.RUMHYD_02840	NA	NA
UHGV-0156436_25	Structural annotation	PF19962, COG1579	NA	NA
UHGV-0156436_26	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0156436_26	UniRef90	UniRef90_A0A173SAL3	ERCC4 domain-containing protein	NA
UHGV-0156436_26	eggNOG-mapper	1232453.BAIF02000057_gene1143	NA	NA
UHGV-0156436_26	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0156436_26	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0156436_27	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0156436_27	UniRef90	UniRef90_UPI001D1B9EE5	DnaD domain protein	NA
UHGV-0156436_27	eggNOG-mapper	1391647.AVSV01000022_gene2531	DnaD domain protein	NA
UHGV-0156436_27	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0156436_27	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0156436_28	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0156436_28	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0156436_28	UniRef90	UniRef90_UPI0018977FCD	AAA family ATPase	NA
UHGV-0156436_28	eggNOG-mapper	1232453.BAIF02000057_gene1145	DNA replication initiation	NA
UHGV-0156436_28	Pfam	PF13481	AAA domain	AAA_25
UHGV-0156436_28	COG	COG1241	DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family	NA
UHGV-0156436_28	Structural annotation	PF03796, PF16793, MF_01498, MF_00700, NF004109, NF040562, COG0305, COG1467	NA	NA
UHGV-0156436_30	PHROG	phrog_7488	NA	unknown function
UHGV-0156436_30	Structural annotation	COG2139	NA	NA
UHGV-0156436_32	Structural annotation	PF17354	NA	NA
UHGV-0156436_33	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0156436_33	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0156436_33	UniRef90	UniRef90_A0A373SW63	PAPS_reduct domain-containing protein	NA
UHGV-0156436_33	eggNOG-mapper	1235800.C819_02256	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0156436_33	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0156436_33	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0156436_33	Structural annotation	PF01507, MF_00063, TIGR00434, COG0175	NA	NA
UHGV-0156436_34	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0156436_34	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0156436_34	UniRef90	UniRef90_A0A373MWF0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0156436_34	eggNOG-mapper	742740.HMPREF9474_04317	C-5 cytosine-specific DNA methylase	NA
UHGV-0156436_34	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0156436_34	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0156436_34	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0156436_34	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0156436_37	PHROG	phrog_2600	NA	unknown function
UHGV-0156436_37	UniRef90	UniRef90_A0A401UUL1	NA	NA
UHGV-0156436_37	eggNOG-mapper	1298920.KI911353_gene2720	NA	NA
UHGV-0156436_39	PHROG	phrog_924	NA	unknown function
UHGV-0156436_39	UniRef90	UniRef90_A0A893WE10	NA	NA
UHGV-0156436_39	eggNOG-mapper	411461.DORFOR_01155	NA	NA
UHGV-0156436_39	Pfam	PF04448	NA	DUF551
UHGV-0156436_39	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0156436_40	PHROG	phrog_20593	NA	unknown function
UHGV-0156436_42	PHROG	phrog_22292	NA	unknown function
UHGV-0156436_43	PHROG	phrog_8684	NA	unknown function
UHGV-0156436_43	UniRef90	UniRef90_UPI001D0293FA	YopX family protein	NA
UHGV-0156436_43	eggNOG-mapper	1235800.C819_02639	YopX protein	NA
UHGV-0156436_43	Pfam	PF09643	YopX protein	YopX
UHGV-0156436_43	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0156436_46	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0156436_46	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0156436_46	UniRef90	UniRef90_A0A373KP38	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0156436_46	eggNOG-mapper	1236976.JCM16418_5019	dUTPase	NA
UHGV-0156436_46	Pfam	PF00692	dUTPase	dUTPase
UHGV-0156436_46	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0156436_46	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0156436_52	UniRef90	UniRef90_A0A893WAT2	J domain-containing protein	NA
UHGV-0156436_52	eggNOG-mapper	500632.CLONEX_04013	DnaJ molecular chaperone homology domain	NA
UHGV-0156436_52	Pfam	PF18847	Large polyvalent protein associated domain 29	LPD29
UHGV-0156436_52	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0156436_52	Structural annotation	PF18847	NA	NA
UHGV-0156436_54	PHROG	phrog_31631	NA	unknown function
UHGV-0156436_55	eggNOG-mapper	1235799.C818_04245	NA	NA
UHGV-0156436_56	Structural annotation	PF13107	NA	NA