UHGV-0156557

Genome information

Genome length 59,321 bps

CDS count 99

Completeness 99.90% (high-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0156557
vOTU ID	vOTU-068810
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_474311
BioSample	SAMN06115496
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.06
Jumbo phage	No

Genome content
Genome length	59,321 bps
GC content	48.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	99
CDS density	84.20%
Average CDS length	506.73 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0156557_2	PHROG	phrog_1382	NA	unknown function
UHGV-0156557_3	KOfam	K07273	acm; lysozyme	NA
UHGV-0156557_3	PHROG	phrog_291	endolysin	lysis
UHGV-0156557_3	UniRef90	UniRef90_E2ZES5	Glycosyl hydrolase family 25	NA
UHGV-0156557_3	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0156557_3	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0156557_3	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0156557_3	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0156557_4	PHROG	phrog_1863	NA	unknown function
UHGV-0156557_4	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0156557_5	PHROG	phrog_15303	NA	unknown function
UHGV-0156557_5	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0156557_6	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0156557_13	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0156557_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0156557_13	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0156557_13	Structural annotation	PF01381, TIGR03070, COG1396	NA	NA
UHGV-0156557_14	PHROG	phrog_21718	NA	unknown function
UHGV-0156557_17	PHROG	phrog_16490	NA	unknown function
UHGV-0156557_17	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0156557_18	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0156557_19	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0156557_20	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-0156557_22	Structural annotation	NF010188	NA	NA
UHGV-0156557_23	Structural annotation	PF07878	NA	NA
UHGV-0156557_25	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0156557_25	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0156557_25	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-0156557_25	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0156557_25	Pfam	PF13614	AAA domain	AAA_31
UHGV-0156557_25	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0156557_25	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0156557_26	PHROG	phrog_60	NA	unknown function
UHGV-0156557_26	UniRef90	UniRef90_A0A316RLR0	NA	NA
UHGV-0156557_26	Pfam	PF04448	NA	DUF551
UHGV-0156557_26	Structural annotation	NF041588	NA	NA
UHGV-0156557_27	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0156557_27	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0156557_27	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0156557_27	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0156557_27	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0156557_27	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0156557_27	Structural annotation	PF01051, PF21205, NF038290, COG5527	NA	NA
UHGV-0156557_28	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0156557_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0156557_28	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0156557_28	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0156557_31	UniRef90	UniRef90_A0A358M3D8	HTH cro/C1-type domain-containing protein	NA
UHGV-0156557_31	eggNOG-mapper	610130.Closa_1361	Helix-turn-helix XRE-family like proteins	NA
UHGV-0156557_31	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0156557_31	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0156557_32	UniRef90	UniRef90_UPI001956DCC9	helix-turn-helix transcriptional regulator	NA
UHGV-0156557_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0156557_32	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0156557_33	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0156557_33	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0156557_33	UniRef90	UniRef90_R5ANG2	Phage antirepressor protein	NA
UHGV-0156557_33	eggNOG-mapper	697284.ERIC2_c10480	BRO family, N-terminal domain	NA
UHGV-0156557_33	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0156557_33	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0156557_33	COG	COG3617	Prophage antirepressor	NA
UHGV-0156557_33	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0156557_34	Structural annotation	PF10922	NA	NA
UHGV-0156557_36	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0156557_36	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0156557_38	Structural annotation	PF14143	NA	NA
UHGV-0156557_39	KOfam	K07738	nrdR; transcriptional repressor NrdR	NA
UHGV-0156557_39	eggNOG-mapper	1123399.AQVE01000002_gene2370	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-0156557_39	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-0156557_39	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0156557_39	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0156557_41	Pfam	PF13451	Probable zinc-ribbon domain	zf-trcl
UHGV-0156557_41	COG	COG1278	Cold shock protein, CspA family	NA
UHGV-0156557_41	Structural annotation	PF13451	NA	NA
UHGV-0156557_42	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0156557_42	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-0156557_42	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-0156557_42	Pfam	PF04404	ERF superfamily	ERF
UHGV-0156557_42	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0156557_43	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0156557_43	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0156557_43	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-0156557_43	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0156557_43	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0156557_43	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0156557_43	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0156557_43	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0156557_43	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0156557_44	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0156557_44	UniRef90	UniRef90_E2ZNS5	Siphovirus Gp157	NA
UHGV-0156557_44	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-0156557_44	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0156557_44	Structural annotation	PF05565	NA	NA
UHGV-0156557_45	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0156557_45	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0156557_45	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0156557_45	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0156557_45	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0156557_45	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0156557_45	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0156557_45	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0156557_45	Structural annotation	PF00145, TIGR00675	NA	NA
UHGV-0156557_48	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0156557_48	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0156557_48	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0156557_48	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0156557_53	Structural annotation	PF16677	NA	NA
UHGV-0156557_54	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-0156557_54	eggNOG-mapper	1291050.JAGE01000001_gene2058	restriction endonuclease	NA
UHGV-0156557_54	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-0156557_54	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0156557_62	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0156557_62	Structural annotation	PF14354	NA	NA
UHGV-0156557_63	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0156557_63	Pfam	PF19808	NA	DUF6291
UHGV-0156557_63	Structural annotation	PF19808	NA	NA
UHGV-0156557_64	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0156557_64	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0156557_64	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-0156557_64	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0156557_64	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0156557_64	COG	COG0305	Replicative DNA helicase	NA
UHGV-0156557_64	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0156557_66	PHROG	phrog_1709	NA	unknown function
UHGV-0156557_66	eggNOG-mapper	1280686.AUKE01000002_gene1328	NA	NA
UHGV-0156557_68	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0156557_72	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0156557_72	Structural annotation	PF12869, MF_00720, NF040991, COG4085	NA	NA
UHGV-0156557_73	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0156557_73	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0156557_73	UniRef90	UniRef90_A0A3E2XCY2	Bro-N domain-containing protein	NA
UHGV-0156557_73	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-0156557_73	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0156557_73	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0156557_73	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0156557_74	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-0156557_76	UniRef90	UniRef90_A0A417DZ16	HTH cro/C1-type domain-containing protein	NA
UHGV-0156557_76	Pfam	PF13744	Helix-turn-helix domain	HTH_37
UHGV-0156557_76	Structural annotation	PF20075, TIGR02612, COG1396	NA	NA
UHGV-0156557_77	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0156557_77	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0156557_77	UniRef90	UniRef90_A0A3D0LYX8	Resolvase	NA
UHGV-0156557_77	eggNOG-mapper	1410633.JHWR01000012_gene95	Resolvase, N terminal domain	NA
UHGV-0156557_77	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0156557_77	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0156557_77	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0156557_79	Structural annotation	PF09202, MF_01177, TIGR02702, COG1846	NA	NA
UHGV-0156557_80	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0156557_80	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0156557_80	UniRef90	UniRef90_UPI00067F3ABF	RNA-splicing ligase RtcB	NA
UHGV-0156557_80	eggNOG-mapper	1211844.CBLM010000044_gene358	tRNA-splicing ligase RtcB	NA
UHGV-0156557_80	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0156557_80	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0156557_80	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0156557_81	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0156557_81	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-0156557_81	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0156557_81	COG	COG5410	NA	NA
UHGV-0156557_81	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0156557_83	PHROG	phrog_64	portal protein	head and packaging
UHGV-0156557_83	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0156557_83	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0156557_83	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0156557_83	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0156557_84	UniRef90	UniRef90_UPI0018A09237	NA	NA
UHGV-0156557_84	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0156557_84	Structural annotation	PF14359, NF040588, COG3613	NA	NA
UHGV-0156557_87	PHROG	phrog_29	major head protein	head and packaging
UHGV-0156557_87	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0156557_87	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0156557_87	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0156557_87	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0156557_88	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0156557_88	Structural annotation	PF05135	NA	NA
UHGV-0156557_89	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0156557_89	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0156557_91	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0156557_92	PHROG	phrog_158	major tail protein	tail
UHGV-0156557_92	UniRef90	UniRef90_UPI001D06C8CA	phage tail protein	NA
UHGV-0156557_92	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-0156557_92	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0156557_93	UniRef90	UniRef90_UPI00164D364F	NA	NA
UHGV-0156557_93	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0156557_93	Pfam	PF16478	NA	DUF5055
UHGV-0156557_93	Structural annotation	PF16478	NA	NA
UHGV-0156557_94	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0156557_95	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0156557_95	UniRef90	UniRef90_A0A318EME6	Phage-related protein	NA
UHGV-0156557_95	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0156557_95	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0156557_96	PHROG	phrog_1194	NA	unknown function
UHGV-0156557_96	eggNOG-mapper	665956.HMPREF1032_03629	NA	NA
UHGV-0156557_96	Pfam	PF20458	NA	DUF6711
UHGV-0156557_96	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0156557_97	PHROG	phrog_13879	NA	unknown function
UHGV-0156557_97	eggNOG-mapper	324057.Pjdr2_1554	NA	NA
UHGV-0156557_97	Pfam	PF19789	NA	DUF6273
UHGV-0156557_97	Structural annotation	PF14594, PF19789, PF03256, PF09134, NF033848, COG3500, COG5156	NA	NA
UHGV-0156557_98	PHROG	phrog_18725	NA	unknown function
UHGV-0156557_98	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0156557_99	eggNOG-mapper	748224.HMPREF9436_00405	domain, Protein	NA
UHGV-0156557_99	COG	COG5492	NA	NA