UHGV-0156616

Genome information

Genome length 31,606 bps

CDS count 44

Completeness 94.48% (high-quality)

geNomad score 0.9693

Prediction confidence Confident

Genome information
Genome ID	UHGV-0156616
vOTU ID	vOTU-009171
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_473058
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.48% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9693
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.87
Jumbo phage	No

Genome content
Genome length	31,606 bps
GC content	31.21%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	94.08%
Average CDS length	678.82 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0156616_2	PHROG	phrog_18996	NA	unknown function
UHGV-0156616_2	UniRef90	UniRef90_UPI001C3B7CE9	Prevent-host-death protein	NA
UHGV-0156616_2	eggNOG-mapper	864563.HMPREF9166_0106	NA	NA
UHGV-0156616_3	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0156616_3	PHROG	phrog_435	endolysin	lysis
UHGV-0156616_3	UniRef90	UniRef90_A0A1H8EGV1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0156616_3	eggNOG-mapper	1232428.CAVO010000002_gene2340	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0156616_3	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0156616_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0156616_3	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0156616_4	PHROG	phrog_199	holin	lysis
UHGV-0156616_4	UniRef90	UniRef90_A0A1H8EGR7	Toxin secretion/phage lysis holin	NA
UHGV-0156616_4	eggNOG-mapper	1064535.MELS_1118	Bacteriophage holin family	NA
UHGV-0156616_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0156616_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0156616_4	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0156616_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0156616_6	eggNOG-mapper	568816.Acin_1300	NA	NA
UHGV-0156616_7	KOfam	K14059	int; integrase	NA
UHGV-0156616_7	PHROG	phrog_1	integrase	integration and excision
UHGV-0156616_7	UniRef90	UniRef90_UPI00195D001E	site-specific integrase	NA
UHGV-0156616_7	eggNOG-mapper	1273103.NM10_01678	Phage integrase family	NA
UHGV-0156616_7	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0156616_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0156616_7	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0156616_7	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0156616_8	PHROG	phrog_6465	tail protein	tail
UHGV-0156616_8	UniRef90	UniRef90_UPI000E53CCA6	VCBS domain-containing protein	NA
UHGV-0156616_8	eggNOG-mapper	411490.ANACAC_00723	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0156616_8	COG	COG4675	Phage tail collar domain	NA
UHGV-0156616_9	PHROG	phrog_6465	tail protein	tail
UHGV-0156616_9	UniRef90	UniRef90_UPI000E53CCA6	VCBS domain-containing protein	NA
UHGV-0156616_9	eggNOG-mapper	266779.Meso_0240	Phage Tail Collar Domain	NA
UHGV-0156616_9	COG	COG4675	Phage tail collar domain	NA
UHGV-0156616_10	PHROG	phrog_5717	tail protein	tail
UHGV-0156616_11	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0156616_11	UniRef90	UniRef90_UPI001CD684CA	phage tail protein	NA
UHGV-0156616_11	eggNOG-mapper	1042156.CXIVA_07170	tail collar domain protein	NA
UHGV-0156616_11	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0156616_11	COG	COG4675	Phage tail collar domain	NA
UHGV-0156616_11	Structural annotation	PF12571, COG5301	NA	NA
UHGV-0156616_12	PHROG	phrog_521	tail protein	tail
UHGV-0156616_12	UniRef90	UniRef90_A0A412CHL4	NA	NA
UHGV-0156616_12	eggNOG-mapper	1273103.NM10_00994	NA	NA
UHGV-0156616_12	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0156616_12	COG	COG3778	NA	NA
UHGV-0156616_12	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0156616_13	PHROG	phrog_6	baseplate protein	tail
UHGV-0156616_13	UniRef90	UniRef90_A0A412CI32	Baseplate_J domain-containing protein	NA
UHGV-0156616_13	eggNOG-mapper	1232428.CAVO010000003_gene996	Baseplate J-like protein	NA
UHGV-0156616_13	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0156616_13	COG	COG3299	NA	NA
UHGV-0156616_13	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0156616_14	PHROG	phrog_120	baseplate protein	tail
UHGV-0156616_14	UniRef90	UniRef90_A0A412CHX1	NA	NA
UHGV-0156616_14	eggNOG-mapper	1232428.CAVO010000003_gene997	NA	NA
UHGV-0156616_14	Pfam	PF10934	NA	DUF2634
UHGV-0156616_14	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0156616_14	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0156616_15	PHROG	phrog_579	NA	unknown function
UHGV-0156616_15	UniRef90	UniRef90_A0A412CHC2	NA	NA
UHGV-0156616_15	eggNOG-mapper	1232428.CAVO010000003_gene998	NA	NA
UHGV-0156616_15	Pfam	PF10844	NA	DUF2577
UHGV-0156616_15	Structural annotation	PF10844	NA	NA
UHGV-0156616_16	PHROG	phrog_400	tail protein	tail
UHGV-0156616_16	UniRef90	UniRef90_A0A848BXY8	Lytic transglycosylase domain-containing protein	NA
UHGV-0156616_16	eggNOG-mapper	1232428.CAVO010000003_gene999	NLP P60 protein	NA
UHGV-0156616_16	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0156616_16	Structural annotation	PF14594, PF00877, NF033848, NF008096, COG3500	NA	NA
UHGV-0156616_17	PHROG	phrog_5184	NA	unknown function
UHGV-0156616_17	UniRef90	UniRef90_A0A0L0W6M8	LysM domain-containing protein	NA
UHGV-0156616_17	eggNOG-mapper	1232428.CAVO010000003_gene1000	LysM domain	NA
UHGV-0156616_17	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0156616_17	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0156616_17	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0156616_18	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0156616_18	UniRef90	UniRef90_A0A412CHP1	Phage tail tape measure protein	NA
UHGV-0156616_18	eggNOG-mapper	1232428.CAVO010000003_gene1001	Phage-related minor tail protein	NA
UHGV-0156616_18	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0156616_18	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0156616_18	COG	COG5283	Phage-related tail protein	NA
UHGV-0156616_18	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0156616_19	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0156616_19	UniRef90	UniRef90_A0A7Y2PM55	XkdN-like protein	NA
UHGV-0156616_19	eggNOG-mapper	568816.Acin_1336	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0156616_19	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0156616_19	Structural annotation	PF08890	NA	NA
UHGV-0156616_20	PHROG	phrog_365	tail protein	tail
UHGV-0156616_20	UniRef90	UniRef90_A0A412CHD4	Phage portal protein	NA
UHGV-0156616_20	eggNOG-mapper	1232428.CAVO010000003_gene1003	Phage tail tube protein	NA
UHGV-0156616_20	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0156616_20	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0156616_21	PHROG	phrog_1480	tail sheath	tail
UHGV-0156616_21	UniRef90	UniRef90_A0A412CH32	Phage tail sheath protein	NA
UHGV-0156616_21	eggNOG-mapper	1232428.CAVO010000003_gene1004	Phage tail sheath C-terminal domain	NA
UHGV-0156616_21	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0156616_21	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0156616_21	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0156616_22	PHROG	phrog_525	NA	unknown function
UHGV-0156616_22	Pfam	PF20765	NA	DUF6838
UHGV-0156616_22	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0156616_23	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0156616_23	UniRef90	UniRef90_A0A412CI38	HK97 gp10 family phage protein	NA
UHGV-0156616_23	eggNOG-mapper	1232428.CAVO010000003_gene1006	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0156616_23	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0156616_23	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0156616_24	PHROG	phrog_25	head closure Hc1	connector
UHGV-0156616_24	UniRef90	UniRef90_A0A412CHY1	Head-tail adaptor protein	NA
UHGV-0156616_24	eggNOG-mapper	1232428.CAVO010000003_gene1007	Phage head-tail joining protein	NA
UHGV-0156616_24	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0156616_24	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0156616_24	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0156616_24	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0156616_25	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0156616_25	UniRef90	UniRef90_A0A412CHC9	Phage gp6-like head-tail connector protein	NA
UHGV-0156616_25	eggNOG-mapper	66692.ABC1335	Phage gp6-like head-tail connector protein	NA
UHGV-0156616_25	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0156616_25	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0156616_25	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0156616_26	UniRef90	UniRef90_A0A412CHG4	Collagen-like protein	NA
UHGV-0156616_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0156616_27	UniRef90	UniRef90_A0A412CI12	Phage major capsid protein	NA
UHGV-0156616_27	eggNOG-mapper	1341151.ASZU01000004_gene260	Phage capsid family	NA
UHGV-0156616_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0156616_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0156616_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0156616_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0156616_28	KOfam	K06904	NA	NA
UHGV-0156616_28	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0156616_28	UniRef90	UniRef90_A0A412CHQ0	HK97 family phage prohead protease	NA
UHGV-0156616_28	eggNOG-mapper	1232428.CAVO010000003_gene1010	Caudovirus prohead serine protease	NA
UHGV-0156616_28	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0156616_28	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0156616_28	COG	COG3740	Phage head maturation protease	NA
UHGV-0156616_28	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0156616_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-0156616_29	UniRef90	UniRef90_A0A412CHK9	Phage portal protein	NA
UHGV-0156616_29	eggNOG-mapper	1232428.CAVO010000003_gene1011	Phage portal protein	NA
UHGV-0156616_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0156616_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0156616_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0156616_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0156616_30	UniRef90	UniRef90_A0A412CHE2	Terminase large subunit	NA
UHGV-0156616_30	eggNOG-mapper	1232428.CAVO010000003_gene1012	Phage Terminase	NA
UHGV-0156616_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0156616_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0156616_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0156616_30	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0156616_31	PHROG	phrog_1066	NA	unknown function
UHGV-0156616_31	eggNOG-mapper	1232428.CAVO010000003_gene1013	NA	NA
UHGV-0156616_31	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0156616_32	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0156616_32	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0156616_32	UniRef90	UniRef90_A0A412CHN3	HNH endonuclease	NA
UHGV-0156616_32	eggNOG-mapper	1089548.KI783301_gene3222	HNH endonuclease	NA
UHGV-0156616_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0156616_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0156616_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0156616_34	UniRef90	UniRef90_A0A412CHD7	NA	NA
UHGV-0156616_34	eggNOG-mapper	927704.SELR_11170	DNA-templated transcription, initiation	NA
UHGV-0156616_34	Pfam	PF07374	NA	DUF1492
UHGV-0156616_34	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0156616_34	Structural annotation	PF06530, TIGR01636, COG2739	NA	NA
UHGV-0156616_36	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0156616_36	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0156616_36	UniRef90	UniRef90_A0A412CHQ9	ParB domain-containing protein	NA
UHGV-0156616_36	eggNOG-mapper	1415774.U728_489	Belongs to the ParB family	NA
UHGV-0156616_36	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0156616_36	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0156616_37	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0156616_37	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0156616_37	UniRef90	UniRef90_A0A412CHM1	ParA family protein	NA
UHGV-0156616_37	eggNOG-mapper	1151292.QEW_0328	AAA domain	NA
UHGV-0156616_37	Pfam	PF13614	AAA domain	AAA_31
UHGV-0156616_37	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0156616_37	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0156616_40	KOfam	K03700	recU; recombination protein U	NA
UHGV-0156616_40	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0156616_40	UniRef90	UniRef90_A0A412CHF7	Holliday junction resolvase RecU	NA
UHGV-0156616_40	eggNOG-mapper	1151292.QEW_0324	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0156616_40	Pfam	PF03838	Recombination protein U	RecU
UHGV-0156616_40	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0156616_40	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0156616_41	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0156616_41	eggNOG-mapper	641107.CDLVIII_1314	NA	NA
UHGV-0156616_41	Structural annotation	PF11726	NA	NA
UHGV-0156616_44	KOfam	K18707	mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]	NA
UHGV-0156616_44	UniRef90	UniRef90_A0A174CV84	Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB	NA
UHGV-0156616_44	eggNOG-mapper	545697.HMPREF0216_03099	MiaB-like tRNA modifying enzyme	NA
UHGV-0156616_44	Pfam	PF00919	NA	UPF0004
UHGV-0156616_44	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0156616_44	Pfam	PF01938	TRAM domain	TRAM
UHGV-0156616_44	NCBIFam	TIGR00089.1	MiaB/RimO family radical SAM methylthiotransferase	NA
UHGV-0156616_44	COG	COG0621	tRNA A37 methylthiotransferase MiaB	NA