UHGV-0156620

Genome information

Genome length 13,695 bps

CDS count 19

Completeness 99.90% (high-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0156620
vOTU ID	vOTU-063519
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_453492
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	4
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.83
Jumbo phage	No

Genome content
Genome length	13,695 bps
GC content	52.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	19
CDS density	92.14%
Average CDS length	672.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0156620_1	KOfam	K02238	comEC; competence protein ComEC	NA
UHGV-0156620_1	PHROG	phrog_7043	tail protein	tail
UHGV-0156620_1	UniRef90	UniRef90_A0A0A2TK31	Hydroxyacylglutathione hydrolase	NA
UHGV-0156620_1	eggNOG-mapper	349161.Dred_2574	Metallo-beta-lactamase superfamily	NA
UHGV-0156620_1	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0156620_1	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0156620_3	PHROG	phrog_2038	upper collar connector	connector
UHGV-0156620_3	UniRef90	UniRef90_A0A2Z4GUB7	Upper collar protein	NA
UHGV-0156620_3	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0156620_3	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0156620_3	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0156620_4	Structural annotation	PF20934	NA	NA
UHGV-0156620_5	Structural annotation	PF21703, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0156620_7	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0156620_7	PHROG	phrog_435	endolysin	lysis
UHGV-0156620_7	UniRef90	UniRef90_A0A810PUG7	SPOR domain-containing protein	NA
UHGV-0156620_7	eggNOG-mapper	1391646.AVSU01000099_gene342	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0156620_7	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0156620_7	Pfam	PF05036	SPOR domain	SPOR
UHGV-0156620_7	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0156620_7	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0156620_8	UniRef90	UniRef90_UPI001C109117	phage holin family protein	NA
UHGV-0156620_8	eggNOG-mapper	471855.Shel_15390	Bacteriophage holin family	NA
UHGV-0156620_8	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0156620_8	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0156620_8	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0156620_9	UniRef90	UniRef90_A0A1Q9JGI6	RHH_1 domain-containing protein	NA
UHGV-0156620_9	eggNOG-mapper	1095750.HMPREF9970_2261	NA	NA
UHGV-0156620_9	Structural annotation	PF03869, NF041793, COG4691	NA	NA
UHGV-0156620_10	PHROG	phrog_2150	terminase	head and packaging
UHGV-0156620_10	UniRef90	UniRef90_A0A843GFY2	Phage DNA encapsidation protein	NA
UHGV-0156620_10	eggNOG-mapper	10747.Q38007_BPCP1	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0156620_10	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0156620_10	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0156620_11	UniRef90	UniRef90_A0A2G9YQC4	Septation protein spoVG	NA
UHGV-0156620_11	Pfam	PF04026	SpoVG	SpoVG
UHGV-0156620_11	COG	COG2088	DNA-binding protein SpoVG, cell septation regulator	NA
UHGV-0156620_11	Structural annotation	PF04026, MF_00819, NF009749, COG2088	NA	NA
UHGV-0156620_13	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0156620_13	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0156620_13	UniRef90	UniRef90_A0A843GHP1	DNA-directed DNA polymerase	NA
UHGV-0156620_13	eggNOG-mapper	1128071.G9J3H2_9CAUD	nucleotide binding	NA
UHGV-0156620_13	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0156620_13	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA
UHGV-0156620_18	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0156620_18	UniRef90	UniRef90_UPI000B356992	adenine methyltransferase	NA
UHGV-0156620_18	eggNOG-mapper	760568.Desku_0784	DNA N-6-adenine-methyltransferase	NA
UHGV-0156620_18	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0156620_18	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0156620_18	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA