UHGV-0156730

Genome information

Genome length 21,360 bps

CDS count 35

Completeness 52.82% (medium-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-0156730
vOTU ID	vOTU-027763
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_499055
BioSample	SAMN06110202
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.82% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.62
Jumbo phage	No

Genome content
Genome length	21,360 bps
GC content	59.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	94.87%
Average CDS length	580.54 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0156730_1	UniRef90	UniRef90_UPI00080BF96B	molecular chaperone GrpE	NA
UHGV-0156730_1	Structural annotation	PF01047	NA	NA
UHGV-0156730_3	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0156730_3	UniRef90	UniRef90_A0A412K8R2	Endonuclease	NA
UHGV-0156730_3	eggNOG-mapper	1437610.BREU_1416	YqaJ-like viral recombinase domain	NA
UHGV-0156730_3	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0156730_3	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0156730_3	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0156730_3	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0156730_4	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0156730_4	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0156730_4	UniRef90	UniRef90_A0A564S321	Protein RecT	NA
UHGV-0156730_4	eggNOG-mapper	1341695.BBOMB_1056	RecT family	NA
UHGV-0156730_4	Pfam	PF03837	RecT family	RecT
UHGV-0156730_4	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0156730_4	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0156730_4	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0156730_5	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0156730_5	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0156730_5	UniRef90	UniRef90_A0A413KAY2	Single-stranded DNA-binding protein	NA
UHGV-0156730_5	eggNOG-mapper	78346.BRUM_0409	Single-strand binding protein family	NA
UHGV-0156730_5	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0156730_5	NCBIFam	NF005851.0	single-stranded DNA-binding protein	NA
UHGV-0156730_5	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0156730_5	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0156730_5	Structural annotation	PF00436, MF_00984, NF005851, COG2965	NA	NA
UHGV-0156730_6	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0156730_6	UniRef90	UniRef90_A0A1X2ZJJ9	NA	NA
UHGV-0156730_6	eggNOG-mapper	1193128.A200_07809	NA	NA
UHGV-0156730_6	Structural annotation	PF13588, COG1591	NA	NA
UHGV-0156730_7	UniRef90	UniRef90_A0A1X2ZKC5	Transposase	NA
UHGV-0156730_7	eggNOG-mapper	78346.BRUM_0407	NA	NA
UHGV-0156730_7	Structural annotation	PF01815	NA	NA
UHGV-0156730_9	eggNOG-mapper	1394176.AWUO01000011_gene389	NA	NA
UHGV-0156730_9	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0156730_11	UniRef90	UniRef90_A0A564VVG1	TetR_C_3 domain-containing protein	NA
UHGV-0156730_12	UniRef90	UniRef90_UPI001CFBB2F5	zinc ribbon domain-containing protein	NA
UHGV-0156730_13	PHROG	phrog_2149	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0156730_13	eggNOG-mapper	78346.BRUM_0405	NA	NA
UHGV-0156730_13	Structural annotation	PF01475, TIGR01610, COG0735	NA	NA
UHGV-0156730_14	UniRef90	UniRef90_UPI001CFD288C	GTP-binding protein	NA
UHGV-0156730_16	PHROG	phrog_3641	NA	unknown function
UHGV-0156730_16	eggNOG-mapper	398513.BBNG_00833	NA	NA
UHGV-0156730_18	UniRef90	UniRef90_A0A412K9M9	Antitoxin	NA
UHGV-0156730_18	eggNOG-mapper	78346.BRUM_0403	NA	NA
UHGV-0156730_19	PHROG	phrog_908	NA	unknown function
UHGV-0156730_19	UniRef90	UniRef90_A0A072N4W7	PhnA protein	NA
UHGV-0156730_19	eggNOG-mapper	78346.BRUM_0402	NA	NA
UHGV-0156730_19	Structural annotation	COG0789	NA	NA
UHGV-0156730_20	UniRef90	UniRef90_A0A6B8LMD9	Hypoyhetical protein	NA
UHGV-0156730_21	PHROG	phrog_226	minor tail protein	tail
UHGV-0156730_21	UniRef90	UniRef90_A0A3G3M4U7	Terminase small subunit	NA
UHGV-0156730_21	eggNOG-mapper	1437603.BMON_0142	NA	NA
UHGV-0156730_22	PHROG	phrog_19179	terminase large subunit	head and packaging
UHGV-0156730_22	UniRef90	UniRef90_A0A087CAG9	Gp22	NA
UHGV-0156730_22	eggNOG-mapper	1437603.BMON_0141	Terminase	NA
UHGV-0156730_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0156730_22	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0156730_23	PHROG	phrog_104	portal protein	head and packaging
UHGV-0156730_23	UniRef90	UniRef90_A0A087DRQ5	Phage portal protein gp6-like protein	NA
UHGV-0156730_23	eggNOG-mapper	1437603.BMON_0140	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0156730_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0156730_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0156730_24	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-0156730_24	UniRef90	UniRef90_A0A8A9ICF6	CdiA_C domain-containing protein	NA
UHGV-0156730_24	eggNOG-mapper	1437603.BMON_0139	NA	NA
UHGV-0156730_25	PHROG	phrog_1793	head scaffolding protein	head and packaging
UHGV-0156730_25	UniRef90	UniRef90_UPI001115A562	NA	NA
UHGV-0156730_25	eggNOG-mapper	1437603.BMON_0138	NA	NA
UHGV-0156730_26	PHROG	phrog_212	major head protein	head and packaging
UHGV-0156730_26	UniRef90	UniRef90_UPI001038A13F	phage capsid protein	NA
UHGV-0156730_26	eggNOG-mapper	1437603.BMON_0137	NA	NA
UHGV-0156730_26	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0156730_27	PHROG	phrog_15682	NA	unknown function
UHGV-0156730_28	UniRef90	UniRef90_A0A072MRM0	Head protein	NA
UHGV-0156730_29	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0156730_29	UniRef90	UniRef90_I3BBT3	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0156730_29	eggNOG-mapper	1437603.BMON_0136	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0156730_29	Pfam	PF09355	NA	Phage_Gp19
UHGV-0156730_29	Structural annotation	PF09355	NA	NA
UHGV-0156730_30	PHROG	phrog_13779	NA	unknown function
UHGV-0156730_30	UniRef90	UniRef90_UPI00192840F4	NA	NA
UHGV-0156730_30	eggNOG-mapper	1680.BADO_1238	NA	NA
UHGV-0156730_30	Pfam	PF19586	NA	DUF6093
UHGV-0156730_30	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0156730_31	PHROG	phrog_19109	NA	unknown function
UHGV-0156730_31	eggNOG-mapper	1680.BADO_1237	NA	NA
UHGV-0156730_31	Structural annotation	TIGR01725	NA	NA
UHGV-0156730_32	UniRef90	UniRef90_A0A3E5HKK5	Transcriptional regulator	NA
UHGV-0156730_32	eggNOG-mapper	1680.BADO_1236	NA	NA
UHGV-0156730_32	Structural annotation	PF06141	NA	NA
UHGV-0156730_33	PHROG	phrog_2491	major tail protein	tail
UHGV-0156730_33	UniRef90	UniRef90_A0A076JPN9	Gp28	NA
UHGV-0156730_33	eggNOG-mapper	1680.BADO_1235	NA	NA
UHGV-0156730_33	Structural annotation	PF16463, TIGR02241, COG3498	NA	NA
UHGV-0156730_34	UniRef90	UniRef90_A0A076JN63	DNAase primase	NA
UHGV-0156730_34	eggNOG-mapper	1680.BADO_1234	NA	NA
UHGV-0156730_34	Structural annotation	PF08890	NA	NA
UHGV-0156730_35	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0156730_35	UniRef90	UniRef90_A0A6B8LK75	Phage tail protein	NA
UHGV-0156730_35	eggNOG-mapper	1680.BADO_1232	Phage-related minor tail protein	NA
UHGV-0156730_35	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0156730_35	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0156730_35	COG	COG5283	Phage-related tail protein	NA
UHGV-0156730_35	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA