UHGV-0156734

Genome information

Genome length 32,960 bps

CDS count 54

Completeness 78.35% (medium-quality)

geNomad score 0.9759

Prediction confidence Confident

Genome information
Genome ID	UHGV-0156734
vOTU ID	vOTU-027764
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_467522
BioSample	SAMN06111958
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9759
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.81
Jumbo phage	No

Genome content
Genome length	32,960 bps
GC content	46.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	91.61%
Average CDS length	562.33 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0156734_1	PHROG	phrog_30004	NA	unknown function
UHGV-0156734_1	eggNOG-mapper	411902.CLOBOL_05647	nuclear chromosome segregation	NA
UHGV-0156734_1	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0156734_2	PHROG	phrog_521	tail protein	tail
UHGV-0156734_2	UniRef90	UniRef90_A0A415VS93	NA	NA
UHGV-0156734_2	eggNOG-mapper	1408823.AXUS01000024_gene2734	NA	NA
UHGV-0156734_2	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0156734_2	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0156734_2	Structural annotation	PF10076, TIGR01634, COG3778	NA	NA
UHGV-0156734_3	PHROG	phrog_6	baseplate protein	tail
UHGV-0156734_3	UniRef90	UniRef90_A0A415VS85	Phage tail protein	NA
UHGV-0156734_3	eggNOG-mapper	1095750.HMPREF9970_2282	baseplate J-like protein	NA
UHGV-0156734_3	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0156734_3	COG	COG3299	NA	NA
UHGV-0156734_3	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0156734_4	PHROG	phrog_120	baseplate protein	tail
UHGV-0156734_4	UniRef90	UniRef90_A0A3A6K1J8	NA	NA
UHGV-0156734_4	eggNOG-mapper	1095750.HMPREF9970_2281	NA	NA
UHGV-0156734_4	Pfam	PF10934	NA	DUF2634
UHGV-0156734_4	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0156734_4	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0156734_5	UniRef90	UniRef90_UPI0016471BA3	NA	NA
UHGV-0156734_5	Pfam	PF10844	NA	DUF2577
UHGV-0156734_5	Structural annotation	PF10844	NA	NA
UHGV-0156734_6	PHROG	phrog_400	tail protein	tail
UHGV-0156734_6	UniRef90	UniRef90_UPI001D0F5B5C	NlpC/P60 family protein	NA
UHGV-0156734_6	eggNOG-mapper	1095750.HMPREF9970_2279	NLP P60 protein	NA
UHGV-0156734_6	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0156734_6	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0156734_7	KOfam	K21687	rpfA; resuscitation-promoting factor RpfA	NA
UHGV-0156734_7	PHROG	phrog_380	endolysin	lysis
UHGV-0156734_7	UniRef90	UniRef90_A0A3A6K8I1	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0156734_7	eggNOG-mapper	1095750.HMPREF9970_2278	LysM domain	NA
UHGV-0156734_7	Pfam	PF01476	LysM domain	LysM
UHGV-0156734_7	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0156734_7	Structural annotation	PF21821, MF_02014, TIGR02126, NF010723, COG3499	NA	NA
UHGV-0156734_8	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0156734_8	UniRef90	UniRef90_A0A3A6K557	Phage tail tape measure protein	NA
UHGV-0156734_8	eggNOG-mapper	1095750.HMPREF9970_2277	Phage-related minor tail protein	NA
UHGV-0156734_8	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0156734_8	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0156734_8	COG	COG5283	Phage-related tail protein	NA
UHGV-0156734_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0156734_9	UniRef90	UniRef90_A0A396MP04	HK97 gp10 family phage protein	NA
UHGV-0156734_9	eggNOG-mapper	397288.C806_00070	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0156734_9	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0156734_10	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0156734_10	UniRef90	UniRef90_I0R7P0	Phage XkdN-like protein	NA
UHGV-0156734_10	eggNOG-mapper	1095750.HMPREF9970_2276	PFAM Phage XkdN-like protein	NA
UHGV-0156734_10	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0156734_10	Structural annotation	PF08890	NA	NA
UHGV-0156734_11	PHROG	phrog_365	tail protein	tail
UHGV-0156734_11	UniRef90	UniRef90_I0R7M5	PF09393 family protein	NA
UHGV-0156734_11	eggNOG-mapper	1095750.HMPREF9970_2275	Phage tail tube protein	NA
UHGV-0156734_11	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0156734_11	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0156734_12	PHROG	phrog_1480	tail sheath	tail
UHGV-0156734_12	UniRef90	UniRef90_A0A3R6I7F4	Phage tail protein	NA
UHGV-0156734_12	eggNOG-mapper	1095750.HMPREF9970_2274	Phage tail sheath C-terminal domain	NA
UHGV-0156734_12	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0156734_12	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0156734_12	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0156734_13	PHROG	phrog_525	NA	unknown function
UHGV-0156734_13	eggNOG-mapper	1408324.JNJK01000006_gene1386	NA	NA
UHGV-0156734_13	Pfam	PF20765	NA	DUF6838
UHGV-0156734_13	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-0156734_14	PHROG	phrog_25	head closure Hc1	connector
UHGV-0156734_14	UniRef90	UniRef90_A0A3A6KDE6	Head-tail adaptor protein	NA
UHGV-0156734_14	eggNOG-mapper	1095750.HMPREF9970_2271	Phage head-tail joining protein	NA
UHGV-0156734_14	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0156734_14	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0156734_14	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0156734_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0156734_15	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0156734_15	UniRef90	UniRef90_A0A3A6K1I0	Phage gp6-like head-tail connector protein	NA
UHGV-0156734_15	eggNOG-mapper	1095750.HMPREF9970_2270	Phage gp6-like head-tail connector protein	NA
UHGV-0156734_15	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0156734_15	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0156734_15	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0156734_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-0156734_16	UniRef90	UniRef90_A0A3A6K8H2	Phage major capsid protein	NA
UHGV-0156734_16	eggNOG-mapper	1095750.HMPREF9970_2269	phage major capsid protein, HK97 family	NA
UHGV-0156734_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0156734_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0156734_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0156734_16	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0156734_17	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0156734_17	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0156734_17	UniRef90	UniRef90_A0A3A6K544	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0156734_17	eggNOG-mapper	1095750.HMPREF9970_2268	Belongs to the peptidase S14 family	NA
UHGV-0156734_17	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0156734_17	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0156734_17	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0156734_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-0156734_18	UniRef90	UniRef90_A0A3A6K3C6	Phage portal protein	NA
UHGV-0156734_18	eggNOG-mapper	1095750.HMPREF9970_2267	Phage portal protein, HK97 family	NA
UHGV-0156734_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0156734_18	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0156734_18	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0156734_18	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0156734_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0156734_19	UniRef90	UniRef90_A0A3A6K1R0	Terminase large subunit	NA
UHGV-0156734_19	eggNOG-mapper	1095750.HMPREF9970_2266	Phage terminase-like protein large subunit	NA
UHGV-0156734_19	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0156734_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0156734_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0156734_19	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0156734_20	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0156734_20	UniRef90	UniRef90_A0A417ACA4	Phage terminase small subunit P27 family	NA
UHGV-0156734_20	eggNOG-mapper	1095750.HMPREF9970_2265	Phage terminase, small subunit	NA
UHGV-0156734_20	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0156734_20	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0156734_20	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0156734_20	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0156734_21	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0156734_21	UniRef90	UniRef90_A0A849D0W5	HNH endonuclease	NA
UHGV-0156734_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0156734_22	UniRef90	UniRef90_A0A3A6K7U9	Chemotaxis protein	NA
UHGV-0156734_22	eggNOG-mapper	1304866.K413DRAFT_0813	NA	NA
UHGV-0156734_22	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0156734_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0156734_24	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-0156734_24	eggNOG-mapper	1304866.K413DRAFT_3028	NA	NA
UHGV-0156734_24	Structural annotation	PF04545	NA	NA
UHGV-0156734_27	PHROG	phrog_16126	NA	unknown function
UHGV-0156734_28	PHROG	phrog_6568	NA	unknown function
UHGV-0156734_33	UniRef90	UniRef90_A0A3R6NW84	NA	NA
UHGV-0156734_33	eggNOG-mapper	1235799.C818_04211	NA	NA
UHGV-0156734_33	Pfam	PF04448	NA	DUF551
UHGV-0156734_33	Structural annotation	NF041588	NA	NA
UHGV-0156734_36	Structural annotation	PF04936	NA	NA
UHGV-0156734_37	PHROG	phrog_15077	NA	unknown function
UHGV-0156734_37	UniRef90	UniRef90_A0A1M6RQ18	RNA polymerase, alpha chain C terminal domain	NA
UHGV-0156734_37	eggNOG-mapper	742740.HMPREF9474_03494	NA	NA
UHGV-0156734_37	Structural annotation	NF038070	NA	NA
UHGV-0156734_38	PHROG	phrog_1029	NA	unknown function
UHGV-0156734_38	UniRef90	UniRef90_E7GRE5	NA	NA
UHGV-0156734_38	eggNOG-mapper	742740.HMPREF9474_03490	NA	NA
UHGV-0156734_39	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0156734_39	UniRef90	UniRef90_A0A417AC21	Replication terminator protein	NA
UHGV-0156734_39	eggNOG-mapper	411483.FAEPRAA2165_01886	NA	NA
UHGV-0156734_40	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0156734_40	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0156734_40	UniRef90	UniRef90_A0A3A6KA78	Single-stranded DNA-binding protein	NA
UHGV-0156734_40	eggNOG-mapper	1304866.K413DRAFT_1332	Single-stranded DNA-binding protein	NA
UHGV-0156734_40	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0156734_40	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0156734_40	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0156734_40	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0156734_40	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0156734_41	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0156734_41	UniRef90	UniRef90_A0A3A6KR40	DNA primase	NA
UHGV-0156734_41	eggNOG-mapper	478749.BRYFOR_09102	Phage plasmid primase, P4 family	NA
UHGV-0156734_41	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0156734_41	Pfam	PF19263	NA	DUF5906
UHGV-0156734_41	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0156734_41	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0156734_41	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0156734_41	Structural annotation	PF02257, PF05272, PF08706, MF_01407, NF011296, COG3378	NA	NA
UHGV-0156734_42	PHROG	phrog_398	NA	unknown function
UHGV-0156734_42	UniRef90	UniRef90_UPI001C01AC37	putative HNHc nuclease	NA
UHGV-0156734_42	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0156734_42	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0156734_42	Structural annotation	PF16784	NA	NA
UHGV-0156734_50	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0156734_50	UniRef90	UniRef90_UPI00156EDECA	NA	NA
UHGV-0156734_50	eggNOG-mapper	588581.Cpap_0887	NA	NA
UHGV-0156734_50	Structural annotation	PF06573	NA	NA
UHGV-0156734_52	UniRef90	UniRef90_UPI001D13D714	helix-turn-helix domain-containing protein	NA
UHGV-0156734_52	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-0156734_52	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0156734_53	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0156734_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0156734_53	UniRef90	UniRef90_A0A416JYN0	XRE family transcriptional regulator	NA
UHGV-0156734_53	eggNOG-mapper	556261.HMPREF0240_01268	Helix-turn-helix	NA
UHGV-0156734_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0156734_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0156734_53	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0156734_54	PHROG	phrog_87	metallo-protease	other
UHGV-0156734_54	UniRef90	UniRef90_UPI0011863754	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0156734_54	eggNOG-mapper	1292035.H476_1038	NA	NA
UHGV-0156734_54	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0156734_54	Structural annotation	PF06114, COG2856	NA	NA