UHGV-0156739

Genome information

Genome length 36,390 bps

CDS count 44

Completeness 100.00% (complete)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-0156739
vOTU ID	vOTU-046232
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_478470
BioSample	SAMN06115478
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.96
Jumbo phage	No

Genome content
Genome length	36,390 bps
GC content	63.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	94.15%
Average CDS length	781.02 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0156739_1	PHROG	phrog_14770	NA	unknown function
UHGV-0156739_1	eggNOG-mapper	445971.ANASTE_00728	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair	NA
UHGV-0156739_1	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0156739_1	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0156739_1	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0156739_1	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0156739_1	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0156739_3	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0156739_3	PHROG	phrog_95	integrase	integration and excision
UHGV-0156739_3	UniRef90	UniRef90_G4KP73	Putative site-specific recombinase	NA
UHGV-0156739_3	eggNOG-mapper	693746.OBV_21880	Resolvase, N terminal domain	NA
UHGV-0156739_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0156739_3	Pfam	PF07508	Recombinase	Recombinase
UHGV-0156739_3	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0156739_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0156739_3	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0156739_5	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0156739_5	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0156739_5	UniRef90	UniRef90_A0A831L2R3	Transcriptional regulator	NA
UHGV-0156739_5	eggNOG-mapper	585529.HMPREF0291_10522	Helix-turn-helix XRE-family like proteins	NA
UHGV-0156739_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0156739_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0156739_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0156739_6	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0156739_6	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0156739_6	UniRef90	UniRef90_A0A174LY22	Antitoxin PezA	NA
UHGV-0156739_6	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0156739_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0156739_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0156739_6	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0156739_8	eggNOG-mapper	693746.OBV_21850	NA	NA
UHGV-0156739_9	Structural annotation	PF15591, MF_01549, NF007981	NA	NA
UHGV-0156739_13	PHROG	phrog_38338	NA	unknown function
UHGV-0156739_13	UniRef90	UniRef90_UPI00189B3582	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0156739_13	eggNOG-mapper	693746.OBV_24020	NA	NA
UHGV-0156739_14	PHROG	phrog_8470	NA	unknown function
UHGV-0156739_14	UniRef90	UniRef90_UPI00195E492B	PcfJ domain-containing protein	NA
UHGV-0156739_14	eggNOG-mapper	1378168.N510_01842	PcfJ-like protein	NA
UHGV-0156739_14	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0156739_14	Structural annotation	PF14284	NA	NA
UHGV-0156739_15	PHROG	phrog_15609	NA	unknown function
UHGV-0156739_15	UniRef90	UniRef90_UPI00189CED29	NA	NA
UHGV-0156739_15	eggNOG-mapper	693746.OBV_25390	NA	NA
UHGV-0156739_15	Pfam	PF11300	NA	DUF3102
UHGV-0156739_15	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-0156739_15	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0156739_16	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0156739_16	UniRef90	UniRef90_R6TQ60	Putative terminase large subunit	NA
UHGV-0156739_16	eggNOG-mapper	693746.OBV_23980	phage Terminase large subunit	NA
UHGV-0156739_16	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0156739_16	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0156739_19	PHROG	phrog_3136	NA	unknown function
UHGV-0156739_19	UniRef90	UniRef90_UPI001C00EDA4	ASCH domain-containing protein	NA
UHGV-0156739_19	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0156739_19	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0156739_20	UniRef90	UniRef90_A0A8D9PDK1	Anti-repressor	NA
UHGV-0156739_22	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0156739_22	UniRef90	UniRef90_A0A385Q0Q2	NA	NA
UHGV-0156739_22	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0156739_22	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0156739_23	Structural annotation	PF09228	NA	NA
UHGV-0156739_24	Structural annotation	NF040595	NA	NA
UHGV-0156739_25	PHROG	phrog_25567	NA	unknown function
UHGV-0156739_25	UniRef90	UniRef90_UPI00164AED9E	helix-turn-helix domain-containing protein	NA
UHGV-0156739_25	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0156739_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0156739_25	Structural annotation	NF040522, COG2944	NA	NA
UHGV-0156739_26	UniRef90	UniRef90_R6DRH1	Putative TnpX site-specific recombinase	NA
UHGV-0156739_26	eggNOG-mapper	742740.HMPREF9474_00056	NA	NA
UHGV-0156739_26	Structural annotation	TIGR03826	NA	NA
UHGV-0156739_28	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0156739_28	eggNOG-mapper	1226322.HMPREF1545_03841	NA	NA
UHGV-0156739_28	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0156739_29	eggNOG-mapper	1226322.HMPREF1545_00288	NA	NA
UHGV-0156739_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0156739_30	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0156739_30	UniRef90	UniRef90_G4KPV4	Terminase small subunit family protein	NA
UHGV-0156739_30	eggNOG-mapper	693746.OBV_23940	DNA packaging	NA
UHGV-0156739_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0156739_30	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0156739_30	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0156739_31	PHROG	phrog_156	portal protein	head and packaging
UHGV-0156739_31	eggNOG-mapper	693746.OBV_23930	NA	NA
UHGV-0156739_31	Structural annotation	PF12236, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0156739_32	Structural annotation	NF007241	NA	NA
UHGV-0156739_34	PHROG	phrog_35275	NA	unknown function
UHGV-0156739_34	eggNOG-mapper	693746.OBV_23910	NA	NA
UHGV-0156739_35	PHROG	phrog_24113	NA	unknown function
UHGV-0156739_35	eggNOG-mapper	1226322.HMPREF1545_03847	NA	NA
UHGV-0156739_35	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0156739_36	PHROG	phrog_371	major head protein	head and packaging
UHGV-0156739_36	UniRef90	UniRef90_R6TFU9	Mu-like_gpT domain-containing protein	NA
UHGV-0156739_36	eggNOG-mapper	693746.OBV_23890	NA	NA
UHGV-0156739_36	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0156739_36	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0156739_37	PHROG	phrog_13046	NA	unknown function
UHGV-0156739_37	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-0156739_37	Structural annotation	PF20387	NA	NA
UHGV-0156739_38	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0156739_38	eggNOG-mapper	693746.OBV_23870	NA	NA
UHGV-0156739_38	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0156739_39	UniRef90	UniRef90_A0A417BX67	Chitin-binding type-3 domain-containing protein	NA
UHGV-0156739_39	eggNOG-mapper	1408437.JNJN01000002_gene1389	NA	NA
UHGV-0156739_40	PHROG	phrog_1863	NA	unknown function
UHGV-0156739_40	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0156739_41	PHROG	phrog_881	holin	lysis
UHGV-0156739_41	UniRef90	UniRef90_A0A8D9PDR9	Holin	NA
UHGV-0156739_41	eggNOG-mapper	476272.RUMHYD_01966	Putative phage holin Dp-1	NA
UHGV-0156739_41	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0156739_41	Structural annotation	PF16938, COG3237	NA	NA
UHGV-0156739_42	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0156739_42	PHROG	phrog_1493	endolysin	lysis
UHGV-0156739_42	UniRef90	UniRef90_A0A350TLR9	Peptidoglycan-binding domain-containing protein	NA
UHGV-0156739_42	eggNOG-mapper	1504823.CCMM01000008_gene1019	Ami_2	NA
UHGV-0156739_42	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0156739_42	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0156739_42	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0156739_42	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG3023	NA	NA