UHGV-0156746

Genome information

Genome length 25,390 bps

CDS count 36

Completeness 61.17% (medium-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0156746
vOTU ID	vOTU-027765
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_445212
BioSample	SAMN05971549
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.17% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.23
Jumbo phage	No

Genome content
Genome length	25,390 bps
GC content	45.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	95.77%
Average CDS length	680.75 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0156746_1	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0156746_1	UniRef90	UniRef90_A0A349YR63	Phage-tail_3 domain-containing protein (Fragment)	NA
UHGV-0156746_1	eggNOG-mapper	1128111.HMPREF0870_01756	gp58-like protein	NA
UHGV-0156746_1	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0156746_1	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0156746_1	COG	COG1511	NA	NA
UHGV-0156746_1	Structural annotation	PF13550, PF00041, PF16323, NF040662, COG4733	NA	NA
UHGV-0156746_2	UniRef90	UniRef90_A0A380N793	NlpC/P60 family	NA
UHGV-0156746_2	eggNOG-mapper	1128111.HMPREF0870_01757	cysteine-type peptidase activity	NA
UHGV-0156746_2	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0156746_2	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0156746_2	Structural annotation	PF00877, NF008096, COG3234	NA	NA
UHGV-0156746_3	PHROG	phrog_18	minor tail protein	tail
UHGV-0156746_3	UniRef90	UniRef90_A0A380N670	Phage minor tail protein L	NA
UHGV-0156746_3	eggNOG-mapper	1128111.HMPREF0870_01758	Phage minor tail protein L	NA
UHGV-0156746_3	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0156746_3	COG	COG4672	Phage tail protein	NA
UHGV-0156746_3	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0156746_4	eggNOG-mapper	1009370.ALO_04658	NA	NA
UHGV-0156746_4	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0156746_5	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0156746_5	UniRef90	UniRef90_UPI000422D822	tape measure protein	NA
UHGV-0156746_5	eggNOG-mapper	1123489.AUAN01000010_gene351	tape measure	NA
UHGV-0156746_5	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0156746_5	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0156746_5	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0156746_5	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0156746_6	eggNOG-mapper	1123489.AUAN01000010_gene353	NA	NA
UHGV-0156746_7	PHROG	phrog_290	minor tail protein	tail
UHGV-0156746_7	UniRef90	UniRef90_UPI00195F5747	phage tail tube protein	NA
UHGV-0156746_7	eggNOG-mapper	1123489.AUAN01000010_gene354	NA	NA
UHGV-0156746_7	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-0156746_7	Structural annotation	PF18906, TIGR02241, TIGR02126, COG5437, COG3498	NA	NA
UHGV-0156746_8	PHROG	phrog_18864	NA	unknown function
UHGV-0156746_8	eggNOG-mapper	706434.HMPREF9429_00521	NA	NA
UHGV-0156746_8	Structural annotation	PF06141, COG5003	NA	NA
UHGV-0156746_9	PHROG	phrog_19017	NA	unknown function
UHGV-0156746_9	eggNOG-mapper	888060.HMPREF9081_1547	NA	NA
UHGV-0156746_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0156746_10	UniRef90	UniRef90_U7UGG7	Tail protein, HK97 family	NA
UHGV-0156746_10	eggNOG-mapper	706434.HMPREF9429_00523	Phage virion morphogenesis	NA
UHGV-0156746_10	COG	COG5005	NA	NA
UHGV-0156746_10	Structural annotation	TIGR01725	NA	NA
UHGV-0156746_11	PHROG	phrog_15682	NA	unknown function
UHGV-0156746_11	eggNOG-mapper	1408823.AXUS01000024_gene2717	NA	NA
UHGV-0156746_12	PHROG	phrog_212	major head protein	head and packaging
UHGV-0156746_12	UniRef90	UniRef90_UPI00110CD6BE	phage capsid protein	NA
UHGV-0156746_12	eggNOG-mapper	1122918.KB907248_gene4499	NA	NA
UHGV-0156746_12	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0156746_13	UniRef90	UniRef90_A0A6N3AJF1	Chromosome partition protein Smc	NA
UHGV-0156746_13	eggNOG-mapper	888060.HMPREF9081_1551	NA	NA
UHGV-0156746_13	Structural annotation	PF06810	NA	NA
UHGV-0156746_14	Structural annotation	PF15597	NA	NA
UHGV-0156746_15	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0156746_15	UniRef90	UniRef90_R5BIR3	Ntox50 domain-containing protein	NA
UHGV-0156746_15	eggNOG-mapper	1123489.AUAN01000010_gene362	NA	NA
UHGV-0156746_15	Pfam	PF14021	Tuberculosis necrotizing toxin	TNT
UHGV-0156746_16	PHROG	phrog_145	portal protein	head and packaging
UHGV-0156746_16	UniRef90	UniRef90_F9MMJ7	Conserved domain protein	NA
UHGV-0156746_16	eggNOG-mapper	706434.HMPREF9429_00529	NA	NA
UHGV-0156746_16	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0156746_17	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0156746_17	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0156746_17	UniRef90	UniRef90_A0A380NJL4	Phage terminase, large subunit, PBSX family	NA
UHGV-0156746_17	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-0156746_17	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0156746_17	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0156746_17	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0156746_17	COG	COG1783	Phage terminase large subunit	NA
UHGV-0156746_17	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0156746_18	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0156746_18	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0156746_18	UniRef90	UniRef90_A0A1G5VI43	Phage terminase small subunit	NA
UHGV-0156746_18	eggNOG-mapper	526218.Sterm_1425	terminase small subunit	NA
UHGV-0156746_18	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0156746_18	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0156746_18	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0156746_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0156746_19	eggNOG-mapper	679201.HMPREF9334_00314	NA	NA
UHGV-0156746_19	Pfam	PF07374	NA	DUF1492
UHGV-0156746_19	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0156746_22	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0156746_22	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0156746_22	UniRef90	UniRef90_UPI001D082351	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0156746_22	eggNOG-mapper	857293.CAAU_0790	Endodeoxyribonuclease RusA	NA
UHGV-0156746_22	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0156746_22	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0156746_22	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0156746_25	KOfam	K03530	hupB; DNA-binding protein HU-beta	NA
UHGV-0156746_25	PHROG	phrog_379	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0156746_25	UniRef90	UniRef90_A0A1G5VHZ6	DNA-binding protein HU-beta	NA
UHGV-0156746_25	eggNOG-mapper	1410626.JHXB01000003_gene1084	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions	NA
UHGV-0156746_25	Pfam	PF00216	Bacterial DNA-binding protein	Bac_DNA_binding
UHGV-0156746_25	COG	COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	NA
UHGV-0156746_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0156746_27	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0156746_27	UniRef90	UniRef90_R7PT35	Single-stranded DNA-binding protein	NA
UHGV-0156746_27	eggNOG-mapper	888062.HMPREF9083_1032	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0156746_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0156746_27	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0156746_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0156746_27	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0156746_27	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0156746_28	PHROG	phrog_2182	NA	unknown function
UHGV-0156746_29	PHROG	phrog_9804	NA	unknown function
UHGV-0156746_29	UniRef90	UniRef90_A0A7V6MW08	Inhibitor_G39P domain-containing protein	NA
UHGV-0156746_29	eggNOG-mapper	1273103.NM10_01154	NA	NA
UHGV-0156746_29	Structural annotation	PF11417	NA	NA
UHGV-0156746_30	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0156746_30	UniRef90	UniRef90_A0A1W1IDN6	Phg_2220_C domain-containing protein	NA
UHGV-0156746_30	eggNOG-mapper	1415774.U728_770	DnaD domain protein	NA
UHGV-0156746_30	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0156746_30	Structural annotation	PF09681, MF_01177, TIGR01714, COG1846	NA	NA
UHGV-0156746_32	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0156746_32	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0156746_32	UniRef90	UniRef90_E4L8C5	Recombinase, phage RecT family	NA
UHGV-0156746_32	eggNOG-mapper	910314.HMPREF9220_1108	Recombinase, phage RecT family	NA
UHGV-0156746_32	Pfam	PF03837	RecT family	RecT
UHGV-0156746_32	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0156746_32	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0156746_32	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0156746_33	PHROG	phrog_9842	NA	unknown function
UHGV-0156746_33	UniRef90	UniRef90_UPI0018C7739B	NA	NA
UHGV-0156746_33	eggNOG-mapper	1410653.JHVC01000024_gene1129	NA	NA
UHGV-0156746_33	Pfam	PF10386	NA	DUF2441
UHGV-0156746_33	Structural annotation	PF10386, NF033144	NA	NA
UHGV-0156746_36	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0156746_36	UniRef90	UniRef90_A0A134CHS9	YqaJ viral recombinase family protein	NA
UHGV-0156746_36	eggNOG-mapper	1273103.NM10_01174	YqaJ viral recombinase family protein	NA
UHGV-0156746_36	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0156746_36	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0156746_36	Structural annotation	PF12684, MF_03030, COG5377	NA	NA