UHGV-0156761

Genome information

Genome length 33,017 bps

CDS count 57

Completeness 74.81% (medium-quality)

geNomad score 0.9688

Prediction confidence Confident

Genome information
Genome ID	UHGV-0156761
vOTU ID	vOTU-018132
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_445205
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.81% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9688
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.41
Jumbo phage	No

Genome content
Genome length	33,017 bps
GC content	51.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	90.66%
Average CDS length	529.37 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0156761_1	PHROG	phrog_32744	NA	unknown function
UHGV-0156761_1	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0156761_1	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0156761_2	PHROG	phrog_1194	NA	unknown function
UHGV-0156761_2	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0156761_2	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0156761_3	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0156761_3	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0156761_3	COG	COG1511	NA	NA
UHGV-0156761_3	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0156761_4	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-0156761_4	UniRef90	UniRef90_UPI001D05CE4F	OB-fold putative lipoprotein	NA
UHGV-0156761_4	eggNOG-mapper	1203606.HMPREF1526_01637	tRNA_anti-like	NA
UHGV-0156761_4	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0156761_5	PHROG	phrog_706	NA	unknown function
UHGV-0156761_5	UniRef90	UniRef90_UPI001D069FB9	Gp15 family bacteriophage protein	NA
UHGV-0156761_5	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0156761_5	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0156761_5	Structural annotation	PF06854	NA	NA
UHGV-0156761_6	PHROG	phrog_11299	NA	unknown function
UHGV-0156761_6	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0156761_6	Structural annotation	PF10666	NA	NA
UHGV-0156761_7	PHROG	phrog_3099	NA	unknown function
UHGV-0156761_7	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-0156761_7	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0156761_8	PHROG	phrog_3266	tail completion	connector
UHGV-0156761_8	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-0156761_8	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0156761_8	Structural annotation	PF12691	NA	NA
UHGV-0156761_9	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0156761_9	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0156761_9	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0156761_9	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0156761_9	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0156761_10	PHROG	phrog_3366	NA	unknown function
UHGV-0156761_10	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0156761_10	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0156761_11	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0156761_11	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0156761_12	eggNOG-mapper	1226322.HMPREF1545_00051	NA	NA
UHGV-0156761_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-0156761_13	UniRef90	UniRef90_U2SBS0	Phage capsid family protein	NA
UHGV-0156761_13	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0156761_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0156761_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0156761_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0156761_13	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0156761_14	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0156761_14	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0156761_16	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0156761_16	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0156761_16	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0156761_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0156761_16	COG	COG2369	NA	NA
UHGV-0156761_16	Structural annotation	PF06152, PF15542, TIGR01641, COG2369	NA	NA
UHGV-0156761_17	PHROG	phrog_533	portal protein	head and packaging
UHGV-0156761_17	UniRef90	UniRef90_UPI001D078D46	phage portal protein	NA
UHGV-0156761_17	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0156761_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0156761_17	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0156761_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0156761_19	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0156761_19	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0156761_19	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0156761_19	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0156761_19	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0156761_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0156761_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0156761_19	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0156761_20	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0156761_20	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0156761_20	UniRef90	UniRef90_UPI001D05F697	terminase small subunit	NA
UHGV-0156761_20	eggNOG-mapper	1316932.MHH_c17910	Terminase small subunit	NA
UHGV-0156761_20	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0156761_20	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0156761_20	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0156761_21	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0156761_21	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0156761_21	UniRef90	UniRef90_A0A7I8D1Y4	Putative P1-type antirepressor - phage associated	NA
UHGV-0156761_21	eggNOG-mapper	1232443.BAIA02000079_gene53	AntA/AntB antirepressor	NA
UHGV-0156761_21	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0156761_21	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0156761_21	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0156761_21	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0156761_23	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0156761_23	PHROG	phrog_4836	CII-like regulator	transcription regulation
UHGV-0156761_23	UniRef90	UniRef90_U2R0P8	DNA-binding helix-turn-helix protein	NA
UHGV-0156761_23	eggNOG-mapper	1226322.HMPREF1545_02890	Helix-turn-helix XRE-family like proteins	NA
UHGV-0156761_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0156761_23	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0156761_25	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0156761_25	UniRef90	UniRef90_A0A1C7FQT4	Transcriptional regulator	NA
UHGV-0156761_25	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0156761_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0156761_25	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0156761_25	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0156761_26	PHROG	phrog_924	NA	unknown function
UHGV-0156761_26	UniRef90	UniRef90_UPI0019214AF7	NA	NA
UHGV-0156761_26	eggNOG-mapper	155864.EDL933_3275	NA	NA
UHGV-0156761_26	Pfam	PF04448	NA	DUF551
UHGV-0156761_26	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0156761_26	Structural annotation	NF041588	NA	NA
UHGV-0156761_27	PHROG	phrog_8684	NA	unknown function
UHGV-0156761_27	UniRef90	UniRef90_UPI00195CB2B3	YopX family protein	NA
UHGV-0156761_27	eggNOG-mapper	1226322.HMPREF1545_00036	YopX protein	NA
UHGV-0156761_27	Pfam	PF09643	YopX protein	YopX
UHGV-0156761_27	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0156761_32	PHROG	phrog_38832	NA	unknown function
UHGV-0156761_32	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0156761_33	Structural annotation	NF000937	NA	NA
UHGV-0156761_34	Structural annotation	NF011227	NA	NA
UHGV-0156761_36	eggNOG-mapper	742738.HMPREF9460_04055	NA	NA
UHGV-0156761_37	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0156761_37	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0156761_37	UniRef90	UniRef90_A0A174E7S0	Methyltransferase	NA
UHGV-0156761_37	eggNOG-mapper	479437.Elen_2608	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0156761_37	PADLOC	MTase_II_00107	Type II methyltransferase	RM
UHGV-0156761_37	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0156761_37	COG	COG0863	DNA modification methylase	NA
UHGV-0156761_37	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0156761_38	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0156761_38	UniRef90	UniRef90_A0A6A8VJ62	NA	NA
UHGV-0156761_38	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0156761_38	Pfam	PF06356	NA	DUF1064
UHGV-0156761_38	Structural annotation	PF06356	NA	NA
UHGV-0156761_40	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0156761_40	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0156761_40	UniRef90	UniRef90_UPI0018973262	AAA family ATPase	NA
UHGV-0156761_40	eggNOG-mapper	742738.HMPREF9460_00852	Participates in initiation and elongation during chromosome replication	NA
UHGV-0156761_40	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0156761_40	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0156761_40	COG	COG0305	Replicative DNA helicase	NA
UHGV-0156761_40	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0156761_41	PHROG	phrog_15768	NA	unknown function
UHGV-0156761_41	UniRef90	UniRef90_UPI00189C2664	NA	NA
UHGV-0156761_41	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0156761_41	Pfam	PF19808	NA	DUF6291
UHGV-0156761_41	Structural annotation	PF19808	NA	NA
UHGV-0156761_42	PHROG	phrog_862	NA	unknown function
UHGV-0156761_42	eggNOG-mapper	279238.Saro_3022	NA	NA
UHGV-0156761_42	Structural annotation	PF05037, COG2965	NA	NA
UHGV-0156761_44	Structural annotation	PF09943	NA	NA
UHGV-0156761_45	KOfam	K15352	pipB2; secreted effector protein PipB2	NA
UHGV-0156761_45	PHROG	phrog_9562	NA	unknown function
UHGV-0156761_45	UniRef90	UniRef90_A0A6N3FDD3	Pentapeptide repeats (8 copies)	NA
UHGV-0156761_45	eggNOG-mapper	1232443.BAIA02000078_gene49	Pentapeptide repeat protein	NA
UHGV-0156761_45	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0156761_45	Pfam	PF19062	NA	DUF5758
UHGV-0156761_45	COG	COG1357	NA	NA
UHGV-0156761_45	Structural annotation	PF19062	NA	NA
UHGV-0156761_48	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-0156761_50	Structural annotation	PF03885	NA	NA
UHGV-0156761_52	KOfam	K19449	sinR; XRE family transcriptional regulator, master regulator for biofilm formation	NA
UHGV-0156761_52	UniRef90	UniRef90_UPI0018A95A85	helix-turn-helix domain-containing protein	NA
UHGV-0156761_52	eggNOG-mapper	718252.FP2_16270	sequence-specific DNA binding	NA
UHGV-0156761_52	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0156761_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0156761_52	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0156761_52	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0156761_53	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0156761_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0156761_53	UniRef90	UniRef90_UPI0018AAC13F	helix-turn-helix transcriptional regulator	NA
UHGV-0156761_53	eggNOG-mapper	997296.PB1_16489	Helix-turn-helix XRE-family like proteins	NA
UHGV-0156761_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0156761_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0156761_53	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0156761_54	PHROG	phrog_87	metallo-protease	other
UHGV-0156761_54	UniRef90	UniRef90_A0A174DB16	Metallopeptidase immA	NA
UHGV-0156761_54	eggNOG-mapper	717606.PaecuDRAFT_3093	IrrE N-terminal-like domain	NA
UHGV-0156761_54	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0156761_54	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0156761_54	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0156761_56	eggNOG-mapper	203119.Cthe_2752	Metallo-beta-lactamase domain protein	NA
UHGV-0156761_56	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA