UHGV-0156854

Genome information

Genome length 19,414 bps

CDS count 30

Completeness 84.15% (medium-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-0156854
vOTU ID	vOTU-022126
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_496909
BioSample	NA
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.15% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.37
Jumbo phage	No

Genome content
Genome length	19,414 bps
GC content	41.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	92.85%
Average CDS length	601.80 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0156854_2	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-0156854_2	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-0156854_2	Structural annotation	PF13022	NA	NA
UHGV-0156854_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0156854_3	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0156854_3	UniRef90	UniRef90_UPI0018AA0488	PBSX family phage terminase large subunit	NA
UHGV-0156854_3	eggNOG-mapper	702450.CUW_0531	Phage terminase, large subunit, PBSX family	NA
UHGV-0156854_3	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0156854_3	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0156854_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0156854_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-0156854_3	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0156854_4	Structural annotation	PF21226, TIGR04183, COG2372	NA	NA
UHGV-0156854_5	UniRef90	UniRef90_R6HYD9	Collagen triple helix repeat protein	NA
UHGV-0156854_8	PHROG	phrog_27545	NA	unknown function
UHGV-0156854_8	UniRef90	UniRef90_R6ELD6	Glycosyl hydrolase family 18 family protein	NA
UHGV-0156854_8	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-0156854_8	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0156854_9	PHROG	phrog_64	portal protein	head and packaging
UHGV-0156854_9	UniRef90	UniRef90_A0A843HXP9	Phage portal protein	NA
UHGV-0156854_9	eggNOG-mapper	1280689.AUJC01000007_gene3320	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0156854_9	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0156854_9	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0156854_9	Structural annotation	PF05133, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0156854_10	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0156854_10	UniRef90	UniRef90_A0A1H0M7B4	Phage putative head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0156854_10	eggNOG-mapper	997350.HMPREF9129_1656	Phage Mu protein F like protein	NA
UHGV-0156854_10	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0156854_10	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0156854_10	COG	COG2369	NA	NA
UHGV-0156854_10	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0156854_11	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0156854_11	UniRef90	UniRef90_UPI00085C378A	NA	NA
UHGV-0156854_11	eggNOG-mapper	1111134.HMPREF1253_1185	NA	NA
UHGV-0156854_11	Pfam	PF14265	NA	DUF4355
UHGV-0156854_11	Structural annotation	PF14265	NA	NA
UHGV-0156854_12	PHROG	phrog_544	major head protein	head and packaging
UHGV-0156854_12	UniRef90	UniRef90_A0A6N3FT63	Phage capsid family protein	NA
UHGV-0156854_12	eggNOG-mapper	642492.Clole_0972	NA	NA
UHGV-0156854_12	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0156854_13	UniRef90	UniRef90_UPI000D717081	phage head-tail connector protein	NA
UHGV-0156854_13	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0156854_14	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0156854_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0156854_15	UniRef90	UniRef90_A0A136Q8F4	Phage protein, HK97 gp10 family	NA
UHGV-0156854_15	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0156854_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0156854_15	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0156854_15	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0156854_16	PHROG	phrog_78	tail terminator	connector
UHGV-0156854_16	Structural annotation	PF09646, COG3167	NA	NA
UHGV-0156854_17	PHROG	phrog_158	major tail protein	tail
UHGV-0156854_17	UniRef90	UniRef90_UPI0005906553	tail protein	NA
UHGV-0156854_17	eggNOG-mapper	1499683.CCFF01000017_gene2926	Phage tail tube protein, TTP	NA
UHGV-0156854_17	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0156854_17	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0156854_18	UniRef90	UniRef90_UPI0005CCB78A	NA	NA
UHGV-0156854_18	eggNOG-mapper	1499683.CCFF01000017_gene2925	NA	NA
UHGV-0156854_18	Pfam	PF19591	NA	DUF6096
UHGV-0156854_18	Structural annotation	PF19591, TIGR01674	NA	NA
UHGV-0156854_19	PHROG	phrog_2066	NA	unknown function
UHGV-0156854_19	eggNOG-mapper	702450.CUW_0542	NA	NA
UHGV-0156854_20	PHROG	phrog_23464	NA	unknown function
UHGV-0156854_20	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0156854_20	COG	COG5283	Phage-related tail protein	NA
UHGV-0156854_20	Structural annotation	MF_04138	NA	NA
UHGV-0156854_21	PHROG	phrog_1194	NA	unknown function
UHGV-0156854_21	Pfam	PF20458	NA	DUF6711
UHGV-0156854_21	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0156854_22	COG	COG4926	Phage-related protein	NA
UHGV-0156854_22	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0156854_23	PHROG	phrog_372	tail protein	tail
UHGV-0156854_23	UniRef90	UniRef90_UPI001E5C78A4	NA	NA
UHGV-0156854_23	eggNOG-mapper	1211844.CBLM010000023_gene977	NA	NA
UHGV-0156854_23	Structural annotation	PF05895, MF_04116, MF_00791, NF041431, COG1361	NA	NA
UHGV-0156854_24	PHROG	phrog_9829	NA	unknown function
UHGV-0156854_27	Structural annotation	PF04492, MF_00015, TIGR01610, COG0640	NA	NA