UHGV-0156870

Genome information

Genome length 32,450 bps

CDS count 44

Completeness 85.06% (medium-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0156870
vOTU ID	vOTU-027771
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_490984
BioSample	NA
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.06% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	33
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	67.79
Jumbo phage	No

Genome content
Genome length	32,450 bps
GC content	42.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	89.85%
Average CDS length	665.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0156870_2	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0156870_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0156870_2	UniRef90	UniRef90_A0A2A5QFT6	Transcriptional regulator	NA
UHGV-0156870_2	eggNOG-mapper	64186.O21993_9CAUD	sequence-specific DNA binding	NA
UHGV-0156870_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0156870_2	Structural annotation	PF01381, MF_00535, TIGR02607, COG3655	NA	NA
UHGV-0156870_3	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0156870_3	UniRef90	UniRef90_A0A2A5QFT9	Transcriptional regulator	NA
UHGV-0156870_3	eggNOG-mapper	64186.O21995_9CAUD	sequence-specific DNA binding	NA
UHGV-0156870_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0156870_3	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0156870_4	Structural annotation	PF12205	NA	NA
UHGV-0156870_6	UniRef90	UniRef90_UPI0012BC163C	Ig-like domain-containing protein	NA
UHGV-0156870_6	eggNOG-mapper	435842.HMPREF0848_00198	Pilin isopeptide linkage domain protein	NA
UHGV-0156870_6	Pfam	PF17961	Bacterial Ig domain	Big_8
UHGV-0156870_6	Pfam	PF05737	Collagen binding domain	Collagen_bind
UHGV-0156870_6	COG	COG4932	Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold	NA
UHGV-0156870_6	Structural annotation	PF05737, PF17961, NF000535	NA	NA
UHGV-0156870_7	Pfam	PF00746	LPXTG cell wall anchor motif	Gram_pos_anchor
UHGV-0156870_7	NCBIFam	TIGR01167.1	LPXTG cell wall anchor domain-containing protein	NA
UHGV-0156870_8	PHROG	phrog_2553	NA	unknown function
UHGV-0156870_8	UniRef90	UniRef90_UPI00118251C3	2-hydroxyacyl-CoA dehydratase	NA
UHGV-0156870_9	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0156870_9	UniRef90	UniRef90_UPI0009B7346C	phage recombination protein Bet	NA
UHGV-0156870_9	eggNOG-mapper	372457.A7DYD3_9CAUD	DNA metabolic process	NA
UHGV-0156870_9	Pfam	PF03837	RecT family	RecT
UHGV-0156870_9	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0156870_9	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0156870_10	PHROG	phrog_674	NA	unknown function
UHGV-0156870_10	UniRef90	UniRef90_UPI001582FF97	NA	NA
UHGV-0156870_10	eggNOG-mapper	1239381.K4JU67_9CAUD	NA	NA
UHGV-0156870_10	Pfam	PF07083	NA	DUF1351
UHGV-0156870_10	Structural annotation	PF07083	NA	NA
UHGV-0156870_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0156870_11	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0156870_11	UniRef90	UniRef90_UPI00117145D5	single-stranded DNA-binding protein	NA
UHGV-0156870_11	eggNOG-mapper	264199.stu1753	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0156870_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0156870_11	NCBIFam	NF005580.0	single-stranded DNA-binding protein	NA
UHGV-0156870_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0156870_11	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0156870_11	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0156870_12	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0156870_12	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0156870_12	UniRef90	UniRef90_A0A3G8F7D4	Holliday junction resolvase	NA
UHGV-0156870_12	eggNOG-mapper	112023.Q9MCM0_9CAUD	magnesium ion binding	NA
UHGV-0156870_12	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0156870_12	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0156870_13	PHROG	phrog_1982	NA	unknown function
UHGV-0156870_13	Structural annotation	PF01381, NF040507, COG2944	NA	NA
UHGV-0156870_14	Structural annotation	PF10750, MF_01054, NF001220, COG5515	NA	NA
UHGV-0156870_15	PHROG	phrog_1489	NA	unknown function
UHGV-0156870_15	UniRef90	UniRef90_Q9MCL8	ORF12	NA
UHGV-0156870_15	Structural annotation	PF13773	NA	NA
UHGV-0156870_17	PHROG	phrog_5513	NA	unknown function
UHGV-0156870_18	PHROG	phrog_121	NA	unknown function
UHGV-0156870_18	UniRef90	UniRef90_UPI0015D26941	NA	NA
UHGV-0156870_18	eggNOG-mapper	365659.smi_0429	NA	NA
UHGV-0156870_18	Pfam	PF07852	NA	DUF1642
UHGV-0156870_18	Structural annotation	PF07852	NA	NA
UHGV-0156870_19	PHROG	phrog_7136	NA	unknown function
UHGV-0156870_20	PHROG	phrog_1994	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0156870_20	UniRef90	UniRef90_A0A1F1HC29	HTH cro/C1-type domain-containing protein	NA
UHGV-0156870_20	eggNOG-mapper	306323.Q56S64_9CAUD	sequence-specific DNA binding	NA
UHGV-0156870_20	Structural annotation	PF12643, MF_01019, NF001613, COG1694	NA	NA
UHGV-0156870_21	PHROG	phrog_884	NA	unknown function
UHGV-0156870_21	UniRef90	UniRef90_UPI0012BD7281	NA	NA
UHGV-0156870_21	eggNOG-mapper	365659.smi_0433	NA	NA
UHGV-0156870_21	Pfam	PF07116	NA	DUF1372
UHGV-0156870_21	Structural annotation	PF07116	NA	NA
UHGV-0156870_22	PHROG	phrog_98	NA	unknown function
UHGV-0156870_22	UniRef90	UniRef90_UPI0011706E77	YopX family protein	NA
UHGV-0156870_22	eggNOG-mapper	1158614.I592_03402	YopX protein	NA
UHGV-0156870_22	Pfam	PF09643	YopX protein	YopX
UHGV-0156870_22	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0156870_22	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0156870_23	PHROG	phrog_98	NA	unknown function
UHGV-0156870_23	UniRef90	UniRef90_A0A2C5WIL3	YopX domain-containing protein	NA
UHGV-0156870_23	eggNOG-mapper	1000588.HMPREF9965_1710	YopX protein	NA
UHGV-0156870_23	Pfam	PF09643	YopX protein	YopX
UHGV-0156870_23	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0156870_23	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0156870_24	PHROG	phrog_24146	NA	unknown function
UHGV-0156870_25	PHROG	phrog_1814	NA	unknown function
UHGV-0156870_25	UniRef90	UniRef90_UPI0012BB52A6	NA	NA
UHGV-0156870_25	Pfam	PF07067	NA	DUF1340
UHGV-0156870_25	Structural annotation	PF07067	NA	NA
UHGV-0156870_26	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0156870_26	UniRef90	UniRef90_A0A286QR68	ArpU late transcriptional regulator	NA
UHGV-0156870_26	eggNOG-mapper	173707.Q938L8_9CAUD	NA	NA
UHGV-0156870_26	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0156870_26	Structural annotation	PF05263, MF_00674, TIGR01637, COG1191	NA	NA
UHGV-0156870_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0156870_27	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0156870_27	UniRef90	UniRef90_A0A1F2H8L2	Terminase	NA
UHGV-0156870_27	eggNOG-mapper	1054460.SPPN_00130	DNA packaging	NA
UHGV-0156870_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0156870_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0156870_27	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0156870_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0156870_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0156870_28	UniRef90	UniRef90_A0A2C5WCW2	PBSX family phage terminase large subunit	NA
UHGV-0156870_28	eggNOG-mapper	646413.C5IUJ1_9CAUD	Pfam:Terminase_3C	NA
UHGV-0156870_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0156870_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0156870_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0156870_28	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0156870_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-0156870_29	UniRef90	UniRef90_UPI0011703CB6	phage portal protein	NA
UHGV-0156870_29	eggNOG-mapper	646413.C5IUJ2_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0156870_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0156870_29	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0156870_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0156870_30	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0156870_30	UniRef90	UniRef90_A0A448A8S9	Phage minor capsid 2 family protein	NA
UHGV-0156870_30	eggNOG-mapper	764291.STRUR_2106	Phage minor capsid protein 2	NA
UHGV-0156870_30	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0156870_30	COG	COG2369	NA	NA
UHGV-0156870_30	Structural annotation	PF06152	NA	NA
UHGV-0156870_31	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0156870_31	UniRef90	UniRef90_A0A3S4MNS5	Putative scaffolding protein	NA
UHGV-0156870_31	eggNOG-mapper	646413.C5IUJ4_9CAUD	Phage minor structural protein GP20	NA
UHGV-0156870_31	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0156870_32	PHROG	phrog_544	major head protein	head and packaging
UHGV-0156870_32	UniRef90	UniRef90_C5IUJ5	Major head protein	NA
UHGV-0156870_32	eggNOG-mapper	646413.C5IUJ5_9CAUD	peptidase activity	NA
UHGV-0156870_32	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0156870_32	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0156870_33	UniRef90	UniRef90_A0A3S4QL55	Transcription termination factor	NA
UHGV-0156870_33	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0156870_33	COG	COG0292	Ribosomal protein L20	NA
UHGV-0156870_33	Structural annotation	PF07498	NA	NA
UHGV-0156870_34	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0156870_34	UniRef90	UniRef90_A0A3S4LW47	NA	NA
UHGV-0156870_34	eggNOG-mapper	646413.C5IUJ7_9CAUD	NA	NA
UHGV-0156870_35	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0156870_35	UniRef90	UniRef90_A0A3S4QH21	Putative minor capsid protein 2	NA
UHGV-0156870_35	eggNOG-mapper	537874.B3GW07_9CAUD	Minor capsid protein	NA
UHGV-0156870_35	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0156870_35	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0156870_36	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0156870_36	UniRef90	UniRef90_A0A3S4NDX7	Putative minor capsid protein	NA
UHGV-0156870_36	eggNOG-mapper	646413.C5IUJ8_9CAUD	Minor capsid protein	NA
UHGV-0156870_36	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0156870_36	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0156870_37	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0156870_37	UniRef90	UniRef90_A0A448A8V0	NA	NA
UHGV-0156870_37	eggNOG-mapper	646413.C5IUJ9_9CAUD	Minor capsid protein from bacteriophage	NA
UHGV-0156870_37	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0156870_37	Structural annotation	PF12691	NA	NA
UHGV-0156870_38	PHROG	phrog_820	major tail protein	tail
UHGV-0156870_38	UniRef90	UniRef90_A0A448A8F6	Tail shaft protein	NA
UHGV-0156870_38	eggNOG-mapper	646413.C5IUK0_9CAUD	NA	NA
UHGV-0156870_38	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0156870_39	PHROG	phrog_1061	NA	unknown function
UHGV-0156870_39	UniRef90	UniRef90_A0A139RN56	NA	NA
UHGV-0156870_39	eggNOG-mapper	1035189.HMPREF9954_0315	NA	NA
UHGV-0156870_39	Structural annotation	PF10666	NA	NA
UHGV-0156870_40	PHROG	phrog_706	NA	unknown function
UHGV-0156870_40	UniRef90	UniRef90_A0A448A9A1	NA	NA
UHGV-0156870_40	eggNOG-mapper	646413.C5IUK2_9CAUD	Bacteriophage Gp15 protein	NA
UHGV-0156870_40	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0156870_40	Structural annotation	PF06854	NA	NA
UHGV-0156870_41	PHROG	phrog_1204	tail protein	tail
UHGV-0156870_41	UniRef90	UniRef90_A0A3S4MAR6	NA	NA
UHGV-0156870_41	eggNOG-mapper	646413.C5IUK3_9CAUD	transmembrane transport	NA
UHGV-0156870_41	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0156870_41	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-0156870_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0156870_42	UniRef90	UniRef90_A0A3S4NZK7	Prophage Lp1 protein 51	NA
UHGV-0156870_42	eggNOG-mapper	646413.C5IUK4_9CAUD	NA	NA
UHGV-0156870_42	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-0156870_43	PHROG	phrog_3558	tail protein	tail
UHGV-0156870_43	UniRef90	UniRef90_A0A2C5WEG8	Prophage_tail domain-containing protein	NA
UHGV-0156870_43	eggNOG-mapper	646413.C5IUK5_9CAUD	peptidoglycan catabolic process	NA
UHGV-0156870_43	Pfam	PF08481	GBS Bsp-like repeat	GBS_Bsp-like
UHGV-0156870_43	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0156870_43	Structural annotation	PF14594, PF08481, TIGR01665, COG4926, COG3330	NA	NA
UHGV-0156870_44	PHROG	phrog_17240	NA	unknown function
UHGV-0156870_44	eggNOG-mapper	1462527.CCDM010000010_gene536	lipolytic protein G-D-S-L family	NA
UHGV-0156870_44	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0156870_44	Structural annotation	PF09956, PF01095, COG5471	NA	NA