UHGV-0156898

Genome information

Genome length 26,855 bps

CDS count 40

Completeness 65.86% (medium-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-0156898
vOTU ID	vOTU-027774
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_451448
BioSample	SAMN05971457
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.86% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.18
Jumbo phage	No

Genome content
Genome length	26,855 bps
GC content	48.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	92.31%
Average CDS length	621.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0156898_2	UniRef90	UniRef90_UPI0009523D83	helix-turn-helix domain containing protein	NA
UHGV-0156898_2	eggNOG-mapper	1232443.BAIA02000078_gene38	NA	NA
UHGV-0156898_2	Pfam	PF04218	CENP-B N-terminal DNA-binding domain	CENP-B_N
UHGV-0156898_2	Structural annotation	PF13542	NA	NA
UHGV-0156898_3	PHROG	phrog_1233	NA	unknown function
UHGV-0156898_3	eggNOG-mapper	445972.ANACOL_01876	NA	NA
UHGV-0156898_3	Structural annotation	PF13058	NA	NA
UHGV-0156898_4	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0156898_4	PHROG	phrog_10250	NA	unknown function
UHGV-0156898_4	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0156898_4	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0156898_4	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0156898_4	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0156898_4	COG	COG1783	Phage terminase large subunit	NA
UHGV-0156898_4	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0156898_5	PHROG	phrog_64	portal protein	head and packaging
UHGV-0156898_5	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0156898_5	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0156898_5	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0156898_5	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0156898_6	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0156898_6	UniRef90	UniRef90_A0A1C7FSE6	Phage_Mu_F domain-containing protein	NA
UHGV-0156898_6	eggNOG-mapper	1329516.JPST01000018_gene2643	cell adhesion	NA
UHGV-0156898_6	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0156898_6	COG	COG2369	NA	NA
UHGV-0156898_6	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0156898_7	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0156898_7	UniRef90	UniRef90_UPI0018AA0B5A	HK97 gp10 family phage protein	NA
UHGV-0156898_7	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0156898_7	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0156898_9	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0156898_9	UniRef90	UniRef90_A0A1H0H3E1	HNH endonuclease	NA
UHGV-0156898_9	eggNOG-mapper	357276.EL88_11520	HNH endonuclease domain protein	NA
UHGV-0156898_9	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0156898_9	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0156898_9	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0156898_9	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0156898_9	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0156898_10	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0156898_10	Structural annotation	PF06810	NA	NA
UHGV-0156898_11	PHROG	phrog_544	major head protein	head and packaging
UHGV-0156898_11	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0156898_11	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0156898_11	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0156898_12	eggNOG-mapper	1226322.HMPREF1545_00051	NA	NA
UHGV-0156898_14	PHROG	phrog_17977	NA	unknown function
UHGV-0156898_14	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0156898_14	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0156898_15	PHROG	phrog_17405	head protein	head and packaging
UHGV-0156898_15	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0156898_15	Structural annotation	PF11367	NA	NA
UHGV-0156898_16	PHROG	phrog_885	major tail protein	tail
UHGV-0156898_16	UniRef90	UniRef90_UPI00164A9E72	chitobiase/beta-hexosaminidase C-terminal domain-containing protein	NA
UHGV-0156898_16	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0156898_16	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0156898_17	PHROG	phrog_18646	NA	unknown function
UHGV-0156898_17	UniRef90	UniRef90_B6CXF0	Peptidase-colicin	NA
UHGV-0156898_19	PHROG	phrog_23464	NA	unknown function
UHGV-0156898_19	UniRef90	UniRef90_A0A1C6CIN9	Phage-related protein	NA
UHGV-0156898_19	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0156898_19	Pfam	PF05017	TMP repeat	TMP
UHGV-0156898_19	COG	COG5283	Phage-related tail protein	NA
UHGV-0156898_19	Structural annotation	PF20155	NA	NA
UHGV-0156898_20	eggNOG-mapper	1235797.C816_02660	NA	NA
UHGV-0156898_20	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0156898_21	PHROG	phrog_13879	NA	unknown function
UHGV-0156898_21	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-0156898_21	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-0156898_23	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0156898_23	PHROG	phrog_11157	NA	unknown function
UHGV-0156898_23	UniRef90	UniRef90_G9YSD2	Big_13 domain-containing protein	NA
UHGV-0156898_23	eggNOG-mapper	1235797.C816_02657	NA	NA
UHGV-0156898_23	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0156898_23	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0156898_23	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0156898_23	Structural annotation	PF09136, PF13750, MF_04116, NF032891, COG2372	NA	NA
UHGV-0156898_27	PHROG	phrog_4105	NA	unknown function
UHGV-0156898_27	eggNOG-mapper	411460.RUMTOR_01326	NA	NA
UHGV-0156898_28	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0156898_28	UniRef90	UniRef90_UPI001C38857A	NUMOD4 domain-containing protein	NA
UHGV-0156898_28	eggNOG-mapper	945021.TEH_18310	NUMOD4 motif	NA
UHGV-0156898_28	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0156898_28	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0156898_28	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0156898_28	Structural annotation	PF04936	NA	NA
UHGV-0156898_29	PHROG	phrog_443	holin	lysis
UHGV-0156898_29	UniRef90	UniRef90_UPI001C3AB75B	Holin	NA
UHGV-0156898_29	eggNOG-mapper	742733.HMPREF9469_01797	Putative lactococcus lactis phage r1t holin	NA
UHGV-0156898_29	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0156898_29	Structural annotation	PF16945	NA	NA
UHGV-0156898_31	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0156898_31	PHROG	phrog_7698	endolysin	lysis
UHGV-0156898_31	UniRef90	UniRef90_R5HQL6	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0156898_31	eggNOG-mapper	1519439.JPJG01000059_gene1952	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0156898_31	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0156898_31	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0156898_31	Structural annotation	PF05203, PF01510, MF_04111, MF_01420, NF005852, COG1372	NA	NA
UHGV-0156898_32	UniRef90	UniRef90_A0A1Y4W7E1	PadR family transcriptional regulator	NA
UHGV-0156898_32	eggNOG-mapper	1105031.HMPREF1141_0637	Transcriptional regulator PadR-like family	NA
UHGV-0156898_32	COG	COG1695	DNA-binding transcriptional regulator, PadR family	NA
UHGV-0156898_33	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0156898_34	PHROG	phrog_3754	NA	unknown function
UHGV-0156898_34	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0156898_35	PHROG	phrog_21718	NA	unknown function
UHGV-0156898_35	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0156898_36	PHROG	phrog_22984	NA	unknown function
UHGV-0156898_37	PHROG	phrog_16490	NA	unknown function
UHGV-0156898_37	eggNOG-mapper	1226322.HMPREF1545_00076	NA	NA
UHGV-0156898_38	PHROG	phrog_20016	NA	unknown function
UHGV-0156898_38	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0156898_38	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0156898_38	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0156898_39	PHROG	phrog_28802	NA	unknown function
UHGV-0156898_39	Structural annotation	PF12510	NA	NA
UHGV-0156898_40	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA