UHGV-0156981

Genome information

Genome length 26,065 bps

CDS count 40

Completeness 75.46% (medium-quality)

geNomad score 0.9728

Prediction confidence Confident

Genome information
Genome ID	UHGV-0156981
vOTU ID	vOTU-022132
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_495811
BioSample	SAMN06110053
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.46% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9728
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.93
Jumbo phage	No

Genome content
Genome length	26,065 bps
GC content	57.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	91.61%
Average CDS length	603.68 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0156981_1	PHROG	phrog_123	tail terminator	connector
UHGV-0156981_1	UniRef90	UniRef90_R6D1D5	NA	NA
UHGV-0156981_1	eggNOG-mapper	1123263.AUKY01000068_gene495	NA	NA
UHGV-0156981_1	Structural annotation	PF06141	NA	NA
UHGV-0156981_2	PHROG	phrog_387	neck protein	connector
UHGV-0156981_2	eggNOG-mapper	938278.CAJO01000051_gene784	NA	NA
UHGV-0156981_3	PHROG	phrog_501	head closure Hc1	connector
UHGV-0156981_3	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0156981_3	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0156981_4	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0156981_4	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0156981_4	Pfam	PF09355	NA	Phage_Gp19
UHGV-0156981_4	Structural annotation	PF09355	NA	NA
UHGV-0156981_5	PHROG	phrog_267	major head protein	head and packaging
UHGV-0156981_5	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0156981_5	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0156981_5	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0156981_6	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0156981_6	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-0156981_6	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-0156981_6	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0156981_6	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0156981_7	PHROG	phrog_3675	NA	unknown function
UHGV-0156981_7	UniRef90	UniRef90_A0A0E4H649	YjcQ protein	NA
UHGV-0156981_7	eggNOG-mapper	1120978.KB894082_gene1061	YjcQ protein	NA
UHGV-0156981_7	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0156981_7	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0156981_8	Structural annotation	PF06442, MF_01194, NF000331, COG5475	NA	NA
UHGV-0156981_9	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0156981_9	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-0156981_9	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0156981_9	Pfam	PF21814	NA	DUF6883
UHGV-0156981_9	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0156981_9	Structural annotation	PF11429	NA	NA
UHGV-0156981_10	PHROG	phrog_104	portal protein	head and packaging
UHGV-0156981_10	UniRef90	UniRef90_A0A3E2U200	Phage portal protein	NA
UHGV-0156981_10	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0156981_10	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0156981_10	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0156981_11	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0156981_11	UniRef90	UniRef90_UPI001F1A3C47	terminase large subunit	NA
UHGV-0156981_11	eggNOG-mapper	748224.HMPREF9436_01467	phage terminase, large subunit	NA
UHGV-0156981_11	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0156981_11	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0156981_12	UniRef90	UniRef90_R6GFM0	Conserved domain protein	NA
UHGV-0156981_12	Structural annotation	PF19962	NA	NA
UHGV-0156981_13	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0156981_13	UniRef90	UniRef90_UPI0015F33F36	HNH endonuclease	NA
UHGV-0156981_13	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-0156981_14	UniRef90	UniRef90_A0A5C6RH43	ATP-binding protein	NA
UHGV-0156981_14	eggNOG-mapper	930166.CD58_16850	NA	NA
UHGV-0156981_14	Structural annotation	PF10443, MF_00553, TIGR01242, COG5635	NA	NA
UHGV-0156981_15	eggNOG-mapper	1297617.JPJD01000059_gene2640	NA	NA
UHGV-0156981_15	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0156981_17	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0156981_17	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0156981_17	UniRef90	UniRef90_A0A1Q6T350	ParB domain-containing protein	NA
UHGV-0156981_17	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-0156981_17	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0156981_17	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0156981_17	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0156981_18	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0156981_18	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0156981_18	UniRef90	UniRef90_A0A6N8H6J9	ParA family protein	NA
UHGV-0156981_18	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-0156981_18	Pfam	PF13614	AAA domain	AAA_31
UHGV-0156981_18	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0156981_18	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0156981_19	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0156981_19	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0156981_19	UniRef90	UniRef90_A0A1Q6T363	DNA helicase	NA
UHGV-0156981_19	eggNOG-mapper	411471.SUBVAR_05838	Participates in initiation and elongation during chromosome replication	NA
UHGV-0156981_19	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0156981_19	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0156981_19	COG	COG0305	Replicative DNA helicase	NA
UHGV-0156981_19	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0156981_20	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0156981_20	UniRef90	UniRef90_A0A6N8H2D2	Helix-turn-helix domain-containing protein	NA
UHGV-0156981_20	eggNOG-mapper	411471.SUBVAR_05835	Helix-turn-helix domain	NA
UHGV-0156981_20	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0156981_20	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0156981_20	Structural annotation	PF13730, MF_01909, TIGR04176, COG3355	NA	NA
UHGV-0156981_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0156981_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0156981_21	UniRef90	UniRef90_A0A1Q6T3F1	Single-stranded DNA-binding protein	NA
UHGV-0156981_21	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0156981_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0156981_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0156981_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0156981_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0156981_21	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0156981_22	PHROG	phrog_1029	NA	unknown function
UHGV-0156981_22	UniRef90	UniRef90_T0TFF0	NA	NA
UHGV-0156981_22	eggNOG-mapper	411471.SUBVAR_05833	NA	NA
UHGV-0156981_22	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0156981_23	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0156981_23	UniRef90	UniRef90_A0A429ZWU1	Replication terminator protein	NA
UHGV-0156981_23	eggNOG-mapper	411471.SUBVAR_05832	NA	NA
UHGV-0156981_25	PHROG	phrog_7566	NA	unknown function
UHGV-0156981_25	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0156981_26	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0156981_26	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0156981_27	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0156981_27	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0156981_27	Pfam	PF05772	NinB protein	NinB
UHGV-0156981_27	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0156981_28	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0156981_28	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0156981_29	PHROG	phrog_10280	NA	unknown function
UHGV-0156981_29	eggNOG-mapper	1211640.K4JWC4_9CAUD	NA	NA
UHGV-0156981_33	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0156981_33	UniRef90	UniRef90_F0YWQ6	Conserved domain protein	NA
UHGV-0156981_33	eggNOG-mapper	556261.HMPREF0240_01268	Helix-turn-helix	NA
UHGV-0156981_33	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0156981_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0156981_33	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-0156981_34	UniRef90	UniRef90_A0A1Y3WR65	Transcriptional regulator	NA
UHGV-0156981_34	eggNOG-mapper	1111454.HMPREF1250_1029	Helix-turn-helix XRE-family like proteins	NA
UHGV-0156981_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0156981_34	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0156981_35	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0156981_35	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0156981_35	UniRef90	UniRef90_A0A1Q6T3E1	HTH cro/C1-type domain-containing protein	NA
UHGV-0156981_35	eggNOG-mapper	1118057.CAGX01000020_gene1659	Represses a number of genes involved in the response to DNA damage (SOS response)	NA
UHGV-0156981_35	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0156981_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0156981_35	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0156981_35	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0156981_35	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0156981_36	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0156981_36	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0156981_36	UniRef90	UniRef90_A0A837SX23	DNA polymerase III polC-type	NA
UHGV-0156981_36	eggNOG-mapper	1235790.C805_02899	DNA polymerase family B, exonuclease domain	NA
UHGV-0156981_36	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0156981_36	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0156981_36	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0156981_36	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0156981_36	COG	COG2176	DNA polymerase III, alpha subunit (gram-positive type)	NA
UHGV-0156981_37	PHROG	phrog_22683	NA	unknown function
UHGV-0156981_37	UniRef90	UniRef90_A0A3E2U205	NA	NA
UHGV-0156981_37	eggNOG-mapper	482234.SCAZ3_03515	NA	NA
UHGV-0156981_37	AcrCatalog	cluster_3962	NA	NA
UHGV-0156981_37	Pfam	PF13783	NA	DUF4177
UHGV-0156981_37	Structural annotation	PF13783, NF008362, COG3499	NA	NA
UHGV-0156981_38	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0156981_38	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0156981_38	UniRef90	UniRef90_A0A1Q6T3W5	HicB family protein	NA
UHGV-0156981_38	eggNOG-mapper	718252.FP2_04880	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0156981_38	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0156981_38	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0156981_38	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0156981_39	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0156981_39	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0156981_39	UniRef90	UniRef90_A0A1Q6T334	Toxin HicA	NA
UHGV-0156981_39	eggNOG-mapper	478749.BRYFOR_07601	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0156981_39	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0156981_39	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0156981_39	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0156981_40	KOfam	K14059	int; integrase	NA
UHGV-0156981_40	PHROG	phrog_1	integrase	integration and excision
UHGV-0156981_40	UniRef90	UniRef90_A0A1Q6T3G6	Tyr recombinase domain-containing protein	NA
UHGV-0156981_40	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-0156981_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0156981_40	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0156981_40	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA