UHGV-0157063

Genome information

Genome length 35,114 bps

CDS count 54

Completeness 75.88% (medium-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0157063
vOTU ID	vOTU-027786
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_448134
BioSample	SAMN05971701
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.88% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.23
Jumbo phage	No

Genome content
Genome length	35,114 bps
GC content	49.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	93.66%
Average CDS length	612.28 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0157063_1	eggNOG-mapper	1121866.AUGK01000003_gene1405	YqaJ viral recombinase family	NA
UHGV-0157063_1	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0157063_3	Structural annotation	PF05037, NF005674	NA	NA
UHGV-0157063_4	PHROG	phrog_1485	NA	unknown function
UHGV-0157063_4	UniRef90	UniRef90_H1CES0	NA	NA
UHGV-0157063_4	eggNOG-mapper	1415774.U728_1099	NA	NA
UHGV-0157063_4	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-0157063_5	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0157063_5	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0157063_5	eggNOG-mapper	1567010.A0A0A7RU90_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-0157063_5	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0157063_6	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0157063_6	PHROG	phrog_28876	metal-dependent phosphohydrolase	other
UHGV-0157063_6	UniRef90	UniRef90_A0A1C5MUY3	Predicted HD-superfamily hydrolase	NA
UHGV-0157063_6	eggNOG-mapper	1235800.C819_00499	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-0157063_6	Pfam	PF01966	HD domain	HD
UHGV-0157063_6	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0157063_6	Structural annotation	PF21447, MF_01427, NF010007, COG3481	NA	NA
UHGV-0157063_7	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0157063_7	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0157063_7	UniRef90	UniRef90_A0A6I2QY16	FAD-dependent thymidylate synthase	NA
UHGV-0157063_7	eggNOG-mapper	690850.Desaf_0003	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-0157063_7	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0157063_7	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-0157063_7	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0157063_7	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0157063_10	PHROG	phrog_30550	NA	unknown function
UHGV-0157063_10	UniRef90	UniRef90_A0A2N2CRJ1	Hydrolase_2 domain-containing protein	NA
UHGV-0157063_10	eggNOG-mapper	1519439.JPJG01000077_gene920	Cell Wall Hydrolase	NA
UHGV-0157063_10	Structural annotation	TIGR02869	NA	NA
UHGV-0157063_11	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0157063_11	UniRef90	UniRef90_H1CER3	PriCT_1 domain-containing protein	NA
UHGV-0157063_11	eggNOG-mapper	1121866.AUGK01000003_gene1409	Phage plasmid primase, P4 family domain protein	NA
UHGV-0157063_11	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0157063_11	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-0157063_11	Structural annotation	PF08708, PF09250, COG4983	NA	NA
UHGV-0157063_12	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0157063_12	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0157063_12	UniRef90	UniRef90_UPI001D0750B0	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0157063_12	eggNOG-mapper	908340.HMPREF9406_0263	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0157063_12	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0157063_12	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0157063_12	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0157063_13	PHROG	phrog_1156	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0157063_13	UniRef90	UniRef90_H1CER1	Phage/plasmid primase, P4 family domain-containing protein	NA
UHGV-0157063_13	eggNOG-mapper	649747.HMPREF0083_00553	Phage plasmid primase, P4 family	NA
UHGV-0157063_13	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0157063_13	Pfam	PF19263	NA	DUF5906
UHGV-0157063_13	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0157063_13	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0157063_13	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0157063_13	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF005477, COG3378	NA	NA
UHGV-0157063_15	PHROG	phrog_22389	NA	unknown function
UHGV-0157063_15	Structural annotation	PF01402, COG4710	NA	NA
UHGV-0157063_18	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0157063_18	UniRef90	UniRef90_UPI001D08D6B6	DNA-packaging protein	NA
UHGV-0157063_18	eggNOG-mapper	1280663.ATVR01000009_gene2143	NA	NA
UHGV-0157063_18	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0157063_18	Structural annotation	PF16677	NA	NA
UHGV-0157063_19	Structural annotation	PF13069	NA	NA
UHGV-0157063_24	UniRef90	UniRef90_UPI001D08C4A6	helix-turn-helix domain-containing protein	NA
UHGV-0157063_24	Structural annotation	PF20075, TIGR03070	NA	NA
UHGV-0157063_25	Structural annotation	PF01396	NA	NA
UHGV-0157063_26	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0157063_26	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0157063_26	UniRef90	UniRef90_H1CEQ0	Resolvase/invertase-type recombinase catalytic domain-containing protein	NA
UHGV-0157063_26	eggNOG-mapper	1294142.CINTURNW_1680	Resolvase, N terminal domain	NA
UHGV-0157063_26	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0157063_26	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0157063_26	Structural annotation	PF00239, NF009949, COG1961	NA	NA
UHGV-0157063_28	PHROG	phrog_1233	NA	unknown function
UHGV-0157063_28	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0157063_28	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0157063_29	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0157063_29	UniRef90	UniRef90_A0A6I2QXZ5	Phage terminase large subunit	NA
UHGV-0157063_29	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0157063_29	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0157063_29	COG	COG5410	NA	NA
UHGV-0157063_29	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0157063_30	PHROG	phrog_64	portal protein	head and packaging
UHGV-0157063_30	UniRef90	UniRef90_UPI001C02F349	phage portal protein	NA
UHGV-0157063_30	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0157063_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0157063_30	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0157063_33	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0157063_33	UniRef90	UniRef90_UPI00164DD2D5	NA	NA
UHGV-0157063_33	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-0157063_33	Pfam	PF17236	NA	DUF5309
UHGV-0157063_33	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-0157063_34	UniRef90	UniRef90_UPI001898B4B4	phage head-tail connector protein	NA
UHGV-0157063_34	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0157063_34	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0157063_34	Structural annotation	TIGR01560	NA	NA
UHGV-0157063_35	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0157063_37	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0157063_38	PHROG	phrog_158	major tail protein	tail
UHGV-0157063_38	UniRef90	UniRef90_UPI00189AB4AD	phage tail protein	NA
UHGV-0157063_38	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0157063_38	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0157063_38	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0157063_39	UniRef90	UniRef90_UPI0018999178	NA	NA
UHGV-0157063_39	eggNOG-mapper	469596.HMPREF9488_01311	NA	NA
UHGV-0157063_39	Pfam	PF16478	NA	DUF5055
UHGV-0157063_39	Structural annotation	PF16478	NA	NA
UHGV-0157063_40	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0157063_41	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0157063_41	eggNOG-mapper	445971.ANASTE_00086	phage tail tape measure protein	NA
UHGV-0157063_41	COG	COG5412	Phage-related protein	NA
UHGV-0157063_41	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0157063_42	PHROG	phrog_1194	NA	unknown function
UHGV-0157063_42	eggNOG-mapper	1298920.KI911353_gene4840	NA	NA
UHGV-0157063_42	Pfam	PF20458	NA	DUF6711
UHGV-0157063_42	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0157063_43	PHROG	phrog_13879	NA	unknown function
UHGV-0157063_43	eggNOG-mapper	665956.HMPREF1032_03630	NA	NA
UHGV-0157063_43	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0157063_44	PHROG	phrog_18725	NA	unknown function
UHGV-0157063_44	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0157063_45	PHROG	phrog_37900	NA	unknown function
UHGV-0157063_45	UniRef90	UniRef90_UPI00164D57E4	NA	NA
UHGV-0157063_45	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0157063_45	Pfam	PF19789	NA	DUF6273
UHGV-0157063_45	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0157063_45	Structural annotation	PF19789, PF14686, TIGR04183, COG2512	NA	NA
UHGV-0157063_46	PHROG	phrog_30516	NA	unknown function
UHGV-0157063_46	Structural annotation	PF05635, NF008911	NA	NA
UHGV-0157063_48	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0157063_48	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0157063_48	UniRef90	UniRef90_UPI00164D8919	RNA-directed DNA polymerase	NA
UHGV-0157063_48	eggNOG-mapper	1410650.JHWL01000003_gene2820	Reverse transcriptase	NA
UHGV-0157063_48	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0157063_48	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0157063_48	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0157063_48	Structural annotation	PF00078, TIGR04416, COG3344	NA	NA
UHGV-0157063_49	PHROG	phrog_30034	NA	unknown function
UHGV-0157063_49	UniRef90	UniRef90_A0A8D9UHK2	Chitin oligosaccharide deacetylase	NA
UHGV-0157063_49	eggNOG-mapper	994573.T472_0212005	NA	NA
UHGV-0157063_49	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0157063_50	PHROG	phrog_1863	NA	unknown function
UHGV-0157063_50	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0157063_52	PHROG	phrog_14030	NA	unknown function
UHGV-0157063_52	UniRef90	UniRef90_UPI00164EA432	SH3 domain-containing protein	NA
UHGV-0157063_52	eggNOG-mapper	1235797.C816_02842	mannosyl-glycoprotein	NA
UHGV-0157063_52	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0157063_52	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0157063_52	Structural annotation	PF08460, PF10030, TIGR02594, NF041850, COG4322, COG4991	NA	NA