UHGV-0157076

Genome information

Genome length 40,283 bps

CDS count 61

Completeness 70.61% (medium-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0157076
vOTU ID	vOTU-027746
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_449522
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.61% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	4
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.22
Jumbo phage	No

Genome content
Genome length	40,283 bps
GC content	36.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	90.22%
Average CDS length	599.61 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0157076_1	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0157076_1	UniRef90	UniRef90_A0A8D9UIV2	Terminase	NA
UHGV-0157076_1	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-0157076_1	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0157076_1	COG	COG5410	NA	NA
UHGV-0157076_1	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0157076_2	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0157076_2	UniRef90	UniRef90_A0A352SH29	RNA polymerase subunit sigma-70 (Fragment)	NA
UHGV-0157076_2	eggNOG-mapper	97138.C820_00772	sigma factor activity	NA
UHGV-0157076_2	Pfam	PF07374	NA	DUF1492
UHGV-0157076_2	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0157076_2	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0157076_3	UniRef90	UniRef90_A0A8D9UIR9	RimK-related lysine biosynthesis protein	NA
UHGV-0157076_4	PHROG	phrog_64	portal protein	head and packaging
UHGV-0157076_4	UniRef90	UniRef90_A0A8D9PG58	Portal protein	NA
UHGV-0157076_4	eggNOG-mapper	397290.C810_01397	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0157076_4	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0157076_4	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0157076_6	PHROG	phrog_544	major head protein	head and packaging
UHGV-0157076_6	UniRef90	UniRef90_A0A8D9PGL1	Major capsid protein	NA
UHGV-0157076_6	eggNOG-mapper	608534.GCWU000341_02293	NA	NA
UHGV-0157076_6	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0157076_6	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0157076_7	UniRef90	UniRef90_A0A8D9UIY7	Rho termination factor	NA
UHGV-0157076_7	Structural annotation	PF21169	NA	NA
UHGV-0157076_8	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0157076_9	PHROG	phrog_1863	NA	unknown function
UHGV-0157076_9	eggNOG-mapper	1232452.BAIB02000007_gene1606	NA	NA
UHGV-0157076_10	PHROG	phrog_18218	NA	unknown function
UHGV-0157076_10	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0157076_10	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0157076_10	Structural annotation	PF06946	NA	NA
UHGV-0157076_11	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0157076_11	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0157076_12	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0157076_12	AcrCatalog	cluster_24841	NA	NA
UHGV-0157076_13	Structural annotation	PF05657	NA	NA
UHGV-0157076_14	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-0157076_14	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0157076_16	PHROG	phrog_36112	NA	unknown function
UHGV-0157076_16	UniRef90	UniRef90_A0A8D9PG71	Tail assembly chaperone protein	NA
UHGV-0157076_16	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-0157076_16	Structural annotation	PF10666	NA	NA
UHGV-0157076_18	PHROG	phrog_28918	NA	unknown function
UHGV-0157076_18	UniRef90	UniRef90_A0A2H4J4V9	Putative Tmp	NA
UHGV-0157076_18	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0157076_18	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0157076_19	UniRef90	UniRef90_A0A8D9UIY0	NA	NA
UHGV-0157076_19	eggNOG-mapper	411468.CLOSCI_01239	NA	NA
UHGV-0157076_19	Pfam	PF16729	NA	DUF5067
UHGV-0157076_19	Structural annotation	PF16729, TIGR04087, COG3353	NA	NA
UHGV-0157076_20	UniRef90	UniRef90_A0A8D9UIV6	RNAse domain protein	NA
UHGV-0157076_22	PHROG	phrog_1401	NA	unknown function
UHGV-0157076_22	Structural annotation	PF07761	NA	NA
UHGV-0157076_23	PHROG	phrog_16267	NA	unknown function
UHGV-0157076_23	UniRef90	UniRef90_A0A8D9PGP3	Minor structural protein	NA
UHGV-0157076_23	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-0157076_23	COG	COG4926	Phage-related protein	NA
UHGV-0157076_23	Structural annotation	PF16466, NF033848, COG3500	NA	NA
UHGV-0157076_24	PHROG	phrog_2566	NA	unknown function
UHGV-0157076_26	KOfam	K07273	acm; lysozyme	NA
UHGV-0157076_26	PHROG	phrog_291	endolysin	lysis
UHGV-0157076_26	UniRef90	UniRef90_A0A8D9UIP9	Lysozyme	NA
UHGV-0157076_26	eggNOG-mapper	411470.RUMGNA_00451	COG COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0157076_26	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0157076_26	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0157076_26	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0157076_27	Structural annotation	PF03444, MF_00732, NF003025, COG1321	NA	NA
UHGV-0157076_28	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0157076_28	UniRef90	UniRef90_R6ZMD8	Toxin-antitoxin system antitoxin component Xre family	NA
UHGV-0157076_28	eggNOG-mapper	665950.HMPREF1025_02562	TRANSCRIPTIONal	NA
UHGV-0157076_28	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0157076_28	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0157076_29	UniRef90	UniRef90_UPI000E4D6E81	helix-turn-helix domain-containing protein	NA
UHGV-0157076_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0157076_29	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0157076_29	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0157076_30	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0157076_30	UniRef90	UniRef90_A0A8D9PGL6	P22_AR protein	NA
UHGV-0157076_30	eggNOG-mapper	596329.HMPREF0631_1352	BRO family, N-terminal domain protein	NA
UHGV-0157076_30	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0157076_30	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0157076_30	COG	COG3617	Prophage antirepressor	NA
UHGV-0157076_30	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0157076_31	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0157076_31	PHROG	phrog_14642	endolysin	lysis
UHGV-0157076_31	UniRef90	UniRef90_A0A8D9PGU7	Cell Wall Hydrolase	NA
UHGV-0157076_31	eggNOG-mapper	742733.HMPREF9469_00034	Cell Wall Hydrolase	NA
UHGV-0157076_31	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0157076_31	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0157076_31	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0157076_32	UniRef90	UniRef90_A0A8D9UIQ5	Sporulation initiation factor	NA
UHGV-0157076_32	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0157076_32	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0157076_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0157076_33	PHROG	phrog_26861	NA	unknown function
UHGV-0157076_33	UniRef90	UniRef90_A0A8D9PGK1	Single strand binding protein	NA
UHGV-0157076_33	eggNOG-mapper	515620.EUBELI_01590	NA	NA
UHGV-0157076_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0157076_33	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0157076_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0157076_33	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0157076_35	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0157076_35	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0157076_35	UniRef90	UniRef90_R7BHE4	Phage-related protein	NA
UHGV-0157076_35	eggNOG-mapper	1298920.KI911353_gene2731	nuclear chromosome segregation	NA
UHGV-0157076_35	Pfam	PF13476	AAA domain	AAA_23
UHGV-0157076_35	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0157076_35	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0157076_37	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0157076_37	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0157076_37	UniRef90	UniRef90_A0A317UEK3	Recombinase RecT	NA
UHGV-0157076_37	eggNOG-mapper	1298920.KI911353_gene2727	RecT family	NA
UHGV-0157076_37	Pfam	PF03837	RecT family	RecT
UHGV-0157076_37	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0157076_37	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0157076_37	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0157076_39	KOfam	K06940	NA	NA
UHGV-0157076_39	PHROG	phrog_32498	NA	unknown function
UHGV-0157076_39	UniRef90	UniRef90_A0A173SAY4	Flagellin N-methylase	NA
UHGV-0157076_39	eggNOG-mapper	397290.C810_01479	Putative zinc- or iron-chelating domain	NA
UHGV-0157076_39	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0157076_40	PHROG	phrog_25456	NA	unknown function
UHGV-0157076_41	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0157076_41	UniRef90	UniRef90_R7BIJ8	Putative phage-related hydrolase	NA
UHGV-0157076_41	eggNOG-mapper	1122985.HMPREF1991_02241	NA	NA
UHGV-0157076_41	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0157076_41	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0157076_42	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0157076_42	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0157076_42	eggNOG-mapper	1232453.BAIF02000057_gene1138	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0157076_42	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0157076_42	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-0157076_44	PHROG	phrog_1578	NA	unknown function
UHGV-0157076_44	eggNOG-mapper	637730.C8XUQ6_9CAUD	NA	NA
UHGV-0157076_45	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0157076_45	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0157076_45	UniRef90	UniRef90_A0A1I6JG45	Single-stranded DNA-binding protein	NA
UHGV-0157076_45	eggNOG-mapper	1235790.C805_03410	Single-stranded DNA-binding protein	NA
UHGV-0157076_45	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0157076_45	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0157076_45	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0157076_45	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0157076_45	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0157076_46	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0157076_46	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0157076_46	UniRef90	UniRef90_A0A1G5ET13	Methyltransferase	NA
UHGV-0157076_46	eggNOG-mapper	1122243.KB903771_gene1539	DNA methylase	NA
UHGV-0157076_46	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0157076_46	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0157076_46	COG	COG0863	DNA modification methylase	NA
UHGV-0157076_46	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0157076_47	PHROG	phrog_19106	NA	unknown function
UHGV-0157076_47	UniRef90	UniRef90_R6RVQ6	GIY-YIG domain-containing protein	NA
UHGV-0157076_47	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0157076_47	Structural annotation	TIGR01453	NA	NA
UHGV-0157076_50	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0157076_50	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0157076_50	UniRef90	UniRef90_UPI000462F5E4	site-specific DNA-methyltransferase	NA
UHGV-0157076_50	eggNOG-mapper	1345695.CLSA_c30050	DNA methylase	NA
UHGV-0157076_50	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0157076_50	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0157076_50	COG	COG0863	DNA modification methylase	NA
UHGV-0157076_50	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0157076_53	PHROG	phrog_6251	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UHGV-0157076_53	UniRef90	UniRef90_A0A098AW53	Phage replication protein	NA
UHGV-0157076_53	eggNOG-mapper	1231057.AMGD01000018_gene3636	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0157076_53	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0157076_53	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0157076_53	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0157076_53	Structural annotation	PF09524, PF04492, TIGR02220, TIGR01714	NA	NA
UHGV-0157076_56	PHROG	phrog_9804	NA	unknown function
UHGV-0157076_56	UniRef90	UniRef90_A0A292SPH8	Inhibitor_G39P domain-containing protein	NA
UHGV-0157076_56	eggNOG-mapper	1410650.JHWL01000003_gene2847	Loader and inhibitor of phage G40P	NA
UHGV-0157076_56	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0157076_56	Structural annotation	PF11417	NA	NA
UHGV-0157076_57	UniRef90	UniRef90_A0A8D9UJ07	Restriction endonuclease	NA
UHGV-0157076_57	Pfam	PF18912	Double zinc ribbon domain	DZR_2
UHGV-0157076_59	UniRef90	UniRef90_A0A8D9PGK7	Response regulator	NA
UHGV-0157076_59	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0157076_60	KOfam	K14059	int; integrase	NA
UHGV-0157076_60	PHROG	phrog_1	integrase	integration and excision
UHGV-0157076_60	UniRef90	UniRef90_A0A8D9PGQ3	Integrase	NA
UHGV-0157076_60	eggNOG-mapper	411461.DORFOR_02986	NA	NA
UHGV-0157076_60	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0157076_60	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0157076_60	Structural annotation	PF00589, PF02920, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0157076_61	KOfam	K03649	mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]	NA
UHGV-0157076_61	UniRef90	UniRef90_A0A175A4R3	DNA-deoxyinosine glycosylase	NA
UHGV-0157076_61	eggNOG-mapper	515620.EUBELI_00700	Uracil DNA glycosylase superfamily	NA
UHGV-0157076_61	Pfam	PF03167	Uracil DNA glycosylase superfamily	UDG
UHGV-0157076_61	NCBIFam	TIGR04274.1	DNA-deoxyinosine glycosylase	NA
UHGV-0157076_61	COG	COG3663	G:T/U-mismatch repair DNA glycosylase	NA