UHGV-0157077

Genome information

Genome length 26,403 bps

CDS count 42

Completeness 99.90% (high-quality)

geNomad score 0.9772

Prediction confidence Confident

Genome information
Genome ID	UHGV-0157077
vOTU ID	vOTU-010646
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_472129
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9772
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.63
Jumbo phage	No

Genome content
Genome length	26,403 bps
GC content	40.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	94.26%
Average CDS length	597.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0157077_2	UniRef90	UniRef90_UPI001B3C704F	helix-turn-helix domain-containing protein	NA
UHGV-0157077_2	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0157077_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0157077_3	PHROG	phrog_20388	endolysin	lysis
UHGV-0157077_3	UniRef90	UniRef90_A0A374N1L8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0157077_3	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0157077_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0157077_3	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0157077_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0157077_3	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA
UHGV-0157077_4	PHROG	phrog_443	holin	lysis
UHGV-0157077_4	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-0157077_4	eggNOG-mapper	1235797.C816_04172	Putative lactococcus lactis phage r1t holin	NA
UHGV-0157077_4	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0157077_4	Structural annotation	PF16945	NA	NA
UHGV-0157077_5	PHROG	phrog_1863	NA	unknown function
UHGV-0157077_5	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0157077_5	eggNOG-mapper	1203606.HMPREF1526_02027	NA	NA
UHGV-0157077_7	UniRef90	UniRef90_A0A374N9Y2	NA	NA
UHGV-0157077_7	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0157077_7	Structural annotation	PF10651, PF08931, TIGR02268	NA	NA
UHGV-0157077_8	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0157077_8	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-0157077_8	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0157077_8	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0157077_8	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0157077_8	COG	COG4926	Phage-related protein	NA
UHGV-0157077_8	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0157077_9	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0157077_9	eggNOG-mapper	1246.JMEA01000006_gene51	phage tail	NA
UHGV-0157077_9	COG	COG4722	Phage-related protein YomH	NA
UHGV-0157077_9	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0157077_10	PHROG	phrog_23464	NA	unknown function
UHGV-0157077_10	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0157077_10	COG	COG5283	Phage-related tail protein	NA
UHGV-0157077_10	Structural annotation	COG3941	NA	NA
UHGV-0157077_12	PHROG	phrog_1021	NA	unknown function
UHGV-0157077_12	eggNOG-mapper	1321778.HMPREF1982_03556	NA	NA
UHGV-0157077_13	PHROG	phrog_885	major tail protein	tail
UHGV-0157077_13	UniRef90	UniRef90_Q894J4	Conserved protein	NA
UHGV-0157077_13	eggNOG-mapper	1321814.HMPREF9089_00935	NA	NA
UHGV-0157077_13	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0157077_14	Structural annotation	PF12691	NA	NA
UHGV-0157077_15	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-0157077_15	eggNOG-mapper	642492.Clole_0747	NA	NA
UHGV-0157077_15	Structural annotation	TIGR01725	NA	NA
UHGV-0157077_16	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0157077_16	UniRef90	UniRef90_A0A373XMG4	Phage head-tail adapter protein	NA
UHGV-0157077_16	eggNOG-mapper	1536769.P40081_01090	head-tail adaptor	NA
UHGV-0157077_16	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0157077_16	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0157077_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0157077_17	PHROG	phrog_5223	neck protein	connector
UHGV-0157077_17	UniRef90	UniRef90_A0A174XIL0	NA	NA
UHGV-0157077_17	eggNOG-mapper	411468.CLOSCI_00547	NA	NA
UHGV-0157077_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0157077_18	UniRef90	UniRef90_A0A373XLR3	Phage major capsid protein	NA
UHGV-0157077_18	eggNOG-mapper	411468.CLOSCI_00548	Phage capsid family	NA
UHGV-0157077_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0157077_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0157077_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0157077_19	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0157077_19	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0157077_19	UniRef90	UniRef90_A0A373XPG0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0157077_19	eggNOG-mapper	1396.DJ87_978	Clp protease	NA
UHGV-0157077_19	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0157077_19	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0157077_19	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0157077_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-0157077_20	UniRef90	UniRef90_A0A373XNZ6	Phage portal protein	NA
UHGV-0157077_20	eggNOG-mapper	411468.CLOSCI_00550	Phage portal protein	NA
UHGV-0157077_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0157077_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0157077_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0157077_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0157077_21	UniRef90	UniRef90_A0A373XNY0	Terminase large subunit	NA
UHGV-0157077_21	eggNOG-mapper	411468.CLOSCI_00551	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-0157077_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0157077_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0157077_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0157077_21	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0157077_22	PHROG	phrog_1066	NA	unknown function
UHGV-0157077_22	eggNOG-mapper	931276.Cspa_c10130	NA	NA
UHGV-0157077_23	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0157077_23	UniRef90	UniRef90_A0A373XNZ9	HNH endonuclease	NA
UHGV-0157077_23	eggNOG-mapper	500633.CLOHIR_00362	HNH endonuclease	NA
UHGV-0157077_23	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0157077_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0157077_24	eggNOG-mapper	394503.Ccel_3053	NA	NA
UHGV-0157077_24	Structural annotation	TIGR01636	NA	NA
UHGV-0157077_25	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0157077_25	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0157077_25	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0157077_28	PHROG	phrog_15609	NA	unknown function
UHGV-0157077_28	UniRef90	UniRef90_A0A373SLQ6	NA	NA
UHGV-0157077_28	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-0157077_28	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0157077_29	PHROG	phrog_8470	NA	unknown function
UHGV-0157077_29	UniRef90	UniRef90_UPI001C1DCAAD	PcfJ domain-containing protein	NA
UHGV-0157077_29	eggNOG-mapper	1501230.ET33_02200	PcfJ-like protein	NA
UHGV-0157077_29	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0157077_29	Structural annotation	PF14284	NA	NA
UHGV-0157077_32	UniRef90	UniRef90_A0A2N0ULT9	DNA binding domain, excisionase family	NA
UHGV-0157077_32	eggNOG-mapper	1283300.ATXB01000001_gene1737	DNA excision	NA
UHGV-0157077_32	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0157077_32	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0157077_32	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0157077_32	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0157077_34	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0157077_34	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0157077_34	UniRef90	UniRef90_A0A374N3U7	XRE family transcriptional regulator	NA
UHGV-0157077_34	eggNOG-mapper	866536.Belba_0874	transcriptional regulator	NA
UHGV-0157077_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0157077_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0157077_34	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0157077_35	PHROG	phrog_3773	NA	unknown function
UHGV-0157077_35	Structural annotation	PF01423, MF_00257, NF041667	NA	NA
UHGV-0157077_37	UniRef90	UniRef90_UPI001494A832	helix-turn-helix domain-containing protein	NA
UHGV-0157077_37	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0157077_37	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0157077_38	UniRef90	UniRef90_A0A373XLN2	XRE family transcriptional regulator	NA
UHGV-0157077_38	eggNOG-mapper	1235793.C809_00679	Helix-turn-helix XRE-family like proteins	NA
UHGV-0157077_38	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0157077_38	Structural annotation	PF05339, NF007257, COG3655	NA	NA
UHGV-0157077_39	PHROG	phrog_1914	NA	unknown function
UHGV-0157077_39	UniRef90	UniRef90_A0A374NDM7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0157077_39	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0157077_39	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0157077_39	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0157077_39	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0157077_40	UniRef90	UniRef90_A0A374DTF3	NA	NA
UHGV-0157077_41	KOfam	K14059	int; integrase	NA
UHGV-0157077_41	PHROG	phrog_1	integrase	integration and excision
UHGV-0157077_41	UniRef90	UniRef90_A0A2N0ULT2	Integrase	NA
UHGV-0157077_41	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-0157077_41	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0157077_41	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0157077_41	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0157077_42	PHROG	phrog_11900	NA	unknown function
UHGV-0157077_42	UniRef90	UniRef90_A0A2N0UW35	Fido domain-containing protein	NA
UHGV-0157077_42	eggNOG-mapper	1235799.C818_03247	Fic/DOC family	NA
UHGV-0157077_42	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0157077_42	COG	COG3177	Fic family protein	NA
UHGV-0157077_42	Structural annotation	PF02661, PF20586, TIGR02613, COG3177	NA	NA