UHGV-0157087

Genome information

Genome length 31,232 bps

CDS count 50

Completeness 67.13% (medium-quality)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-0157087
vOTU ID	vOTU-022134
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_450787
BioSample	SAMN05971684
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.13% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.58
Jumbo phage	No

Genome content
Genome length	31,232 bps
GC content	46.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	90.46%
Average CDS length	567.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0157087_1	PHROG	phrog_443	holin	lysis
UHGV-0157087_1	UniRef90	UniRef90_UPI00189FDF74	holin	NA
UHGV-0157087_1	eggNOG-mapper	742733.HMPREF9469_01797	Putative lactococcus lactis phage r1t holin	NA
UHGV-0157087_1	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0157087_1	Structural annotation	PF16945	NA	NA
UHGV-0157087_3	PHROG	phrog_20274	NA	unknown function
UHGV-0157087_3	UniRef90	UniRef90_A0A1C5TNG1	Predicted membrane protein	NA
UHGV-0157087_3	eggNOG-mapper	411902.CLOBOL_05645	NA	NA
UHGV-0157087_3	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-0157087_3	COG	COG4905	NA	NA
UHGV-0157087_3	Structural annotation	PF06541, COG4905	NA	NA
UHGV-0157087_4	PHROG	phrog_1348	tail fiber protein	tail
UHGV-0157087_4	UniRef90	UniRef90_UPI00189CDF3B	acyl carrier protein	NA
UHGV-0157087_4	eggNOG-mapper	411902.CLOBOL_05646	NA	NA
UHGV-0157087_4	Structural annotation	PF14301	NA	NA
UHGV-0157087_5	eggNOG-mapper	411902.CLOBOL_03458	nuclear chromosome segregation	NA
UHGV-0157087_5	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0157087_7	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0157087_7	PHROG	phrog_1	integrase	integration and excision
UHGV-0157087_7	UniRef90	UniRef90_A0A1I0GJS9	Integrase/recombinase XerD	NA
UHGV-0157087_7	eggNOG-mapper	411902.CLOBOL_03456	Belongs to the 'phage' integrase family	NA
UHGV-0157087_7	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0157087_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0157087_7	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0157087_7	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0157087_8	PHROG	phrog_30004	NA	unknown function
UHGV-0157087_8	eggNOG-mapper	1163671.JAGI01000002_gene3043	tail collar domain protein	NA
UHGV-0157087_8	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0157087_9	PHROG	phrog_521	tail protein	tail
UHGV-0157087_9	UniRef90	UniRef90_A0A395YGL1	NA	NA
UHGV-0157087_9	eggNOG-mapper	1345695.CLSA_c22950	NA	NA
UHGV-0157087_9	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0157087_9	COG	COG3778	NA	NA
UHGV-0157087_9	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0157087_10	PHROG	phrog_18608	NA	unknown function
UHGV-0157087_10	UniRef90	UniRef90_A0A0A7S1G0	Tail fiber protein	NA
UHGV-0157087_10	eggNOG-mapper	1345695.CLSA_c22960	NA	NA
UHGV-0157087_10	COG	COG4926	Phage-related protein	NA
UHGV-0157087_11	PHROG	phrog_6	baseplate protein	tail
UHGV-0157087_11	UniRef90	UniRef90_N9YN00	Baseplate_J domain-containing protein	NA
UHGV-0157087_11	eggNOG-mapper	1352230.S6AVU3_9CAUD	Baseplate J-like protein	NA
UHGV-0157087_11	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0157087_11	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0157087_12	PHROG	phrog_120	baseplate protein	tail
UHGV-0157087_12	UniRef90	UniRef90_UPI001D0F4CD7	NA	NA
UHGV-0157087_12	eggNOG-mapper	1163671.JAGI01000002_gene2844	NA	NA
UHGV-0157087_12	Pfam	PF10934	NA	DUF2634
UHGV-0157087_12	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0157087_12	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0157087_13	PHROG	phrog_579	NA	unknown function
UHGV-0157087_13	UniRef90	UniRef90_UPI001D07E2D7	NA	NA
UHGV-0157087_13	eggNOG-mapper	1298920.KI911353_gene536	NA	NA
UHGV-0157087_13	Pfam	PF10844	NA	DUF2577
UHGV-0157087_13	Structural annotation	PF10844	NA	NA
UHGV-0157087_14	PHROG	phrog_400	tail protein	tail
UHGV-0157087_14	UniRef90	UniRef90_A0A3E2UAE4	Hydrolase	NA
UHGV-0157087_14	eggNOG-mapper	1298920.KI911353_gene535	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0157087_14	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0157087_14	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0157087_15	PHROG	phrog_380	endolysin	lysis
UHGV-0157087_15	UniRef90	UniRef90_A0A1C7GB37	LysM domain-containing protein	NA
UHGV-0157087_15	eggNOG-mapper	1298920.KI911353_gene534	Lysin motif	NA
UHGV-0157087_15	Pfam	PF01476	LysM domain	LysM
UHGV-0157087_15	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0157087_15	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-0157087_16	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0157087_16	UniRef90	UniRef90_A0A174KUZ0	Phage tape measure protein	NA
UHGV-0157087_16	eggNOG-mapper	552396.HMPREF0863_00318	tape measure	NA
UHGV-0157087_16	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0157087_16	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0157087_17	PHROG	phrog_17658	NA	unknown function
UHGV-0157087_17	eggNOG-mapper	768710.DesyoDRAFT_1122	NA	NA
UHGV-0157087_17	Structural annotation	PF17787, COG2469	NA	NA
UHGV-0157087_18	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0157087_18	UniRef90	UniRef90_A0A1I0KD57	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0157087_18	eggNOG-mapper	357809.Cphy_2956	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0157087_18	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0157087_18	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0157087_19	PHROG	phrog_365	tail protein	tail
UHGV-0157087_19	UniRef90	UniRef90_A0A0U5HZC8	Phage-like element PBSX protein XkdM	NA
UHGV-0157087_19	eggNOG-mapper	1298920.KI911353_gene531	Phage tail tube protein	NA
UHGV-0157087_19	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0157087_19	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0157087_20	PHROG	phrog_279	tail sheath	tail
UHGV-0157087_20	UniRef90	UniRef90_A0A1C5TG93	Phage tail sheath protein	NA
UHGV-0157087_20	eggNOG-mapper	1298920.KI911353_gene530	Phage tail sheath C-terminal domain	NA
UHGV-0157087_20	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0157087_20	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0157087_20	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0157087_20	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0157087_21	PHROG	phrog_966	NA	unknown function
UHGV-0157087_21	eggNOG-mapper	357809.Cphy_2959	NA	NA
UHGV-0157087_22	PHROG	phrog_525	NA	unknown function
UHGV-0157087_22	UniRef90	UniRef90_A0A174KVR5	NA	NA
UHGV-0157087_22	eggNOG-mapper	696281.Desru_1313	NA	NA
UHGV-0157087_22	Pfam	PF20765	NA	DUF6838
UHGV-0157087_22	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0157087_23	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0157087_23	UniRef90	UniRef90_A0A8B2WXM8	HK97 gp10 family phage protein	NA
UHGV-0157087_23	eggNOG-mapper	1203606.HMPREF1526_00328	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0157087_23	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0157087_23	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0157087_24	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0157087_24	UniRef90	UniRef90_A0A174KZ65	NA	NA
UHGV-0157087_24	eggNOG-mapper	1123511.KB905868_gene179	NA	NA
UHGV-0157087_24	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0157087_25	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0157087_25	UniRef90	UniRef90_A0A227L4U5	Phage gp6-like head-tail connector protein	NA
UHGV-0157087_25	eggNOG-mapper	357809.Cphy_2963	NA	NA
UHGV-0157087_25	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0157087_26	PHROG	phrog_29	major head protein	head and packaging
UHGV-0157087_26	UniRef90	UniRef90_A0A1C7GBR8	Capsid protein	NA
UHGV-0157087_26	eggNOG-mapper	642492.Clole_2756	Phage major capsid protein E	NA
UHGV-0157087_26	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0157087_26	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0157087_27	PHROG	phrog_909	major head protein	head and packaging
UHGV-0157087_27	eggNOG-mapper	642492.Clole_2757	NA	NA
UHGV-0157087_28	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0157087_28	UniRef90	UniRef90_UPI001D064EFC	phage scaffolding protein	NA
UHGV-0157087_28	eggNOG-mapper	1151292.QEW_2434	Phage minor structural protein GP20	NA
UHGV-0157087_28	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0157087_28	Structural annotation	PF06810	NA	NA
UHGV-0157087_29	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0157087_29	UniRef90	UniRef90_N9X1C7	SPP1 gp7 family phage head morphogenesis protein	NA
UHGV-0157087_29	eggNOG-mapper	357809.Cphy_2969	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0157087_29	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0157087_29	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0157087_29	COG	COG2369	NA	NA
UHGV-0157087_29	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0157087_31	PHROG	phrog_64	portal protein	head and packaging
UHGV-0157087_31	UniRef90	UniRef90_A0A1C7G9X6	Phage portal protein	NA
UHGV-0157087_31	eggNOG-mapper	357809.Cphy_2970	Phage portal protein, SPP1 family	NA
UHGV-0157087_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0157087_31	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0157087_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0157087_32	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0157087_32	UniRef90	UniRef90_A0A1C7GFL2	Terminase	NA
UHGV-0157087_32	eggNOG-mapper	357809.Cphy_2971	TIGRFAM Phage	NA
UHGV-0157087_32	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0157087_32	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0157087_32	COG	COG5410	NA	NA
UHGV-0157087_32	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0157087_33	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0157087_33	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0157087_33	UniRef90	UniRef90_A0A1C7GA55	Terminase small subunit	NA
UHGV-0157087_33	eggNOG-mapper	445335.CBN_2993	Terminase small subunit	NA
UHGV-0157087_33	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0157087_33	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0157087_33	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0157087_34	PHROG	phrog_11237	NA	unknown function
UHGV-0157087_34	eggNOG-mapper	1235798.C817_02584	NA	NA
UHGV-0157087_35	PHROG	phrog_25231	NA	unknown function
UHGV-0157087_35	eggNOG-mapper	411902.CLOBOL_05673	NA	NA
UHGV-0157087_35	Structural annotation	PF04936	NA	NA
UHGV-0157087_36	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0157087_36	PHROG	phrog_1	integrase	integration and excision
UHGV-0157087_36	UniRef90	UniRef90_UPI001F2B52E5	tyrosine-type recombinase/integrase	NA
UHGV-0157087_36	eggNOG-mapper	411902.CLOBOL_05674	Belongs to the 'phage' integrase family	NA
UHGV-0157087_36	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0157087_36	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0157087_36	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0157087_36	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0157087_37	eggNOG-mapper	411902.CLOBOL_05675	NA	NA
UHGV-0157087_38	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0157087_38	PHROG	phrog_24920	NA	unknown function
UHGV-0157087_38	UniRef90	UniRef90_A8S0H4	LexA_DNA_bind domain-containing protein	NA
UHGV-0157087_38	eggNOG-mapper	411902.CLOBOL_05676	LexA DNA binding domain	NA
UHGV-0157087_38	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0157087_38	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0157087_38	Structural annotation	PF01726, MF_00732, TIGR00738, COG1959	NA	NA
UHGV-0157087_40	KOfam	K07728	K07728; putative transcriptional regulator	NA
UHGV-0157087_40	UniRef90	UniRef90_A0A0E2H8K6	HTH cro/C1-type domain-containing protein	NA
UHGV-0157087_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0157087_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0157087_40	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0157087_41	PHROG	phrog_918	NA	unknown function
UHGV-0157087_41	UniRef90	UniRef90_UPI00156D5D02	NA	NA
UHGV-0157087_41	eggNOG-mapper	411902.CLOBOL_05677	NA	NA
UHGV-0157087_41	Pfam	PF19791	NA	DUF6275
UHGV-0157087_41	Structural annotation	PF19791	NA	NA
UHGV-0157087_42	eggNOG-mapper	411902.CLOBOL_05678	NA	NA
UHGV-0157087_48	eggNOG-mapper	1280689.AUJC01000001_gene2326	GHKL domain	NA
UHGV-0157087_48	COG	COG3290	Sensor histidine kinase DipB regulating citrate/malate metabolism	NA
UHGV-0157087_50	KOfam	K07813	agrB; accessory gene regulator B	NA
UHGV-0157087_50	PHROG	phrog_10353	NA	unknown function
UHGV-0157087_50	UniRef90	UniRef90_A0A1B8RQ72	Accessory regulator AgrB	NA
UHGV-0157087_50	eggNOG-mapper	1280689.AUJC01000001_gene2328	Accessory gene regulator	NA
UHGV-0157087_50	Pfam	PF04647	Accessory gene regulator B	AgrB
UHGV-0157087_50	COG	COG4512	Accessory gene regulator protein AgrB	NA
UHGV-0157087_50	Structural annotation	PF04647, MF_00784, NF002210, COG4512	NA	NA