UHGV-0157094

Genome information

Genome length 35,599 bps

CDS count 56

Completeness 98.61% (high-quality)

geNomad score 0.9722

Prediction confidence Confident

Genome information
Genome ID	UHGV-0157094
vOTU ID	vOTU-076194
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_459623
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.61% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9722
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.69
Jumbo phage	No

Genome content
Genome length	35,599 bps
GC content	44.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	91.08%
Average CDS length	582.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0157094_1	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0157094_1	UniRef90	UniRef90_A0A350U004	Terminase large subunit	NA
UHGV-0157094_1	eggNOG-mapper	626523.GCWU000342_01028	Phage terminase-like protein large subunit	NA
UHGV-0157094_1	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0157094_1	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0157094_1	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0157094_1	Structural annotation	PF03354, PF20441, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0157094_2	PHROG	phrog_1066	NA	unknown function
UHGV-0157094_2	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-0157094_2	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0157094_3	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0157094_3	UniRef90	UniRef90_A0A350U006	HNH domain-containing protein	NA
UHGV-0157094_3	eggNOG-mapper	318464.IO99_13775	HNH nucleases	NA
UHGV-0157094_3	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0157094_3	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0157094_6	UniRef90	UniRef90_A0A350U007	DNA-binding protein	NA
UHGV-0157094_6	eggNOG-mapper	1280673.AUJJ01000020_gene1343	Nucleotidyltransferase domain	NA
UHGV-0157094_6	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0157094_6	COG	COG1669	Predicted nucleotidyltransferase MJ0435	NA
UHGV-0157094_6	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0157094_7	PHROG	phrog_32650	NA	unknown function
UHGV-0157094_7	eggNOG-mapper	518637.EUBIFOR_00095	NA	NA
UHGV-0157094_8	PHROG	phrog_30064	NA	unknown function
UHGV-0157094_8	UniRef90	UniRef90_A0A1C6KMD7	37-kD nucleoid-associated bacterial protein	NA
UHGV-0157094_8	eggNOG-mapper	518637.EUBIFOR_00096	NA	NA
UHGV-0157094_9	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0157094_9	UniRef90	UniRef90_A0A415FLQ4	NA	NA
UHGV-0157094_9	eggNOG-mapper	1123075.AUDP01000020_gene1515	sigma factor activity	NA
UHGV-0157094_9	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0157094_9	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0157094_10	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0157094_10	UniRef90	UniRef90_A0A1I0VIB3	MazG nucleotide pyrophosphohydrolase domain-containing protein	NA
UHGV-0157094_10	Structural annotation	PF11998, COG5420	NA	NA
UHGV-0157094_11	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0157094_11	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0157094_11	UniRef90	UniRef90_R5AC34	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0157094_11	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0157094_11	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0157094_11	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0157094_11	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0157094_11	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0157094_14	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0157094_14	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0157094_14	UniRef90	UniRef90_A0A353J4N2	SF4 helicase domain-containing protein	NA
UHGV-0157094_14	eggNOG-mapper	476272.RUMHYD_02834	NA	NA
UHGV-0157094_14	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0157094_14	Pfam	PF13481	AAA domain	AAA_25
UHGV-0157094_14	COG	COG0305	Replicative DNA helicase	NA
UHGV-0157094_14	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0157094_15	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0157094_15	UniRef90	UniRef90_A0A1M5ZHR8	TF_AP-2 domain-containing protein	NA
UHGV-0157094_15	eggNOG-mapper	1121912.AUHD01000018_gene3472	DnaD domain protein	NA
UHGV-0157094_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0157094_15	Structural annotation	PF07106, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0157094_16	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0157094_16	UniRef90	UniRef90_A0A6N2R581	ERCC4 domain-containing protein	NA
UHGV-0157094_16	eggNOG-mapper	476272.RUMHYD_01740	ERCC4 domain	NA
UHGV-0157094_16	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0157094_16	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0157094_16	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0157094_17	PHROG	phrog_18107	NA	unknown function
UHGV-0157094_17	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0157094_17	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0157094_17	Structural annotation	PF05037	NA	NA
UHGV-0157094_18	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0157094_18	UniRef90	UniRef90_A0A847VZU9	AAA family ATPase	NA
UHGV-0157094_18	eggNOG-mapper	1415774.U728_1119	AAA domain	NA
UHGV-0157094_18	Pfam	PF13479	AAA domain	AAA_24
UHGV-0157094_18	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0157094_23	Structural annotation	PF06257, COG4466	NA	NA
UHGV-0157094_24	UniRef90	UniRef90_A0A416KCJ3	DNA-binding protein	NA
UHGV-0157094_24	eggNOG-mapper	246199.CUS_5199	Helix-turn-helix domain	NA
UHGV-0157094_24	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0157094_24	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0157094_28	KOfam	K03627	MBF1; putative transcription factor	NA
UHGV-0157094_28	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0157094_28	UniRef90	UniRef90_A0A350TVK0	XRE family transcriptional regulator	NA
UHGV-0157094_28	eggNOG-mapper	936375.HMPREF1152_1045	Helix-turn-helix XRE-family like proteins	NA
UHGV-0157094_28	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0157094_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0157094_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0157094_28	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0157094_29	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0157094_29	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0157094_29	UniRef90	UniRef90_A0A350TVK1	XRE family transcriptional regulator	NA
UHGV-0157094_29	eggNOG-mapper	411490.ANACAC_00815	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0157094_29	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0157094_29	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0157094_29	NCBIFam	TIGR00498.1	transcriptional repressor LexA	NA
UHGV-0157094_29	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0157094_29	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0157094_30	eggNOG-mapper	1235802.C823_04880	NA	NA
UHGV-0157094_31	KOfam	K07493	K07493; putative transposase	NA
UHGV-0157094_31	PHROG	phrog_2331	transposase	integration and excision
UHGV-0157094_31	UniRef90	UniRef90_R6PUP3	Mutator family transposase	NA
UHGV-0157094_31	eggNOG-mapper	1291050.JAGE01000001_gene1623	PFAM Transposase, Mutator	NA
UHGV-0157094_31	Pfam	PF00872	Transposase, Mutator family	Transposase_mut
UHGV-0157094_31	NCBIFam	NF033543.1	IS256 family transposase	NA
UHGV-0157094_31	COG	COG3328	Transposase (or an inactivated derivative)	NA
UHGV-0157094_31	Structural annotation	PF00872, NF033543, COG3328	NA	NA
UHGV-0157094_32	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0157094_32	UniRef90	UniRef90_A0A0X8VCT6	NlpC/P60 domain-containing protein	NA
UHGV-0157094_32	eggNOG-mapper	411902.CLOBOL_04837	Phage lysozyme	NA
UHGV-0157094_32	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0157094_32	Structural annotation	PF00877, PF01471, NF033743, COG0791	NA	NA
UHGV-0157094_33	PHROG	phrog_36029	NA	unknown function
UHGV-0157094_33	UniRef90	UniRef90_A0A318KD97	Superfamily 6 holin (LLH)	NA
UHGV-0157094_33	eggNOG-mapper	411468.CLOSCI_01511	NA	NA
UHGV-0157094_34	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0157094_34	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0157094_34	UniRef90	UniRef90_A0A7I8D1H8	Putative antirepressor - phage associated	NA
UHGV-0157094_34	eggNOG-mapper	1232449.BAHV02000010_gene2739	BRO family, N-terminal domain	NA
UHGV-0157094_34	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0157094_34	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0157094_34	COG	COG3617	Prophage antirepressor	NA
UHGV-0157094_34	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0157094_36	PHROG	phrog_13890	NA	unknown function
UHGV-0157094_36	UniRef90	UniRef90_A0A3A8Z2N2	ABC transporter ATP-binding protein	NA
UHGV-0157094_36	eggNOG-mapper	1507.HMPREF0262_00298	NA	NA
UHGV-0157094_37	PHROG	phrog_13256	NA	unknown function
UHGV-0157094_37	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0157094_39	PHROG	phrog_937	hemolysin	other
UHGV-0157094_39	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0157094_40	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0157094_40	UniRef90	UniRef90_A0A396NSB6	Prophage_tail domain-containing protein	NA
UHGV-0157094_40	eggNOG-mapper	1443125.Z962_07985	Prophage endopeptidase tail	NA
UHGV-0157094_40	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0157094_40	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0157094_40	COG	COG4926	Phage-related protein	NA
UHGV-0157094_40	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0157094_41	PHROG	phrog_2310	NA	unknown function
UHGV-0157094_41	eggNOG-mapper	1391647.AVSV01000022_gene2576	NA	NA
UHGV-0157094_42	UniRef90	UniRef90_R5ANH3	Putative flagellar basal-body rod protein	NA
UHGV-0157094_43	PHROG	phrog_3639	minor tail protein	tail
UHGV-0157094_43	UniRef90	UniRef90_A0A396NMY3	NA	NA
UHGV-0157094_43	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0157094_43	COG	COG5434	Polygalacturonase	NA
UHGV-0157094_43	Structural annotation	PF10651, PF05475, NF033675, COG4935	NA	NA
UHGV-0157094_44	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0157094_44	UniRef90	UniRef90_A0A350TW29	Phage tail protein	NA
UHGV-0157094_44	eggNOG-mapper	545697.HMPREF0216_00910	tail component	NA
UHGV-0157094_44	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0157094_44	COG	COG4722	Phage-related protein YomH	NA
UHGV-0157094_44	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0157094_45	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0157094_45	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0157094_45	UniRef90	UniRef90_A0A350TW28	Phage tail tape measure protein	NA
UHGV-0157094_45	eggNOG-mapper	742740.HMPREF9474_01203	Phage tail tape measure protein, TP901 family	NA
UHGV-0157094_45	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0157094_45	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0157094_45	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0157094_45	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0157094_46	eggNOG-mapper	1121423.JONT01000041_gene954	NA	NA
UHGV-0157094_47	eggNOG-mapper	1280689.AUJC01000007_gene3310	NA	NA
UHGV-0157094_47	Structural annotation	PF17388	NA	NA
UHGV-0157094_48	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0157094_48	eggNOG-mapper	755731.Clo1100_0552	NA	NA
UHGV-0157094_48	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0157094_49	PHROG	phrog_78	tail terminator	connector
UHGV-0157094_49	UniRef90	UniRef90_E7GJW4	Prophage pi2 protein 38	NA
UHGV-0157094_49	eggNOG-mapper	476272.RUMHYD_01476	COG NOG18352 non supervised orthologous group	NA
UHGV-0157094_49	Structural annotation	PF20765	NA	NA
UHGV-0157094_50	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0157094_50	UniRef90	UniRef90_A0A7V7BBM4	HK97 gp10 family phage protein	NA
UHGV-0157094_50	eggNOG-mapper	1123314.AUIO01000016_gene844	NA	NA
UHGV-0157094_50	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0157094_50	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0157094_51	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0157094_51	UniRef90	UniRef90_UPI000BF0079F	phage head closure protein	NA
UHGV-0157094_51	eggNOG-mapper	1033738.CAEP01000018_gene3675	head-tail adaptor	NA
UHGV-0157094_51	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0157094_51	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0157094_52	PHROG	phrog_5223	neck protein	connector
UHGV-0157094_52	UniRef90	UniRef90_B6W9Y5	Putative phage DNA packaging protein	NA
UHGV-0157094_52	eggNOG-mapper	561177.ANHYDRO_01411	NA	NA
UHGV-0157094_52	Structural annotation	TIGR01560	NA	NA
UHGV-0157094_53	PHROG	phrog_10	major head protein	head and packaging
UHGV-0157094_53	UniRef90	UniRef90_A0A350TW17	Phage major capsid protein (Fragment)	NA
UHGV-0157094_53	eggNOG-mapper	411470.RUMGNA_02065	NA	NA
UHGV-0157094_53	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0157094_53	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0157094_53	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0157094_54	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0157094_54	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0157094_54	UniRef90	UniRef90_A0A350TW16	Peptidase (Fragment)	NA
UHGV-0157094_54	eggNOG-mapper	1033738.CAEP01000167_gene3589	Serine dehydrogenase proteinase	NA
UHGV-0157094_54	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0157094_54	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0157094_54	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0157094_55	PHROG	phrog_12	portal protein	head and packaging
UHGV-0157094_55	UniRef90	UniRef90_A0A1T4XJH4	Phage portal protein, HK97 family	NA
UHGV-0157094_55	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-0157094_55	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0157094_55	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0157094_55	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0157094_56	eggNOG-mapper	1235797.C816_00323	ABC-type Fe3 transport system, periplasmic component	NA
UHGV-0157094_56	COG	COG1840	ABC-type Fe3+ transport system, periplasmic component	NA