UHGV-0157131

Genome information

Genome length 42,387 bps

CDS count 62

Completeness 100.00% (complete)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-0157131
vOTU ID	vOTU-046236
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_445289
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.58
Jumbo phage	No

Genome content
Genome length	42,387 bps
GC content	54.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	92.78%
Average CDS length	636.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0157131_2	eggNOG-mapper	445972.ANACOL_01149	NA	NA
UHGV-0157131_3	COG	COG1395	Predicted transcriptional regulator	NA
UHGV-0157131_3	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-0157131_4	PHROG	phrog_524	anti-repressor Ant	transcription regulation
UHGV-0157131_4	UniRef90	UniRef90_UPI001B389E5A	ORF6C domain-containing protein	NA
UHGV-0157131_4	eggNOG-mapper	397290.C810_01339	P22_AR N-terminal domain	NA
UHGV-0157131_4	Pfam	PF10547	P22_AR N-terminal domain	P22_AR_N
UHGV-0157131_4	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0157131_4	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0157131_4	Structural annotation	PF10552, PF10547, COG3617	NA	NA
UHGV-0157131_5	PHROG	phrog_18248	transcriptional regulator	transcription regulation
UHGV-0157131_5	UniRef90	UniRef90_A0A847W1V2	Helix-turn-helix transcriptional regulator	NA
UHGV-0157131_5	eggNOG-mapper	1308866.J416_09304	Helix-turn-helix XRE-family like proteins	NA
UHGV-0157131_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0157131_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0157131_5	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0157131_7	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0157131_7	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0157131_7	UniRef90	UniRef90_A0A329TTX5	XRE family transcriptional regulator	NA
UHGV-0157131_7	eggNOG-mapper	1504823.CCMM01000008_gene1079	sequence-specific DNA binding	NA
UHGV-0157131_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0157131_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0157131_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0157131_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0157131_8	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0157131_8	UniRef90	UniRef90_A0A1Y3ZRE4	HTH cro/C1-type domain-containing protein	NA
UHGV-0157131_8	eggNOG-mapper	1235798.C817_00620	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0157131_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0157131_8	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0157131_8	Structural annotation	PF12844, NF007257, COG1396	NA	NA
UHGV-0157131_11	KOfam	K14059	int; integrase	NA
UHGV-0157131_11	PHROG	phrog_1	integrase	integration and excision
UHGV-0157131_11	UniRef90	UniRef90_A0A8J6JEJ8	Site-specific integrase	NA
UHGV-0157131_11	eggNOG-mapper	742738.HMPREF9460_01344	Phage integrase family	NA
UHGV-0157131_11	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0157131_11	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0157131_11	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0157131_12	PHROG	phrog_19458	primase	DNA, RNA and nucleotide metabolism
UHGV-0157131_12	UniRef90	UniRef90_A0A1V5KAU2	DarA_C domain-containing protein	NA
UHGV-0157131_12	eggNOG-mapper	1226322.HMPREF1545_03514	NA	NA
UHGV-0157131_12	Pfam	PF12083	NA	DUF3560
UHGV-0157131_12	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-0157131_14	PHROG	phrog_10415	NA	unknown function
UHGV-0157131_14	UniRef90	UniRef90_UPI00068FC51E	J domain-containing protein	NA
UHGV-0157131_14	eggNOG-mapper	1519439.JPJG01000053_gene1369	DnaJ molecular chaperone homology domain	NA
UHGV-0157131_14	Pfam	PF00226	DnaJ domain	DnaJ
UHGV-0157131_14	Pfam	PF18847	Large polyvalent protein associated domain 29	LPD29
UHGV-0157131_14	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0157131_15	UniRef90	UniRef90_A0A1Y3R5J8	RHH_1 domain-containing protein	NA
UHGV-0157131_15	eggNOG-mapper	1160721.RBI_I00206	NA	NA
UHGV-0157131_15	Structural annotation	PF10723	NA	NA
UHGV-0157131_16	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0157131_16	UniRef90	UniRef90_A0A316L5V7	AP2/ERF domain-containing protein	NA
UHGV-0157131_16	eggNOG-mapper	879308.HMPREF9130_0377	NA	NA
UHGV-0157131_16	Pfam	PF00847	AP2 domain	AP2
UHGV-0157131_16	Structural annotation	PF18337, PF00847	NA	NA
UHGV-0157131_17	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0157131_17	UniRef90	UniRef90_A0A6N3FXW7	Helix-turn-helix	NA
UHGV-0157131_17	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0157131_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0157131_17	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0157131_17	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0157131_18	AcrCatalog	cluster_11486	NA	NA
UHGV-0157131_19	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0157131_19	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0157131_19	UniRef90	UniRef90_A0A354J789	Terminase small subunit	NA
UHGV-0157131_19	eggNOG-mapper	509191.AEDB02000023_gene3615	Terminase small subunit	NA
UHGV-0157131_19	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0157131_19	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0157131_19	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0157131_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0157131_20	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0157131_20	UniRef90	UniRef90_UPI0019677368	phage terminase large subunit	NA
UHGV-0157131_20	eggNOG-mapper	665956.HMPREF1032_03884	Terminase-like family	NA
UHGV-0157131_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0157131_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0157131_20	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0157131_21	PHROG	phrog_156	portal protein	head and packaging
UHGV-0157131_21	Structural annotation	PF12236, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0157131_23	Structural annotation	COG5471	NA	NA
UHGV-0157131_24	PHROG	phrog_371	major head protein	head and packaging
UHGV-0157131_24	UniRef90	UniRef90_R7FUR2	Mu-like prophage major head subunit gpt-like protein	NA
UHGV-0157131_24	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0157131_24	Structural annotation	PF19774, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0157131_25	PHROG	phrog_13046	NA	unknown function
UHGV-0157131_25	Structural annotation	PF20387	NA	NA
UHGV-0157131_26	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0157131_26	eggNOG-mapper	1232449.BAHV02000016_gene1816	NA	NA
UHGV-0157131_26	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0157131_28	PHROG	phrog_24451	NA	unknown function
UHGV-0157131_28	eggNOG-mapper	1408437.JNJN01000040_gene189	NA	NA
UHGV-0157131_29	UniRef90	UniRef90_A0A1Y3Z0U4	XkdX family protein (Fragment)	NA
UHGV-0157131_29	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0157131_30	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0157131_30	PHROG	phrog_435	endolysin	lysis
UHGV-0157131_30	UniRef90	UniRef90_A0A1Y4RIN0	MurNAc-LAA domain-containing protein	NA
UHGV-0157131_30	eggNOG-mapper	1121344.JHZO01000003_gene744	Ami_3	NA
UHGV-0157131_30	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0157131_30	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0157131_30	Structural annotation	PF09992, COG4632, COG5632	NA	NA
UHGV-0157131_32	UniRef90	UniRef90_U2AS96	MuF_C domain-containing protein	NA
UHGV-0157131_32	eggNOG-mapper	693746.OBV_01590	NA	NA
UHGV-0157131_32	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0157131_33	PHROG	phrog_1129	holin	lysis
UHGV-0157131_33	UniRef90	UniRef90_UPI0002E32382	phage holin family protein	NA
UHGV-0157131_33	eggNOG-mapper	1007096.BAGW01000036_gene2663	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0157131_33	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0157131_33	Structural annotation	PF06946	NA	NA
UHGV-0157131_36	UniRef90	UniRef90_A0A1Y3RJS2	Sigma70_r4_2 domain-containing protein	NA
UHGV-0157131_39	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0157131_39	UniRef90	UniRef90_A0A174RNL1	RNA polymerase sigma factor SigS	NA
UHGV-0157131_39	eggNOG-mapper	506534.Rhein_1610	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes	NA
UHGV-0157131_39	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0157131_39	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0157131_39	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0157131_39	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0157131_39	Structural annotation	PF04542, PF08281, MF_00962, NF006158, COG1191	NA	NA
UHGV-0157131_40	PHROG	phrog_3301	pyrophosphatase	other
UHGV-0157131_40	eggNOG-mapper	411459.RUMOBE_01042	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0157131_40	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0157131_40	Structural annotation	COG1694	NA	NA
UHGV-0157131_42	UniRef90	UniRef90_UPI00082EBC63	Lar family restriction alleviation protein	NA
UHGV-0157131_47	UniRef90	UniRef90_UPI00187349CE	NA	NA
UHGV-0157131_48	UniRef90	UniRef90_A0A315Y4I9	Lar family restriction alleviation protein	NA
UHGV-0157131_48	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA
UHGV-0157131_52	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0157131_52	Structural annotation	PF13392, PF20987	NA	NA
UHGV-0157131_53	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0157131_53	UniRef90	UniRef90_A0A533R9G2	Holliday junction endonuclease	NA
UHGV-0157131_53	eggNOG-mapper	1121438.JNJA01000001_gene2624	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-0157131_53	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-0157131_53	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-0157131_54	PHROG	phrog_9804	NA	unknown function
UHGV-0157131_54	UniRef90	UniRef90_UPI0018976F94	replicative helicase loader/inhibitor	NA
UHGV-0157131_54	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0157131_54	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0157131_54	Structural annotation	PF11417	NA	NA
UHGV-0157131_55	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0157131_55	eggNOG-mapper	498761.HM1_0053	HNH endonuclease	NA
UHGV-0157131_55	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0157131_56	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0157131_56	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0157131_56	UniRef90	UniRef90_A0A8J7VJS5	Single-stranded DNA-binding protein	NA
UHGV-0157131_56	eggNOG-mapper	411467.BACCAP_02389	Single-strand binding protein family	NA
UHGV-0157131_56	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0157131_56	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0157131_56	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0157131_56	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0157131_56	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0157131_57	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0157131_57	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0157131_57	UniRef90	UniRef90_UPI001D0251E4	MBL fold metallo-hydrolase	NA
UHGV-0157131_57	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0157131_57	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0157131_57	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0157131_57	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0157131_58	PHROG	phrog_3657	NA	unknown function
UHGV-0157131_58	UniRef90	UniRef90_UPI001DC4E782	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0157131_58	eggNOG-mapper	411461.DORFOR_00020	NA	NA
UHGV-0157131_59	PHROG	phrog_674	NA	unknown function
UHGV-0157131_59	UniRef90	UniRef90_A0A7X9AE52	NA	NA
UHGV-0157131_59	eggNOG-mapper	665956.HMPREF1032_03103	NA	NA
UHGV-0157131_59	Pfam	PF07083	NA	DUF1351
UHGV-0157131_59	Structural annotation	PF07083	NA	NA
UHGV-0157131_61	PHROG	phrog_4433	NA	unknown function
UHGV-0157131_61	eggNOG-mapper	33035.JPJF01000122_gene2458	regulation of DNA-templated transcription, elongation	NA
UHGV-0157131_61	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0157131_61	Structural annotation	NF007410	NA	NA