UHGV-0157153

Genome information

Genome length 27,027 bps

CDS count 43

Completeness 63.80% (medium-quality)

geNomad score 0.9599

Prediction confidence Confident

Genome information
Genome ID	UHGV-0157153
vOTU ID	vOTU-021878
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_449888
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.80% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9599
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.87
Jumbo phage	No

Genome content
Genome length	27,027 bps
GC content	57.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	89.92%
Average CDS length	569.65 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0157153_1	KOfam	K21297	ctcQ; flavin reductase (NADH) [EC:1.5.1.36]	NA
UHGV-0157153_1	UniRef90	UniRef90_E5YA12	Flavin_Reduct domain-containing protein	NA
UHGV-0157153_1	eggNOG-mapper	563192.HMPREF0179_03030	PFAM flavin reductase domain protein FMN-binding	NA
UHGV-0157153_1	Pfam	PF01613	Flavin reductase like domain	Flavin_Reduct
UHGV-0157153_1	COG	COG1853	FMN reductase RutF, DIM6/NTAB family	NA
UHGV-0157153_2	UniRef90	UniRef90_F6B3A8	Abi_C domain-containing protein	NA
UHGV-0157153_2	eggNOG-mapper	868595.Desca_2304	Abortive infection C-terminus	NA
UHGV-0157153_2	PADLOC	AbiJ	AbiJ	Abi
UHGV-0157153_2	Pfam	PF14355	Abortive infection C-terminus	Abi_C
UHGV-0157153_3	UniRef90	UniRef90_UPI001D0ADCD9	Rha family transcriptional regulator	NA
UHGV-0157153_3	eggNOG-mapper	563192.HMPREF0179_00187	NA	NA
UHGV-0157153_4	KOfam	K14059	int; integrase	NA
UHGV-0157153_4	PHROG	phrog_1	integrase	integration and excision
UHGV-0157153_4	UniRef90	UniRef90_A0A7X7AGP5	Tyrosine-type recombinase/integrase	NA
UHGV-0157153_4	eggNOG-mapper	596151.DesfrDRAFT_0833	Belongs to the 'phage' integrase family	NA
UHGV-0157153_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0157153_4	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0157153_4	Structural annotation	PF00589, PF13495, PF02920, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-0157153_7	PHROG	phrog_15937	NA	unknown function
UHGV-0157153_8	PHROG	phrog_3193	NA	unknown function
UHGV-0157153_8	UniRef90	UniRef90_A0A414RJJ7	ASCH domain-containing protein	NA
UHGV-0157153_8	eggNOG-mapper	665942.HMPREF1022_02885	NA	NA
UHGV-0157153_10	UniRef90	UniRef90_UPI001EDAFAA2	phage N-6-adenine-methyltransferase	NA
UHGV-0157153_10	eggNOG-mapper	563192.HMPREF0179_03455	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0157153_12	Structural annotation	PF21744	NA	NA
UHGV-0157153_16	UniRef90	UniRef90_UPI00054E6D0E	helix-turn-helix domain-containing protein	NA
UHGV-0157153_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0157153_17	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0157153_17	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0157153_17	UniRef90	UniRef90_UPI00068AAAF0	DNA cytosine methyltransferase	NA
UHGV-0157153_17	eggNOG-mapper	1408428.JNJP01000034_gene1488	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0157153_17	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0157153_17	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0157153_17	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0157153_17	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0157153_18	PHROG	phrog_7839	NA	unknown function
UHGV-0157153_18	eggNOG-mapper	1415775.U729_3168	NA	NA
UHGV-0157153_19	UniRef90	UniRef90_A0A3C0CBA0	Ribonucleoside-triphosphate reductase	NA
UHGV-0157153_19	eggNOG-mapper	1408428.JNJP01000034_gene1490	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0157153_19	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0157153_19	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0157153_20	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0157153_20	UniRef90	UniRef90_UPI001D09F98A	helix-turn-helix domain-containing protein	NA
UHGV-0157153_20	eggNOG-mapper	563192.HMPREF0179_01754	DnaD domain protein	NA
UHGV-0157153_20	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0157153_22	UniRef90	UniRef90_UPI001C3B405E	MerR family transcriptional regulator	NA
UHGV-0157153_22	eggNOG-mapper	1408428.JNJP01000034_gene1493	NA	NA
UHGV-0157153_23	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0157153_23	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0157153_23	UniRef90	UniRef90_UPI00049683FA	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0157153_23	eggNOG-mapper	1408428.JNJP01000034_gene1494	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0157153_23	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0157153_23	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0157153_23	Structural annotation	PF15919, TIGR04563, COG1598, COG4710	NA	NA
UHGV-0157153_24	KOfam	K21498	higA-1; antitoxin HigA-1	NA
UHGV-0157153_24	PHROG	phrog_1381	plasmid antitoxin with HTH domain	moron, auxiliary metabolic gene and host takeover
UHGV-0157153_24	UniRef90	UniRef90_G2H551	Addiction module antidote protein, HigA family	NA
UHGV-0157153_24	eggNOG-mapper	883.DvMF_1669	TIGRFAM Addiction module antidote protein, HigA	NA
UHGV-0157153_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0157153_24	NCBIFam	TIGR02607.1	HigA family addiction module antitoxin	NA
UHGV-0157153_24	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0157153_25	KOfam	K07334	higB-1; toxin HigB-1	NA
UHGV-0157153_25	PHROG	phrog_3066	toxin of TA system	moron, auxiliary metabolic gene and host takeover
UHGV-0157153_25	UniRef90	UniRef90_B8DLX0	Plasmid maintenance system killer	NA
UHGV-0157153_25	eggNOG-mapper	883.DvMF_1668	RelE-like toxin of type II toxin-antitoxin system HigB	NA
UHGV-0157153_25	Pfam	PF05015	RelE-like toxin of type II toxin-antitoxin system HigB	HigB-like_toxin
UHGV-0157153_25	COG	COG3549	Plasmid maintenance system killer protein	NA
UHGV-0157153_25	Structural annotation	PF05015, TIGR00053, COG3549	NA	NA
UHGV-0157153_26	PHROG	phrog_315	endolysin	lysis
UHGV-0157153_26	UniRef90	UniRef90_A0A6H3F890	PG_binding_3 domain-containing protein	NA
UHGV-0157153_26	eggNOG-mapper	1408428.JNJP01000034_gene1495	Predicted Peptidoglycan domain	NA
UHGV-0157153_26	Pfam	PF05838	Glycosyl hydrolase 108	Glyco_hydro_108
UHGV-0157153_26	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-0157153_26	COG	COG3926	Lysozyme family protein	NA
UHGV-0157153_26	Structural annotation	PF05838, PF09374, NF040573, COG3926	NA	NA
UHGV-0157153_27	UniRef90	UniRef90_UPI0004986967	NA	NA
UHGV-0157153_28	UniRef90	UniRef90_UPI00068B9FB8	Rz1-like lysis system protein LysC	NA
UHGV-0157153_28	eggNOG-mapper	1408428.JNJP01000012_gene1155	NA	NA
UHGV-0157153_29	UniRef90	UniRef90_UPI001EDB5C6D	phage holin family protein	NA
UHGV-0157153_29	eggNOG-mapper	1408428.JNJP01000012_gene1156	Bacteriophage holin family	NA
UHGV-0157153_29	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0157153_29	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0157153_29	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0157153_30	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0157153_30	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0157153_30	UniRef90	UniRef90_UPI000494DBF8	HNH endonuclease	NA
UHGV-0157153_30	eggNOG-mapper	1408428.JNJP01000034_gene1499	HNH endonuclease	NA
UHGV-0157153_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0157153_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0157153_30	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0157153_31	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0157153_31	UniRef90	UniRef90_UPI0004956756	phage terminase small subunit P27 family	NA
UHGV-0157153_31	eggNOG-mapper	1408428.JNJP01000034_gene1500	Phage terminase, small subunit	NA
UHGV-0157153_31	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0157153_31	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0157153_31	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0157153_31	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0157153_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0157153_32	UniRef90	UniRef90_UPI001EDA5D5E	terminase large subunit	NA
UHGV-0157153_32	eggNOG-mapper	1408428.JNJP01000034_gene1501	Phage Terminase	NA
UHGV-0157153_32	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0157153_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0157153_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0157153_32	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0157153_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-0157153_33	UniRef90	UniRef90_UPI001D0A4C6A	phage portal protein	NA
UHGV-0157153_33	eggNOG-mapper	882.DVU_1502	portal protein, HK97 family	NA
UHGV-0157153_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0157153_33	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0157153_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0157153_33	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0157153_34	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0157153_34	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0157153_34	UniRef90	UniRef90_UPI001EDC79DF	Clp protease ClpP	NA
UHGV-0157153_34	eggNOG-mapper	882.DVU_1501	Serine dehydrogenase proteinase	NA
UHGV-0157153_34	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0157153_34	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0157153_34	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0157153_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-0157153_35	UniRef90	UniRef90_UPI001D0B7667	phage major capsid protein	NA
UHGV-0157153_35	eggNOG-mapper	882.DVU_1500	Phage capsid family	NA
UHGV-0157153_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0157153_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0157153_35	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0157153_35	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0157153_36	PHROG	phrog_442	head-tail adaptor	connector
UHGV-0157153_36	UniRef90	UniRef90_UPI001EDBC708	phage gp6-like head-tail connector protein	NA
UHGV-0157153_36	eggNOG-mapper	883.DvMF_1653	Phage gp6-like head-tail connector protein	NA
UHGV-0157153_36	NCBIFam	TIGR02215.1	phage conserved hypothetical protein, phiE125 gp8 family	NA
UHGV-0157153_36	Structural annotation	PF05135, TIGR02215	NA	NA
UHGV-0157153_37	PHROG	phrog_25	head closure Hc1	connector
UHGV-0157153_37	UniRef90	UniRef90_G1V603	Phage head-tail adaptor	NA
UHGV-0157153_37	eggNOG-mapper	1408428.JNJP01000182_gene2411	Phage head-tail joining protein	NA
UHGV-0157153_37	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0157153_37	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0157153_37	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0157153_37	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0157153_38	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0157153_38	UniRef90	UniRef90_UPI00068D8489	HK97 gp10 family phage protein	NA
UHGV-0157153_38	eggNOG-mapper	1408428.JNJP01000189_gene796	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0157153_38	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0157153_38	Structural annotation	PF17395, COG5005	NA	NA
UHGV-0157153_39	PHROG	phrog_347	tail terminator	connector
UHGV-0157153_39	UniRef90	UniRef90_UPI00068A3FD3	NA	NA
UHGV-0157153_39	eggNOG-mapper	1408428.JNJP01000189_gene797	NA	NA
UHGV-0157153_39	Pfam	PF11367	NA	DUF3168
UHGV-0157153_39	Structural annotation	PF11367	NA	NA
UHGV-0157153_40	PHROG	phrog_290	minor tail protein	tail
UHGV-0157153_40	UniRef90	UniRef90_UPI001D05F35A	phage tail tube protein	NA
UHGV-0157153_40	eggNOG-mapper	1408428.JNJP01000150_gene392	NA	NA
UHGV-0157153_40	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-0157153_40	Structural annotation	PF18906, TIGR02241, TIGR02126, COG5437, COG3498	NA	NA
UHGV-0157153_41	Structural annotation	PF20336	NA	NA
UHGV-0157153_42	PHROG	phrog_680	tail length tape measure protein	tail
UHGV-0157153_42	UniRef90	UniRef90_UPI001D09F5D4	NA	NA
UHGV-0157153_42	Pfam	PF08809	NA	DUF1799
UHGV-0157153_42	Structural annotation	PF08809	NA	NA
UHGV-0157153_43	PHROG	phrog_2335	tail length tape measure protein	tail
UHGV-0157153_43	UniRef90	UniRef90_UPI001EDA4021	tape measure protein	NA
UHGV-0157153_43	eggNOG-mapper	1408428.JNJP01000163_gene765	tape measure	NA
UHGV-0157153_43	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0157153_43	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0157153_43	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA