UHGV-0157174

Genome information

Genome length 29,713 bps

CDS count 45

Completeness 67.11% (medium-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0157174
vOTU ID	vOTU-018223
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_461195
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.11% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.46
Jumbo phage	No

Genome content
Genome length	29,713 bps
GC content	50.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	92.50%
Average CDS length	614.93 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0157174_1	PHROG	phrog_1129	holin	lysis
UHGV-0157174_1	UniRef90	UniRef90_A0A2V2CUX8	Enolase	NA
UHGV-0157174_1	eggNOG-mapper	742740.HMPREF9474_03522	NA	NA
UHGV-0157174_1	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0157174_1	Structural annotation	PF06946	NA	NA
UHGV-0157174_2	PHROG	phrog_4105	NA	unknown function
UHGV-0157174_2	eggNOG-mapper	592026.GCWU0000282_003290	NA	NA
UHGV-0157174_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0157174_3	PHROG	phrog_1794	amidase	lysis
UHGV-0157174_3	UniRef90	UniRef90_R5AZE6	N-acetylmuramoyl-L-alanine amidase family 2	NA
UHGV-0157174_3	eggNOG-mapper	1235793.C809_04312	Ami_2	NA
UHGV-0157174_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0157174_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0157174_3	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0157174_4	Structural annotation	PF00629, NF033675	NA	NA
UHGV-0157174_5	eggNOG-mapper	411473.RUMCAL_00420	nuclear chromosome segregation	NA
UHGV-0157174_5	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0157174_6	PHROG	phrog_372	tail protein	tail
UHGV-0157174_6	UniRef90	UniRef90_UPI001C0AA9E4	NA	NA
UHGV-0157174_6	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-0157174_6	Pfam	PF05895	NA	DUF859
UHGV-0157174_6	COG	COG4675	Phage tail collar domain	NA
UHGV-0157174_6	Structural annotation	PF05895, NF010681, COG3401	NA	NA
UHGV-0157174_7	PHROG	phrog_6616	tail protein	tail
UHGV-0157174_7	UniRef90	UniRef90_R5GWP5	KID repeat family protein	NA
UHGV-0157174_7	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-0157174_7	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0157174_8	PHROG	phrog_1194	NA	unknown function
UHGV-0157174_8	UniRef90	UniRef90_A0A0B3VTI7	NA	NA
UHGV-0157174_8	eggNOG-mapper	1280692.AUJL01000027_gene2149	NA	NA
UHGV-0157174_8	Pfam	PF20458	NA	DUF6711
UHGV-0157174_8	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0157174_9	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0157174_9	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0157174_9	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0157174_9	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0157174_10	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0157174_11	UniRef90	UniRef90_UPI00164D364F	NA	NA
UHGV-0157174_11	eggNOG-mapper	469596.HMPREF9488_01311	NA	NA
UHGV-0157174_11	Pfam	PF16478	NA	DUF5055
UHGV-0157174_11	Structural annotation	PF16478	NA	NA
UHGV-0157174_12	PHROG	phrog_158	major tail protein	tail
UHGV-0157174_12	UniRef90	UniRef90_UPI00164D954A	phage tail protein	NA
UHGV-0157174_12	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0157174_12	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0157174_12	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0157174_13	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0157174_14	eggNOG-mapper	1232453.BAIF02000058_gene1631	NA	NA
UHGV-0157174_15	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0157174_16	UniRef90	UniRef90_UPI00164E20D5	phage head-tail connector protein	NA
UHGV-0157174_16	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0157174_16	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0157174_16	Structural annotation	TIGR01560	NA	NA
UHGV-0157174_17	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0157174_17	UniRef90	UniRef90_UPI00164DD2D5	NA	NA
UHGV-0157174_17	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-0157174_17	Pfam	PF17236	NA	DUF5309
UHGV-0157174_17	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-0157174_20	PHROG	phrog_64	portal protein	head and packaging
UHGV-0157174_20	UniRef90	UniRef90_UPI001C02F349	phage portal protein	NA
UHGV-0157174_20	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0157174_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0157174_20	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0157174_21	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0157174_21	UniRef90	UniRef90_UPI00164E3A67	phage terminase large subunit	NA
UHGV-0157174_21	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0157174_21	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0157174_21	COG	COG5410	NA	NA
UHGV-0157174_21	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0157174_22	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-0157174_22	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0157174_22	Structural annotation	PF12869, MF_01959, NF009635, COG0361	NA	NA
UHGV-0157174_23	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0157174_23	PHROG	phrog_95	integrase	integration and excision
UHGV-0157174_23	UniRef90	UniRef90_UPI00164DD5BB	recombinase family protein	NA
UHGV-0157174_23	eggNOG-mapper	697329.Rumal_3466	resolvase	NA
UHGV-0157174_23	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0157174_23	Pfam	PF07508	Recombinase	Recombinase
UHGV-0157174_23	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0157174_23	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0157174_26	Structural annotation	PF13742, MF_01959, NF009635, COG3390	NA	NA
UHGV-0157174_27	PHROG	phrog_4264	NA	unknown function
UHGV-0157174_27	eggNOG-mapper	442493.A8E2H1_BPPHE	NA	NA
UHGV-0157174_28	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0157174_28	UniRef90	UniRef90_UPI001C012D23	DNA-packaging protein	NA
UHGV-0157174_28	eggNOG-mapper	1235793.C809_00539	NA	NA
UHGV-0157174_28	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0157174_28	Structural annotation	PF16677	NA	NA
UHGV-0157174_30	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0157174_30	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0157174_30	UniRef90	UniRef90_A0A1V5X1Q4	HTH-type transcriptional regulator SinR	NA
UHGV-0157174_30	eggNOG-mapper	1123263.AUKY01000012_gene1991	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0157174_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0157174_30	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0157174_30	Structural annotation	PF13560, TIGR03070, COG1396	NA	NA
UHGV-0157174_33	PHROG	phrog_924	NA	unknown function
UHGV-0157174_33	UniRef90	UniRef90_UPI00086F80F1	NA	NA
UHGV-0157174_33	eggNOG-mapper	1127357.I1TEE2_9CAUD	NA	NA
UHGV-0157174_33	Pfam	PF04448	NA	DUF551
UHGV-0157174_35	UniRef90	UniRef90_Q5YA82	28	NA
UHGV-0157174_35	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0157174_38	PHROG	phrog_22389	NA	unknown function
UHGV-0157174_38	Structural annotation	PF01402, COG4710	NA	NA
UHGV-0157174_41	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0157174_41	UniRef90	UniRef90_A0A845MWR1	Restriction alleviation protein, Lar family	NA
UHGV-0157174_41	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0157174_41	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0157174_41	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0157174_42	PHROG	phrog_1156	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0157174_42	UniRef90	UniRef90_UPI00164E4416	phage/plasmid primase, P4 family	NA
UHGV-0157174_42	eggNOG-mapper	649747.HMPREF0083_00553	Phage plasmid primase, P4 family	NA
UHGV-0157174_42	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0157174_42	Pfam	PF19263	NA	DUF5906
UHGV-0157174_42	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0157174_42	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0157174_42	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0157174_42	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF005477, COG3378	NA	NA
UHGV-0157174_44	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0157174_44	UniRef90	UniRef90_UPI00164DE9BA	primase C-terminal domain-containing protein	NA
UHGV-0157174_44	eggNOG-mapper	1121866.AUGK01000003_gene1409	Phage plasmid primase, P4 family domain protein	NA
UHGV-0157174_44	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0157174_44	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-0157174_44	Structural annotation	PF08708, PF09250, COG4983	NA	NA
UHGV-0157174_45	PHROG	phrog_30550	NA	unknown function
UHGV-0157174_45	UniRef90	UniRef90_A0A2N2CRJ1	Hydrolase_2 domain-containing protein	NA
UHGV-0157174_45	eggNOG-mapper	1519439.JPJG01000077_gene920	Cell Wall Hydrolase	NA
UHGV-0157174_45	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA