UHGV-0157265

Genome information

Genome length 33,247 bps

CDS count 51

Completeness 72.62% (medium-quality)

geNomad score 0.9755

Prediction confidence Confident

Genome information
Genome ID	UHGV-0157265
vOTU ID	vOTU-027800
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_474546
BioSample	SAMN06115437
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.62% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9755
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.56
Jumbo phage	No

Genome content
Genome length	33,247 bps
GC content	46.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	92.97%
Average CDS length	609.53 bps
tRNA count	1
Suppressor tRNA genes	1

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0157265_2	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0157265_2	PHROG	phrog_435	endolysin	lysis
UHGV-0157265_2	UniRef90	UniRef90_UPI000F0CFF53	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0157265_2	eggNOG-mapper	591001.Acfer_1125	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0157265_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0157265_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0157265_2	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0157265_5	PHROG	phrog_1141	tail fiber protein	tail
UHGV-0157265_5	UniRef90	UniRef90_A0A3C1IQ26	NA	NA
UHGV-0157265_5	eggNOG-mapper	1286631.X805_38770	NA	NA
UHGV-0157265_5	Pfam	PF14301	NA	DUF4376
UHGV-0157265_5	Structural annotation	PF14301	NA	NA
UHGV-0157265_6	Structural annotation	PF16116	NA	NA
UHGV-0157265_7	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0157265_8	PHROG	phrog_13589	NA	unknown function
UHGV-0157265_8	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0157265_9	PHROG	phrog_31538	NA	unknown function
UHGV-0157265_9	eggNOG-mapper	428125.CLOLEP_01433	NA	NA
UHGV-0157265_10	eggNOG-mapper	665956.HMPREF1032_00696	NA	NA
UHGV-0157265_10	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-0157265_11	PHROG	phrog_1348	tail fiber protein	tail
UHGV-0157265_11	Structural annotation	PF14301	NA	NA
UHGV-0157265_12	PHROG	phrog_13336	NA	unknown function
UHGV-0157265_12	eggNOG-mapper	2754.EH55_13265	NA	NA
UHGV-0157265_13	eggNOG-mapper	568816.Acin_1905	NA	NA
UHGV-0157265_13	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0157265_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0157265_14	UniRef90	UniRef90_UPI0015588CAB	phage tail family protein	NA
UHGV-0157265_14	eggNOG-mapper	568816.Acin_1906	Phage tail protein	NA
UHGV-0157265_14	Structural annotation	PF20753, PF19512, TIGR01633, COG4722	NA	NA
UHGV-0157265_15	PHROG	phrog_12798	NA	unknown function
UHGV-0157265_15	UniRef90	UniRef90_R6WQ18	Tape measure domain-containing protein	NA
UHGV-0157265_15	eggNOG-mapper	1273103.NM10_06751	tape measure	NA
UHGV-0157265_15	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0157265_15	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0157265_15	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0157265_15	Structural annotation	PF20155, MF_04138, TIGR01760, COG3941	NA	NA
UHGV-0157265_17	Structural annotation	PF11836	NA	NA
UHGV-0157265_18	PHROG	phrog_1407	major tail protein	tail
UHGV-0157265_18	UniRef90	UniRef90_A0A380NJ51	Predicted secreted protein	NA
UHGV-0157265_18	eggNOG-mapper	1000569.HMPREF1040_0191	Phage tail tube protein	NA
UHGV-0157265_18	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0157265_18	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0157265_18	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0157265_19	UniRef90	UniRef90_R6WK09	Conserved domain protein	NA
UHGV-0157265_19	eggNOG-mapper	1111454.HMPREF1250_1050	NA	NA
UHGV-0157265_19	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0157265_20	eggNOG-mapper	1111454.HMPREF1250_1049	NA	NA
UHGV-0157265_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0157265_21	UniRef90	UniRef90_F9MMJ2	Phage protein, HK97 gp10 family	NA
UHGV-0157265_21	eggNOG-mapper	568816.Acin_1234	NA	NA
UHGV-0157265_21	Structural annotation	TIGR01725	NA	NA
UHGV-0157265_23	PHROG	phrog_422	major head protein	head and packaging
UHGV-0157265_23	UniRef90	UniRef90_R6WWZ7	Gp7	NA
UHGV-0157265_23	eggNOG-mapper	1430331.EP10_10365	NA	NA
UHGV-0157265_23	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0157265_23	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0157265_24	eggNOG-mapper	1280706.AUJE01000003_gene2260	NA	NA
UHGV-0157265_24	Structural annotation	PF06810	NA	NA
UHGV-0157265_26	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0157265_26	UniRef90	UniRef90_R6AE12	TNT domain-containing protein	NA
UHGV-0157265_26	eggNOG-mapper	1232428.CAVO010000021_gene805	NA	NA
UHGV-0157265_27	PHROG	phrog_145	portal protein	head and packaging
UHGV-0157265_27	UniRef90	UniRef90_R6WQ48	Conserved domain protein	NA
UHGV-0157265_27	eggNOG-mapper	1232428.CAVO010000021_gene806	NA	NA
UHGV-0157265_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0157265_28	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0157265_28	UniRef90	UniRef90_UPI001F2335B1	phage terminase large subunit	NA
UHGV-0157265_28	eggNOG-mapper	1123489.AUAN01000010_gene364	TIGRFAM Phage	NA
UHGV-0157265_28	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0157265_28	COG	COG5410	NA	NA
UHGV-0157265_28	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0157265_29	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0157265_29	Structural annotation	PF07141	NA	NA
UHGV-0157265_30	KOfam	K22226	ahbC; Fe-coproporphyrin III synthase	NA
UHGV-0157265_30	UniRef90	UniRef90_H3K6T6	Radical SAM core domain-containing protein	NA
UHGV-0157265_30	eggNOG-mapper	411459.RUMOBE_01047	Radical SAM superfamily	NA
UHGV-0157265_30	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0157265_30	COG	COG0535	Radical SAM superfamily maturase, SkfB/NifB/PqqE family	NA
UHGV-0157265_30	Structural annotation	PF00834, MF_00660, NF012164, COG0535	NA	NA
UHGV-0157265_31	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-0157265_31	UniRef90	UniRef90_A0A516LJ12	Putative beta-glucosyl-HMC-alpha-glucosyl-transferase	NA
UHGV-0157265_31	eggNOG-mapper	508419.F8J156_9CAUD	NA	NA
UHGV-0157265_31	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-0157265_31	Structural annotation	PF20691, NF041865, COG1216	NA	NA
UHGV-0157265_32	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0157265_32	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0157265_32	UniRef90	UniRef90_A0A417WD62	DNA methylase	NA
UHGV-0157265_32	eggNOG-mapper	1399942.U3PCR3_9CAUD	helicase activity	NA
UHGV-0157265_32	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0157265_32	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0157265_32	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0157265_33	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-0157265_33	Structural annotation	PF05263, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0157265_34	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0157265_34	UniRef90	UniRef90_UPI0018C4B0C5	NA	NA
UHGV-0157265_34	eggNOG-mapper	1347392.CCEZ01000043_gene417	NA	NA
UHGV-0157265_34	Pfam	PF06356	NA	DUF1064
UHGV-0157265_34	Structural annotation	PF06356, MF_04160, NF033179	NA	NA
UHGV-0157265_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0157265_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0157265_35	UniRef90	UniRef90_E8LE33	Single-stranded DNA-binding protein	NA
UHGV-0157265_35	eggNOG-mapper	626939.HMPREF9443_01150	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0157265_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0157265_35	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0157265_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0157265_35	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0157265_35	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0157265_38	PHROG	phrog_9403	NA	unknown function
UHGV-0157265_38	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0157265_39	eggNOG-mapper	665956.HMPREF1032_02663	NA	NA
UHGV-0157265_42	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0157265_42	UniRef90	UniRef90_UPI000288F0DD	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0157265_42	eggNOG-mapper	1033737.CAEV01000029_gene310	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0157265_42	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0157265_42	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0157265_42	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0157265_42	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0157265_42	Structural annotation	PF09681, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0157265_43	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0157265_43	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0157265_43	Pfam	PF05772	NinB protein	NinB
UHGV-0157265_43	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0157265_44	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0157265_44	UniRef90	UniRef90_A0A843HP81	ERF family protein	NA
UHGV-0157265_44	eggNOG-mapper	1298920.KI911353_gene4870	ERF superfamily	NA
UHGV-0157265_44	Pfam	PF04404	ERF superfamily	ERF
UHGV-0157265_44	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0157265_45	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0157265_45	UniRef90	UniRef90_R6WX74	Siphovirus family protein	NA
UHGV-0157265_45	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0157265_45	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0157265_45	Structural annotation	PF05565	NA	NA
UHGV-0157265_47	Pfam	PF01476	LysM domain	LysM
UHGV-0157265_47	COG	COG1388	LysM repeat	NA
UHGV-0157265_49	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0157265_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0157265_49	UniRef90	UniRef90_A0A847PN47	Helix-turn-helix transcriptional regulator	NA
UHGV-0157265_49	eggNOG-mapper	718252.FP2_16270	sequence-specific DNA binding	NA
UHGV-0157265_49	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0157265_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0157265_49	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0157265_49	Structural annotation	PF12844, NF041951, COG1476	NA	NA