UHGV-0157271

Genome information

Genome length 42,161 bps

CDS count 72

Completeness 99.90% (high-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0157271
vOTU ID	vOTU-009175
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_474548
BioSample	SAMN06115437
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.93
Jumbo phage	No

Genome content
Genome length	42,161 bps
GC content	50.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	89.31%
Average CDS length	526.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0157271_2	KOfam	K14059	int; integrase	NA
UHGV-0157271_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0157271_2	UniRef90	UniRef90_UPI001F166C84	tyrosine-type recombinase/integrase	NA
UHGV-0157271_2	eggNOG-mapper	693746.OBV_25530	Phage integrase family	NA
UHGV-0157271_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0157271_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0157271_2	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0157271_4	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0157271_5	Structural annotation	PF12510	NA	NA
UHGV-0157271_6	PHROG	phrog_20016	NA	unknown function
UHGV-0157271_6	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0157271_6	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0157271_7	PHROG	phrog_16490	NA	unknown function
UHGV-0157271_7	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0157271_8	PHROG	phrog_22984	NA	unknown function
UHGV-0157271_9	PHROG	phrog_21718	NA	unknown function
UHGV-0157271_9	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0157271_10	PHROG	phrog_3754	NA	unknown function
UHGV-0157271_10	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0157271_11	KOfam	K07684	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	NA
UHGV-0157271_11	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0157271_11	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0157271_12	PHROG	phrog_13256	NA	unknown function
UHGV-0157271_12	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0157271_13	eggNOG-mapper	33035.JPJF01000090_gene94	NA	NA
UHGV-0157271_14	KOfam	K07273	acm; lysozyme	NA
UHGV-0157271_14	PHROG	phrog_291	endolysin	lysis
UHGV-0157271_14	UniRef90	UniRef90_A0A1Q6T343	Peptidase_M23 domain-containing protein	NA
UHGV-0157271_14	eggNOG-mapper	877424.ATWC01000009_gene1193	Glycosyl hydrolases family 25	NA
UHGV-0157271_14	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0157271_14	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0157271_14	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0157271_14	Structural annotation	PF01551, PF01183, NF040883, COG0739, COG3757	NA	NA
UHGV-0157271_16	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0157271_16	Structural annotation	PF10651, NF033814	NA	NA
UHGV-0157271_17	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0157271_17	Structural annotation	NF040910	NA	NA
UHGV-0157271_20	PHROG	phrog_9534	head protein	head and packaging
UHGV-0157271_20	UniRef90	UniRef90_A0A0E0TFT0	Phage-related putative tail protein	NA
UHGV-0157271_20	eggNOG-mapper	748224.HMPREF9436_03323	COG NOG18825 non supervised orthologous group	NA
UHGV-0157271_21	PHROG	phrog_538	minor tail protein	tail
UHGV-0157271_21	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0157271_21	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-0157271_21	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0157271_21	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0157271_22	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0157271_22	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0157271_22	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-0157271_22	COG	COG4722	Phage-related protein YomH	NA
UHGV-0157271_22	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0157271_23	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0157271_23	UniRef90	UniRef90_A0A1S5SAD9	Tail tape measure protein	NA
UHGV-0157271_23	eggNOG-mapper	545697.HMPREF0216_02861	tail tape measure protein	NA
UHGV-0157271_23	COG	COG5283	Phage-related tail protein	NA
UHGV-0157271_24	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0157271_24	UniRef90	UniRef90_A0A7D4FJN5	HNH endonuclease	NA
UHGV-0157271_24	eggNOG-mapper	1423775.BAMN01000011_gene594	HNH endonuclease domain protein	NA
UHGV-0157271_24	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0157271_24	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0157271_24	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0157271_25	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0157271_25	UniRef90	UniRef90_A0A0R1K502	Phage tape measure protein	NA
UHGV-0157271_25	eggNOG-mapper	573061.Clocel_3967	tape measure	NA
UHGV-0157271_25	COG	COG5283	Phage-related tail protein	NA
UHGV-0157271_25	Structural annotation	PF20155	NA	NA
UHGV-0157271_26	PHROG	phrog_20920	NA	unknown function
UHGV-0157271_26	eggNOG-mapper	1121335.Clst_0399	NA	NA
UHGV-0157271_26	Structural annotation	PF16674	NA	NA
UHGV-0157271_28	PHROG	phrog_18646	NA	unknown function
UHGV-0157271_29	PHROG	phrog_885	major tail protein	tail
UHGV-0157271_29	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0157271_29	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0157271_29	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0157271_30	Structural annotation	PF11367	NA	NA
UHGV-0157271_31	PHROG	phrog_17977	NA	unknown function
UHGV-0157271_31	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0157271_31	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0157271_33	PHROG	phrog_544	major head protein	head and packaging
UHGV-0157271_33	UniRef90	UniRef90_UPI0019576143	N4-gp56 family major capsid protein	NA
UHGV-0157271_33	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-0157271_33	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0157271_33	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0157271_34	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0157271_34	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0157271_34	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0157271_35	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0157271_35	UniRef90	UniRef90_A0A3A9EIF3	HK97 gp10 family phage protein	NA
UHGV-0157271_35	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0157271_35	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0157271_35	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0157271_36	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0157271_36	UniRef90	UniRef90_A0A3A9EHQ6	Phage_Mu_F domain-containing protein	NA
UHGV-0157271_36	eggNOG-mapper	1111121.HMPREF1247_0797	cell adhesion	NA
UHGV-0157271_36	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0157271_36	COG	COG2369	NA	NA
UHGV-0157271_36	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0157271_37	PHROG	phrog_64	portal protein	head and packaging
UHGV-0157271_37	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0157271_37	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0157271_37	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0157271_37	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0157271_38	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0157271_38	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0157271_38	UniRef90	UniRef90_UPI001C3B9235	PBSX family phage terminase large subunit	NA
UHGV-0157271_38	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-0157271_38	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0157271_38	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0157271_38	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0157271_38	COG	COG1783	Phage terminase large subunit	NA
UHGV-0157271_38	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0157271_39	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0157271_39	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0157271_39	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0157271_39	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0157271_40	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0157271_40	UniRef90	UniRef90_UPI001C01192B	DNA adenine methylase	NA
UHGV-0157271_40	eggNOG-mapper	1236504.HMPREF2132_01695	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0157271_40	PADLOC	MTase_II_00075	Type II methyltransferase	RM
UHGV-0157271_40	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0157271_40	Structural annotation	PF02086, NF008152, COG0338	NA	NA
UHGV-0157271_41	PHROG	phrog_419	NA	unknown function
UHGV-0157271_41	UniRef90	UniRef90_A0A1L5L3J8	PGDYG protein (Fragment)	NA
UHGV-0157271_41	eggNOG-mapper	203119.Cthe_2457	NA	NA
UHGV-0157271_42	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0157271_42	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-0157271_42	Pfam	PF07374	NA	DUF1492
UHGV-0157271_42	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0157271_42	Structural annotation	PF04545, PF18323, MF_00674, NF009172, COG1191	NA	NA
UHGV-0157271_46	Structural annotation	PF16069, NF040508	NA	NA
UHGV-0157271_47	PHROG	phrog_9958	NA	unknown function
UHGV-0157271_47	UniRef90	UniRef90_UPI001D08A241	NA	NA
UHGV-0157271_47	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-0157271_47	Structural annotation	PF19789	NA	NA
UHGV-0157271_53	PHROG	phrog_19458	primase	DNA, RNA and nucleotide metabolism
UHGV-0157271_53	UniRef90	UniRef90_A0A1V5KAU2	DarA_C domain-containing protein	NA
UHGV-0157271_53	eggNOG-mapper	657322.FPR_26770	NA	NA
UHGV-0157271_53	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-0157271_56	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0157271_56	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0157271_56	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0157271_56	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0157271_56	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0157271_56	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0157271_56	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0157271_58	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0157271_58	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0157271_58	UniRef90	UniRef90_A0A1Q6T150	Single-stranded DNA-binding protein	NA
UHGV-0157271_58	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0157271_58	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0157271_58	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0157271_58	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0157271_58	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0157271_58	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0157271_59	PHROG	phrog_9804	NA	unknown function
UHGV-0157271_59	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0157271_60	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0157271_60	eggNOG-mapper	1123314.AUIO01000007_gene496	NA	NA
UHGV-0157271_60	Pfam	PF19808	NA	DUF6291
UHGV-0157271_60	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0157271_60	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0157271_60	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0157271_60	Structural annotation	PF07261, TIGR01446, COG3935	NA	NA
UHGV-0157271_61	PHROG	phrog_7566	NA	unknown function
UHGV-0157271_61	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0157271_62	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0157271_62	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0157271_62	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0157271_62	Structural annotation	PF05772	NA	NA
UHGV-0157271_63	eggNOG-mapper	1041142.ATTP01000043_gene5324	NA	NA
UHGV-0157271_66	PHROG	phrog_4433	NA	unknown function
UHGV-0157271_66	UniRef90	UniRef90_UPI0015C58C2D	NA	NA
UHGV-0157271_66	eggNOG-mapper	665950.HMPREF1025_01373	regulation of DNA-templated transcription, elongation	NA
UHGV-0157271_66	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0157271_67	Structural annotation	PF17259	NA	NA
UHGV-0157271_68	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0157271_68	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0157271_69	UniRef90	UniRef90_A0A367GIH6	HTH cro/C1-type domain-containing protein	NA
UHGV-0157271_69	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0157271_69	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0157271_69	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0157271_70	UniRef90	UniRef90_A0A8D9PDN2	DNA-binding protein	NA
UHGV-0157271_70	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0157271_71	UniRef90	UniRef90_UPI00189845EC	helix-turn-helix domain-containing protein	NA
UHGV-0157271_71	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0157271_71	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0157271_71	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0157271_72	eggNOG-mapper	500635.MITSMUL_05163	NA	NA