UHGV-0157403

Genome information

Genome length 34,234 bps

CDS count 53

Completeness 92.59% (high-quality)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-0157403
vOTU ID	vOTU-064604
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_472046
BioSample	SAMN06111939
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.59% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.31
Jumbo phage	No

Genome content
Genome length	34,234 bps
GC content	41.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	89.91%
Average CDS length	585.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0157403_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0157403_1	PHROG	phrog_2742	endolysin	lysis
UHGV-0157403_1	UniRef90	UniRef90_A0A1C5YBQ9	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0157403_1	eggNOG-mapper	97139.C824_00247	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0157403_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0157403_1	Pfam	PF14200	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
UHGV-0157403_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0157403_2	PHROG	phrog_1129	holin	lysis
UHGV-0157403_2	UniRef90	UniRef90_UPI001BC82F37	phage holin family protein	NA
UHGV-0157403_2	eggNOG-mapper	411460.RUMTOR_01325	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0157403_2	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0157403_2	Structural annotation	PF16079	NA	NA
UHGV-0157403_3	UniRef90	UniRef90_A0A3R6SMZ1	CTP synthase	NA
UHGV-0157403_3	eggNOG-mapper	411490.ANACAC_00599	NA	NA
UHGV-0157403_4	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0157403_4	UniRef90	UniRef90_UPI000467D60B	collagen-like protein	NA
UHGV-0157403_4	eggNOG-mapper	411470.RUMGNA_02230	NA	NA
UHGV-0157403_4	Structural annotation	PF14594, PF19081, TIGR01665, COG4926	NA	NA
UHGV-0157403_5	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0157403_5	UniRef90	UniRef90_A0A1C5Y9Z6	Phage-related protein	NA
UHGV-0157403_5	eggNOG-mapper	411470.RUMGNA_02229	NA	NA
UHGV-0157403_5	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0157403_5	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0157403_5	COG	COG4722	Phage-related protein YomH	NA
UHGV-0157403_5	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0157403_6	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0157403_6	UniRef90	UniRef90_A0A8B3C0A6	TMP_3 domain-containing protein	NA
UHGV-0157403_6	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-0157403_6	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0157403_6	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0157403_6	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0157403_6	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0157403_7	PHROG	phrog_706	NA	unknown function
UHGV-0157403_7	UniRef90	UniRef90_A7B3U5	Bacteriophage Gp15 protein	NA
UHGV-0157403_7	eggNOG-mapper	411470.RUMGNA_02226	COG NOG24969 non supervised orthologous group	NA
UHGV-0157403_7	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0157403_7	Structural annotation	PF06854	NA	NA
UHGV-0157403_8	PHROG	phrog_4450	NA	unknown function
UHGV-0157403_8	UniRef90	UniRef90_A0A7M2RHR3	AP endonuclease	NA
UHGV-0157403_8	eggNOG-mapper	411470.RUMGNA_02225	NA	NA
UHGV-0157403_8	Pfam	PF20378	NA	DUF6673
UHGV-0157403_8	Structural annotation	PF20378	NA	NA
UHGV-0157403_9	PHROG	phrog_3099	NA	unknown function
UHGV-0157403_9	eggNOG-mapper	411470.RUMGNA_02224	NA	NA
UHGV-0157403_9	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0157403_10	PHROG	phrog_3266	tail completion	connector
UHGV-0157403_10	UniRef90	UniRef90_UPI001F2730AA	chloramphenicol resistance protein	NA
UHGV-0157403_10	eggNOG-mapper	411470.RUMGNA_02223	NA	NA
UHGV-0157403_10	Structural annotation	PF12691	NA	NA
UHGV-0157403_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0157403_11	UniRef90	UniRef90_UPI001C8E2A32	minor capsid protein	NA
UHGV-0157403_11	eggNOG-mapper	411470.RUMGNA_02222	NA	NA
UHGV-0157403_11	Structural annotation	PF11114	NA	NA
UHGV-0157403_12	PHROG	phrog_3366	NA	unknown function
UHGV-0157403_12	eggNOG-mapper	411470.RUMGNA_02221	NA	NA
UHGV-0157403_12	Pfam	PF20536	NA	DUF6751
UHGV-0157403_12	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0157403_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0157403_13	eggNOG-mapper	658655.HMPREF0988_02559	NA	NA
UHGV-0157403_14	PHROG	phrog_422	major head protein	head and packaging
UHGV-0157403_14	eggNOG-mapper	411470.RUMGNA_02219	NA	NA
UHGV-0157403_14	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0157403_15	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0157403_15	UniRef90	UniRef90_A5KPA4	Phage minor structural protein GP20	NA
UHGV-0157403_15	eggNOG-mapper	658655.HMPREF0988_02561	Phage minor structural protein GP20	NA
UHGV-0157403_15	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0157403_15	Structural annotation	PF06810	NA	NA
UHGV-0157403_16	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0157403_16	Structural annotation	NF040910	NA	NA
UHGV-0157403_18	eggNOG-mapper	411470.RUMGNA_02215	NA	NA
UHGV-0157403_19	eggNOG-mapper	411470.RUMGNA_02214	NA	NA
UHGV-0157403_19	Structural annotation	PF08948, MF_01537, NF007541, COG3123	NA	NA
UHGV-0157403_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0157403_20	UniRef90	UniRef90_UPI001EE14397	phage minor capsid protein	NA
UHGV-0157403_20	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-0157403_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0157403_20	COG	COG2369	NA	NA
UHGV-0157403_20	Structural annotation	PF06152	NA	NA
UHGV-0157403_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-0157403_21	UniRef90	UniRef90_A7B3T1	Putative phage minor capsid protein	NA
UHGV-0157403_21	eggNOG-mapper	411470.RUMGNA_02212	NA	NA
UHGV-0157403_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0157403_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0157403_22	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0157403_22	UniRef90	UniRef90_A7B3T0	Phage terminase, large subunit, PBSX family	NA
UHGV-0157403_22	eggNOG-mapper	411470.RUMGNA_02211	NA	NA
UHGV-0157403_22	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0157403_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0157403_22	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0157403_23	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0157403_23	UniRef90	UniRef90_UPI001D05A70C	transposase	NA
UHGV-0157403_23	eggNOG-mapper	411470.RUMGNA_02210	transposase activity	NA
UHGV-0157403_23	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0157403_23	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0157403_23	Structural annotation	PF07141	NA	NA
UHGV-0157403_25	PHROG	phrog_8680	NA	unknown function
UHGV-0157403_25	UniRef90	UniRef90_UPI00073EEAD0	NA	NA
UHGV-0157403_25	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0157403_25	Pfam	PF14386	NA	DUF4417
UHGV-0157403_25	Structural annotation	PF14386	NA	NA
UHGV-0157403_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0157403_26	eggNOG-mapper	742765.HMPREF9457_02116	NA	NA
UHGV-0157403_26	Structural annotation	PF02996	NA	NA
UHGV-0157403_29	PHROG	phrog_10714	NA	unknown function
UHGV-0157403_30	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0157403_30	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0157403_30	UniRef90	UniRef90_A0A3A5TEY8	Methyltransferase	NA
UHGV-0157403_30	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-0157403_30	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0157403_30	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0157403_30	COG	COG0863	DNA modification methylase	NA
UHGV-0157403_30	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0157403_32	Structural annotation	PF17399	NA	NA
UHGV-0157403_33	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0157403_33	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0157403_33	UniRef90	UniRef90_S2ZLG6	IstB_IS21 domain-containing protein	NA
UHGV-0157403_33	eggNOG-mapper	476272.RUMHYD_03359	DNA-dependent DNA replication	NA
UHGV-0157403_33	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0157403_33	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0157403_33	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0157403_34	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0157403_34	UniRef90	UniRef90_S2YJX3	Phage_rep_org_N domain-containing protein	NA
UHGV-0157403_34	eggNOG-mapper	397288.C806_03002	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0157403_34	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0157403_34	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0157403_34	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0157403_34	Structural annotation	PF09681, TIGR01714, COG3355	NA	NA
UHGV-0157403_35	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0157403_35	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0157403_35	UniRef90	UniRef90_A7B3R6	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0157403_35	eggNOG-mapper	411470.RUMGNA_02196	COG COG4570 Holliday junction resolvase	NA
UHGV-0157403_35	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0157403_35	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0157403_36	PHROG	phrog_7566	NA	unknown function
UHGV-0157403_36	UniRef90	UniRef90_A0A3A5TWB4	Phosphoenolpyruvate carboxykinase	NA
UHGV-0157403_37	eggNOG-mapper	411490.ANACAC_00804	NA	NA
UHGV-0157403_37	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0157403_38	PHROG	phrog_14970	NA	unknown function
UHGV-0157403_38	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-0157403_38	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0157403_38	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0157403_41	PHROG	phrog_5070	NA	unknown function
UHGV-0157403_41	UniRef90	UniRef90_A0A174CB23	Predicted acyltransferase	NA
UHGV-0157403_41	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0157403_41	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0157403_41	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0157403_44	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0157403_44	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0157403_44	UniRef90	UniRef90_UPI001C3B87F0	Phage antirepressor	NA
UHGV-0157403_44	eggNOG-mapper	1232452.BAIB02000007_gene1603	BRO family, N-terminal domain	NA
UHGV-0157403_44	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0157403_44	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0157403_44	COG	COG3617	Prophage antirepressor	NA
UHGV-0157403_44	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0157403_45	eggNOG-mapper	1235790.C805_00014	NA	NA
UHGV-0157403_46	PHROG	phrog_2211	NA	unknown function
UHGV-0157403_50	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0157403_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0157403_50	UniRef90	UniRef90_UPI001D04C7E1	helix-turn-helix domain-containing protein	NA
UHGV-0157403_50	eggNOG-mapper	1235790.C805_00012	Helix-turn-helix domain	NA
UHGV-0157403_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0157403_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0157403_50	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0157403_52	PHROG	phrog_7974	NA	unknown function
UHGV-0157403_52	UniRef90	UniRef90_A7B3P6	NA	NA
UHGV-0157403_52	eggNOG-mapper	411470.RUMGNA_02177	belongs to the thioredoxin family	NA
UHGV-0157403_52	Pfam	PF14020	NA	DUF4236
UHGV-0157403_52	COG	COG3118	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	NA
UHGV-0157403_52	Structural annotation	PF14020, PF02368, COG1721	NA	NA
UHGV-0157403_53	KOfam	K14059	int; integrase	NA
UHGV-0157403_53	PHROG	phrog_1	integrase	integration and excision
UHGV-0157403_53	UniRef90	UniRef90_S2ZG06	Tyr recombinase domain-containing protein	NA
UHGV-0157403_53	eggNOG-mapper	1235792.C808_05256	Belongs to the 'phage' integrase family	NA
UHGV-0157403_53	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0157403_53	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0157403_53	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA