UHGV-0157467

Genome information

Genome length 44,138 bps

CDS count 73

Completeness 99.90% (high-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0157467
vOTU ID	vOTU-010657
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_477194
BioSample	SAMN06115508
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.38
Jumbo phage	No

Genome content
Genome length	44,138 bps
GC content	61.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	90.60%
Average CDS length	550.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0157467_1	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0157467_2	PHROG	phrog_28802	NA	unknown function
UHGV-0157467_3	PHROG	phrog_20016	NA	unknown function
UHGV-0157467_3	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0157467_3	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0157467_3	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0157467_4	PHROG	phrog_16490	NA	unknown function
UHGV-0157467_4	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0157467_5	UniRef90	UniRef90_R7BK61	NUMOD1 domain-containing protein	NA
UHGV-0157467_5	eggNOG-mapper	1499689.CCNN01000004_gene307	Intron-encoded nuclease repeat 2	NA
UHGV-0157467_5	Structural annotation	PF20987, PF15653, TIGR01453	NA	NA
UHGV-0157467_6	PHROG	phrog_16490	NA	unknown function
UHGV-0157467_6	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0157467_7	PHROG	phrog_22984	NA	unknown function
UHGV-0157467_8	PHROG	phrog_21718	NA	unknown function
UHGV-0157467_8	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0157467_9	PHROG	phrog_3754	NA	unknown function
UHGV-0157467_9	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0157467_11	PHROG	phrog_21357	endolysin	lysis
UHGV-0157467_11	UniRef90	UniRef90_G9YP37	SLH domain-containing protein	NA
UHGV-0157467_11	eggNOG-mapper	243164.DET1070	SMART Glycoside hydrolase, family 25 subgroup	NA
UHGV-0157467_11	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0157467_11	COG	COG1388	LysM repeat	NA
UHGV-0157467_11	Structural annotation	PF10030, TIGR02594, COG3942	NA	NA
UHGV-0157467_12	PHROG	phrog_13256	NA	unknown function
UHGV-0157467_12	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0157467_13	UniRef90	UniRef90_A0A1T5AMW7	NAGPA domain-containing protein	NA
UHGV-0157467_13	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0157467_14	PHROG	phrog_4105	NA	unknown function
UHGV-0157467_16	PHROG	phrog_134	NA	unknown function
UHGV-0157467_16	UniRef90	UniRef90_A0A3E2WBQ5	XkdX family protein	NA
UHGV-0157467_16	eggNOG-mapper	1297617.JPJD01000099_gene2170	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0157467_16	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0157467_16	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0157467_18	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0157467_18	Structural annotation	PF13620, NF040788, COG2512	NA	NA
UHGV-0157467_19	PHROG	phrog_18725	NA	unknown function
UHGV-0157467_19	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-0157467_19	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0157467_20	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-0157467_20	PHROG	phrog_11157	NA	unknown function
UHGV-0157467_20	UniRef90	UniRef90_UPI001C10C6DC	Ig-like domain-containing protein	NA
UHGV-0157467_20	eggNOG-mapper	476272.RUMHYD_02867	NA	NA
UHGV-0157467_20	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0157467_20	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0157467_20	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0157467_20	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0157467_22	PHROG	phrog_13879	NA	unknown function
UHGV-0157467_22	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-0157467_22	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-0157467_23	eggNOG-mapper	1235797.C816_02660	NA	NA
UHGV-0157467_23	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0157467_24	PHROG	phrog_23464	NA	unknown function
UHGV-0157467_24	UniRef90	UniRef90_UPI00189782F4	phage tail protein	NA
UHGV-0157467_24	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0157467_24	COG	COG5412	Phage-related protein	NA
UHGV-0157467_24	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0157467_25	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-0157467_26	PHROG	phrog_88	major tail protein	tail
UHGV-0157467_26	COG	COG5492	NA	NA
UHGV-0157467_26	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0157467_27	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-0157467_27	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0157467_27	Structural annotation	TIGR01725	NA	NA
UHGV-0157467_28	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-0157467_28	Structural annotation	PF05657	NA	NA
UHGV-0157467_29	PHROG	phrog_25	head closure Hc1	connector
UHGV-0157467_29	UniRef90	UniRef90_A0A845R2W2	Head-tail adaptor protein	NA
UHGV-0157467_29	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0157467_29	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0157467_29	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0157467_29	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0157467_30	UniRef90	UniRef90_UPI0002DDE99A	head-tail connector protein	NA
UHGV-0157467_30	eggNOG-mapper	1007096.BAGW01000033_gene1600	NA	NA
UHGV-0157467_30	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0157467_30	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0157467_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-0157467_31	UniRef90	UniRef90_UPI001BB4749F	phage major capsid protein	NA
UHGV-0157467_31	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0157467_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0157467_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0157467_31	Structural annotation	PF05065, PF14182, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0157467_32	PHROG	phrog_16951	NA	unknown function
UHGV-0157467_32	eggNOG-mapper	742738.HMPREF9460_04070	NA	NA
UHGV-0157467_32	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0157467_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-0157467_33	UniRef90	UniRef90_UPI0013EF1526	phage portal protein	NA
UHGV-0157467_33	eggNOG-mapper	1007103.AFHW01000142_gene1297	Phage portal protein	NA
UHGV-0157467_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0157467_33	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0157467_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0157467_33	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0157467_35	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0157467_35	UniRef90	UniRef90_UPI0019583763	terminase large subunit	NA
UHGV-0157467_35	eggNOG-mapper	1007096.BAGW01000012_gene2374	Phage Terminase	NA
UHGV-0157467_35	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0157467_35	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0157467_35	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0157467_35	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0157467_36	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0157467_36	UniRef90	UniRef90_UPI001EDE2A13	phage terminase small subunit P27 family	NA
UHGV-0157467_36	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-0157467_36	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0157467_36	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0157467_36	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0157467_36	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0157467_37	PHROG	phrog_21498	NA	unknown function
UHGV-0157467_37	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0157467_37	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0157467_37	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0157467_37	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0157467_37	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0157467_37	Structural annotation	PF02195, PF05869, MF_02015, TIGR00180, TIGR01712, COG1475	NA	NA
UHGV-0157467_38	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0157467_38	UniRef90	UniRef90_UPI001C022B94	HNH endonuclease	NA
UHGV-0157467_38	eggNOG-mapper	693746.OBV_19960	HNH endonuclease	NA
UHGV-0157467_38	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0157467_38	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0157467_38	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0157467_39	UniRef90	UniRef90_UPI001F309B22	cysteine-rich KTR domain-containing protein	NA
UHGV-0157467_39	eggNOG-mapper	742738.HMPREF9460_00868	Cysteine-rich KTR	NA
UHGV-0157467_39	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0157467_39	Structural annotation	PF14205, NF041070	NA	NA
UHGV-0157467_40	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0157467_40	eggNOG-mapper	693746.OBV_19950	NA	NA
UHGV-0157467_40	Structural annotation	PF11726	NA	NA
UHGV-0157467_44	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0157467_44	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0157467_44	eggNOG-mapper	1567010.A0A0A7RU90_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-0157467_44	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0157467_45	PHROG	phrog_10867	NA	unknown function
UHGV-0157467_46	Pfam	PF04448	NA	DUF551
UHGV-0157467_46	Structural annotation	NF041588	NA	NA
UHGV-0157467_48	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0157467_48	PHROG	phrog_27290	NA	unknown function
UHGV-0157467_48	UniRef90	UniRef90_UPI0003130F10	ParB N-terminal domain-containing protein	NA
UHGV-0157467_48	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-0157467_48	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0157467_48	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0157467_48	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0157467_49	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0157467_49	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0157467_49	UniRef90	UniRef90_UPI001C0253FB	ParA family protein	NA
UHGV-0157467_49	eggNOG-mapper	1007096.BAGW01000033_gene1614	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0157467_49	Pfam	PF13614	AAA domain	AAA_31
UHGV-0157467_49	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0157467_49	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0157467_50	PHROG	phrog_27610	NA	unknown function
UHGV-0157467_51	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0157467_51	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0157467_51	UniRef90	UniRef90_UPI00195856D7	AAA family ATPase	NA
UHGV-0157467_51	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0157467_51	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0157467_51	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0157467_51	COG	COG0305	Replicative DNA helicase	NA
UHGV-0157467_51	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0157467_52	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0157467_52	UniRef90	UniRef90_UPI001EE1549C	helix-turn-helix domain-containing protein	NA
UHGV-0157467_52	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-0157467_52	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0157467_52	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-0157467_54	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0157467_54	UniRef90	UniRef90_U2QJH6	DNA-binding helix-turn-helix protein	NA
UHGV-0157467_54	eggNOG-mapper	1226322.HMPREF1545_00092	Helix-turn-helix XRE-family like proteins	NA
UHGV-0157467_54	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0157467_54	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0157467_54	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0157467_55	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0157467_56	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0157467_56	UniRef90	UniRef90_A0A2K9P4T7	Helix-turn-helix domain protein	NA
UHGV-0157467_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0157467_56	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0157467_58	UniRef90	UniRef90_A0A7X3ASF1	XRE family transcriptional regulator	NA
UHGV-0157467_58	eggNOG-mapper	411469.EUBHAL_01994	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0157467_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0157467_58	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0157467_58	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0157467_59	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0157467_59	UniRef90	UniRef90_UPI001A99573C	Ltp family lipoprotein	NA
UHGV-0157467_59	eggNOG-mapper	1120998.AUFC01000030_gene2202	Membrane	NA
UHGV-0157467_59	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-0157467_59	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0157467_59	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0157467_60	KOfam	K14059	int; integrase	NA
UHGV-0157467_60	PHROG	phrog_1	integrase	integration and excision
UHGV-0157467_60	UniRef90	UniRef90_A0A1H8A220	Site-specific recombinase XerD	NA
UHGV-0157467_60	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0157467_60	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0157467_60	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0157467_60	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0157467_60	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0157467_61	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0157467_61	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0157467_63	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0157467_67	UniRef90	UniRef90_A0A8D9PDQ3	ECF sigma factor	NA
UHGV-0157467_68	PHROG	phrog_21357	endolysin	lysis
UHGV-0157467_68	UniRef90	UniRef90_G9YP37	SLH domain-containing protein	NA
UHGV-0157467_68	eggNOG-mapper	243164.DET1070	SMART Glycoside hydrolase, family 25 subgroup	NA
UHGV-0157467_68	Pfam	PF05257	CHAP domain	CHAP
UHGV-0157467_68	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0157467_68	COG	COG1388	LysM repeat	NA
UHGV-0157467_68	Structural annotation	PF10030, TIGR02594, COG3942	NA	NA
UHGV-0157467_69	PHROG	phrog_13256	NA	unknown function
UHGV-0157467_69	eggNOG-mapper	1160721.RBI_II00522	NA	NA
UHGV-0157467_70	UniRef90	UniRef90_A0A437S4D3	NAGPA domain-containing protein	NA
UHGV-0157467_70	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0157467_71	PHROG	phrog_937	hemolysin	other
UHGV-0157467_71	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0157467_73	eggNOG-mapper	1384065.JAGS01000001_gene2507	domain, Protein	NA
UHGV-0157467_73	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-0157467_73	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA