UHGV-0157488

Genome information

Genome length 34,079 bps

CDS count 60

Completeness 100.00% (complete)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-0157488
vOTU ID	vOTU-001841
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_494581
BioSample	SAMN06110332
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.16
Jumbo phage	No

Genome content
Genome length	34,079 bps
GC content	50.15%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	93.93%
Average CDS length	539.60 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0157488_1	eggNOG-mapper	411483.FAEPRAA2165_03397	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0157488_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0157488_2	eggNOG-mapper	1347392.CCEZ01000043_gene405	NA	NA
UHGV-0157488_3	PHROG	phrog_937	hemolysin	other
UHGV-0157488_3	eggNOG-mapper	1235835.C814_01939	NA	NA
UHGV-0157488_4	PHROG	phrog_27545	NA	unknown function
UHGV-0157488_4	UniRef90	UniRef90_A0A2V2GQB6	Chitin-binding type-3 domain-containing protein	NA
UHGV-0157488_4	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-0157488_4	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0157488_7	PHROG	phrog_29409	NA	unknown function
UHGV-0157488_7	UniRef90	UniRef90_A0A2V2GQ35	Isoaspartyl peptidase	NA
UHGV-0157488_8	PHROG	phrog_37900	NA	unknown function
UHGV-0157488_8	UniRef90	UniRef90_A0A2V2GLK0	NA	NA
UHGV-0157488_8	eggNOG-mapper	552398.HMPREF0866_03098	NA	NA
UHGV-0157488_8	Pfam	PF19789	NA	DUF6273
UHGV-0157488_8	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0157488_8	Structural annotation	PF19789, PF03785	NA	NA
UHGV-0157488_9	KOfam	K10447	KLHL9_13; kelch-like protein 9/13	NA
UHGV-0157488_9	PHROG	phrog_12615	NA	unknown function
UHGV-0157488_9	Pfam	PF13964	Kelch motif	Kelch_6
UHGV-0157488_9	Pfam	PF01344	Kelch motif	Kelch_1
UHGV-0157488_9	Pfam	PF13854	Kelch motif	Kelch_5
UHGV-0157488_9	Structural annotation	PF16472, MF_01195, TIGR03548, COG3055	NA	NA
UHGV-0157488_10	PHROG	phrog_5811	NA	unknown function
UHGV-0157488_10	eggNOG-mapper	665956.HMPREF1032_00105	NA	NA
UHGV-0157488_10	Structural annotation	PF20747, TIGR03353	NA	NA
UHGV-0157488_11	PHROG	phrog_7064	tail protein	tail
UHGV-0157488_11	eggNOG-mapper	665956.HMPREF1032_00106	NA	NA
UHGV-0157488_11	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0157488_11	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-0157488_12	PHROG	phrog_20385	minor tail protein	tail
UHGV-0157488_12	UniRef90	UniRef90_UPI001C013719	phage baseplate protein	NA
UHGV-0157488_12	eggNOG-mapper	411471.SUBVAR_05861	NA	NA
UHGV-0157488_12	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0157488_13	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0157488_13	UniRef90	UniRef90_A0A2V2GLB5	Phage tail tape measure protein	NA
UHGV-0157488_13	eggNOG-mapper	1033743.CAES01000020_gene3130	Phage-related minor tail protein	NA
UHGV-0157488_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0157488_13	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0157488_13	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0157488_13	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0157488_14	PHROG	phrog_709	NA	unknown function
UHGV-0157488_14	eggNOG-mapper	411471.SUBVAR_05858	NA	NA
UHGV-0157488_14	Structural annotation	PF19591	NA	NA
UHGV-0157488_15	PHROG	phrog_88	major tail protein	tail
UHGV-0157488_15	UniRef90	UniRef90_A0A2V2GLL2	Phage tail protein	NA
UHGV-0157488_15	eggNOG-mapper	1226322.HMPREF1545_00121	phage major tail protein, phi13 family	NA
UHGV-0157488_15	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0157488_15	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0157488_16	PHROG	phrog_78	tail terminator	connector
UHGV-0157488_16	UniRef90	UniRef90_U2SBX3	HTH merR-type domain-containing protein	NA
UHGV-0157488_16	eggNOG-mapper	1226322.HMPREF1545_00120	NA	NA
UHGV-0157488_16	Structural annotation	PF20765	NA	NA
UHGV-0157488_17	UniRef90	UniRef90_UPI00073E355A	HK97 gp10 family phage protein	NA
UHGV-0157488_17	eggNOG-mapper	1226322.HMPREF1545_00119	NA	NA
UHGV-0157488_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0157488_17	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0157488_18	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0157488_18	UniRef90	UniRef90_A0A2V2GSS5	Phage head-tail adapter protein	NA
UHGV-0157488_18	eggNOG-mapper	1226322.HMPREF1545_00118	NA	NA
UHGV-0157488_18	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0157488_18	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0157488_19	PHROG	phrog_2550	NA	unknown function
UHGV-0157488_19	UniRef90	UniRef90_UPI001E35E63D	phage head-tail connector protein	NA
UHGV-0157488_19	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0157488_19	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0157488_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-0157488_20	UniRef90	UniRef90_A0A2V2GRA2	Phage major capsid protein	NA
UHGV-0157488_20	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0157488_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0157488_20	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0157488_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0157488_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0157488_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0157488_21	KOfam	K06904	NA	NA
UHGV-0157488_21	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0157488_21	UniRef90	UniRef90_A0A2V2GNJ3	HK97 family phage prohead protease	NA
UHGV-0157488_21	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-0157488_21	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0157488_21	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0157488_21	COG	COG3740	Phage head maturation protease	NA
UHGV-0157488_21	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0157488_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-0157488_22	UniRef90	UniRef90_A0A2V2GQD5	Phage portal protein	NA
UHGV-0157488_22	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0157488_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0157488_22	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0157488_22	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0157488_22	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0157488_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0157488_23	UniRef90	UniRef90_A0A2V2GQ67	Terminase	NA
UHGV-0157488_23	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0157488_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0157488_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0157488_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0157488_23	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0157488_24	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0157488_24	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0157488_24	eggNOG-mapper	1329516.JPST01000017_gene431	Phage terminase, small subunit	NA
UHGV-0157488_24	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0157488_24	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0157488_24	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0157488_25	PHROG	phrog_21498	NA	unknown function
UHGV-0157488_25	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0157488_25	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0157488_25	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0157488_25	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0157488_26	PHROG	phrog_7339	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0157488_26	UniRef90	UniRef90_A0A2V2GLL9	Metallophos_2 domain-containing protein	NA
UHGV-0157488_26	eggNOG-mapper	1150474.JQJI01000006_gene784	metallophosphoesterase	NA
UHGV-0157488_26	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0157488_26	COG	COG1408	Predicted phosphohydrolase, MPP superfamily	NA
UHGV-0157488_26	Structural annotation	PF12850, MF_00325, NF003118, COG1311	NA	NA
UHGV-0157488_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0157488_28	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0157488_28	Pfam	PF07374	NA	DUF1492
UHGV-0157488_28	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0157488_33	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0157488_33	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0157488_33	UniRef90	UniRef90_A0A1C6E635	Methyltransferase	NA
UHGV-0157488_33	eggNOG-mapper	1329516.JPST01000005_gene1303	DNA methylase	NA
UHGV-0157488_33	PADLOC	MTase_II_00173	Type II methyltransferase	RM
UHGV-0157488_33	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0157488_33	COG	COG0863	DNA modification methylase	NA
UHGV-0157488_33	Structural annotation	PF01555, NF008572, COG0863	NA	NA
UHGV-0157488_35	PHROG	phrog_3136	NA	unknown function
UHGV-0157488_35	UniRef90	UniRef90_UPI001C26B029	ASCH domain-containing protein	NA
UHGV-0157488_35	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0157488_38	Structural annotation	TIGR04381	NA	NA
UHGV-0157488_40	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0157488_40	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0157488_40	UniRef90	UniRef90_A0A2V2GLN0	DNA methyltransferase (Fragment)	NA
UHGV-0157488_40	eggNOG-mapper	622312.ROSEINA2194_01264	C-5 cytosine-specific DNA methylase	NA
UHGV-0157488_40	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0157488_40	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0157488_40	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0157488_41	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0157488_41	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0157488_41	UniRef90	UniRef90_UPI00131A3D1F	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0157488_41	eggNOG-mapper	1226322.HMPREF1545_04070	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0157488_41	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0157488_41	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0157488_42	PHROG	phrog_9804	NA	unknown function
UHGV-0157488_42	UniRef90	UniRef90_UPI001E312ACC	replicative helicase loader/inhibitor	NA
UHGV-0157488_42	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0157488_42	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0157488_42	Structural annotation	PF11417	NA	NA
UHGV-0157488_43	PHROG	phrog_9474	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0157488_43	UniRef90	UniRef90_A0A8B3R1H0	Phage replication protein	NA
UHGV-0157488_43	eggNOG-mapper	742740.HMPREF9474_03117	NA	NA
UHGV-0157488_43	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-0157488_44	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0157488_44	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0157488_44	UniRef90	UniRef90_UPI001E2A5A6F	single-stranded DNA-binding protein	NA
UHGV-0157488_44	eggNOG-mapper	1235835.C814_01372	Single-stranded DNA-binding protein	NA
UHGV-0157488_44	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0157488_44	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0157488_44	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0157488_44	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0157488_44	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0157488_45	PHROG	phrog_7566	NA	unknown function
UHGV-0157488_45	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0157488_46	PHROG	phrog_1389	NA	unknown function
UHGV-0157488_46	eggNOG-mapper	883156.HMPREF9282_01223	NA	NA
UHGV-0157488_46	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0157488_47	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0157488_47	UniRef90	UniRef90_UPI001E5A6693	NA	NA
UHGV-0157488_47	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-0157488_47	Pfam	PF06378	NA	DUF1071
UHGV-0157488_47	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0157488_51	Structural annotation	NF041588	NA	NA
UHGV-0157488_52	UniRef90	UniRef90_UPI001E431871	helix-turn-helix transcriptional regulator	NA
UHGV-0157488_52	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0157488_55	UniRef90	UniRef90_UPI0018995761	helix-turn-helix transcriptional regulator	NA
UHGV-0157488_55	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0157488_56	UniRef90	UniRef90_UPI001E54DE4F	helix-turn-helix domain-containing protein	NA
UHGV-0157488_57	UniRef90	UniRef90_UPI001E2EC555	helix-turn-helix domain-containing protein	NA
UHGV-0157488_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0157488_57	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-0157488_59	KOfam	K14059	int; integrase	NA
UHGV-0157488_59	PHROG	phrog_1	integrase	integration and excision
UHGV-0157488_59	UniRef90	UniRef90_UPI001E298856	site-specific integrase	NA
UHGV-0157488_59	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0157488_59	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0157488_59	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0157488_59	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0157488_60	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0157488_60	PHROG	phrog_15001	endolysin	lysis
UHGV-0157488_60	UniRef90	UniRef90_A0A8D9UHF0	PGRP protein	NA
UHGV-0157488_60	eggNOG-mapper	411483.FAEPRAA2165_03397	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0157488_60	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0157488_60	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA