UHGV-0157633

Genome information

Genome length 25,329 bps

CDS count 40

Completeness 99.90% (high-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-0157633
vOTU ID	vOTU-064703
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_470808
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.74
Jumbo phage	No

Genome content
Genome length	25,329 bps
GC content	41.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	91.90%
Average CDS length	584.78 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0157633_1	UniRef90	UniRef90_A0A374N9Y2	NA	NA
UHGV-0157633_1	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0157633_1	Structural annotation	PF10651, NF040788	NA	NA
UHGV-0157633_2	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0157633_2	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-0157633_2	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0157633_2	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0157633_2	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0157633_2	COG	COG4926	Phage-related protein	NA
UHGV-0157633_2	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0157633_3	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0157633_3	eggNOG-mapper	1246.JMEA01000006_gene51	phage tail	NA
UHGV-0157633_3	COG	COG4722	Phage-related protein YomH	NA
UHGV-0157633_3	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0157633_4	PHROG	phrog_23464	NA	unknown function
UHGV-0157633_4	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0157633_4	COG	COG5283	Phage-related tail protein	NA
UHGV-0157633_4	Structural annotation	COG3941	NA	NA
UHGV-0157633_6	PHROG	phrog_1021	NA	unknown function
UHGV-0157633_6	eggNOG-mapper	1321778.HMPREF1982_03556	NA	NA
UHGV-0157633_7	PHROG	phrog_885	major tail protein	tail
UHGV-0157633_7	UniRef90	UniRef90_A0A3D3W9F4	CBM_X2 domain-containing protein	NA
UHGV-0157633_7	eggNOG-mapper	1321814.HMPREF9089_00935	NA	NA
UHGV-0157633_7	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0157633_8	Structural annotation	PF12691	NA	NA
UHGV-0157633_9	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-0157633_9	eggNOG-mapper	1414720.CBYM010000040_gene1650	NA	NA
UHGV-0157633_9	Structural annotation	TIGR01725	NA	NA
UHGV-0157633_10	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0157633_10	UniRef90	UniRef90_A0A374MZF9	Phage head-tail adapter protein	NA
UHGV-0157633_10	eggNOG-mapper	1414720.CBYM010000040_gene1649	head-tail adaptor	NA
UHGV-0157633_10	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0157633_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0157633_11	PHROG	phrog_5223	neck protein	connector
UHGV-0157633_11	eggNOG-mapper	931626.Awo_c31020	NA	NA
UHGV-0157633_11	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0157633_11	Structural annotation	TIGR01560	NA	NA
UHGV-0157633_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-0157633_12	UniRef90	UniRef90_A0A374N9V9	Phage major capsid protein	NA
UHGV-0157633_12	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0157633_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0157633_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0157633_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0157633_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0157633_13	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0157633_13	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0157633_13	UniRef90	UniRef90_A0A374NBM3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0157633_13	eggNOG-mapper	1203606.HMPREF1526_00979	Belongs to the peptidase S14 family	NA
UHGV-0157633_13	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0157633_13	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0157633_13	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0157633_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-0157633_14	UniRef90	UniRef90_A0A374NAE1	Phage portal protein	NA
UHGV-0157633_14	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0157633_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0157633_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0157633_14	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0157633_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0157633_15	UniRef90	UniRef90_A0A374NB45	Terminase large subunit	NA
UHGV-0157633_15	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-0157633_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0157633_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0157633_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0157633_15	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0157633_16	PHROG	phrog_1066	NA	unknown function
UHGV-0157633_16	UniRef90	UniRef90_A0A0D0SQQ8	NA	NA
UHGV-0157633_16	eggNOG-mapper	1203606.HMPREF1526_00982	NA	NA
UHGV-0157633_17	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0157633_17	UniRef90	UniRef90_A0A374N9T6	HNH endonuclease	NA
UHGV-0157633_17	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-0157633_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0157633_18	UniRef90	UniRef90_A0A374MXG7	XRE family transcriptional regulator	NA
UHGV-0157633_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0157633_24	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0157633_24	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0157633_24	UniRef90	UniRef90_A0A1C6JHY9	DNA helicase	NA
UHGV-0157633_24	eggNOG-mapper	1280689.AUJC01000011_gene1502	Participates in initiation and elongation during chromosome replication	NA
UHGV-0157633_24	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0157633_24	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0157633_24	COG	COG0305	Replicative DNA helicase	NA
UHGV-0157633_24	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0157633_25	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0157633_25	UniRef90	UniRef90_UPI00188CCFE8	Lrp/AsnC family transcriptional regulator	NA
UHGV-0157633_25	eggNOG-mapper	445974.CLORAM_02950	NA	NA
UHGV-0157633_25	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0157633_26	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0157633_26	UniRef90	UniRef90_UPI000C0868DD	ERCC4 domain-containing protein	NA
UHGV-0157633_26	eggNOG-mapper	476272.RUMHYD_01740	ERCC4 domain	NA
UHGV-0157633_26	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0157633_26	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0157633_26	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0157633_27	PHROG	phrog_18107	NA	unknown function
UHGV-0157633_27	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0157633_27	Structural annotation	PF05037	NA	NA
UHGV-0157633_28	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0157633_28	UniRef90	UniRef90_UPI000C080C89	ATP-binding protein	NA
UHGV-0157633_28	eggNOG-mapper	1415774.U728_1119	AAA domain	NA
UHGV-0157633_28	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0157633_30	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0157633_30	UniRef90	UniRef90_UPI001C01CFF8	SANT/Myb domain-containing protein	NA
UHGV-0157633_30	eggNOG-mapper	394503.Ccel_3305	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0157633_30	Pfam	PF13921	Myb-like DNA-binding domain	Myb_DNA-bind_6
UHGV-0157633_30	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0157633_30	Structural annotation	PF11112, NF040595	NA	NA
UHGV-0157633_32	UniRef90	UniRef90_A0A2N0ULT9	DNA binding domain, excisionase family	NA
UHGV-0157633_32	eggNOG-mapper	1283300.ATXB01000001_gene1737	DNA excision	NA
UHGV-0157633_32	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0157633_32	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0157633_32	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0157633_32	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0157633_33	PHROG	phrog_5765	NA	unknown function
UHGV-0157633_33	UniRef90	UniRef90_A0A374ND95	BC1881 family protein	NA
UHGV-0157633_33	eggNOG-mapper	926692.AZYG01000059_gene90	NA	NA
UHGV-0157633_33	NCBIFam	NF033495.1	BC1881 family protein	NA
UHGV-0157633_34	UniRef90	UniRef90_UPI0015F48AC0	Lar family restriction alleviation protein	NA
UHGV-0157633_35	PHROG	phrog_8684	NA	unknown function
UHGV-0157633_35	UniRef90	UniRef90_UPI000E48855B	YopX family protein	NA
UHGV-0157633_35	eggNOG-mapper	1234679.BN424_2637	YopX protein	NA
UHGV-0157633_35	Pfam	PF09643	YopX protein	YopX
UHGV-0157633_35	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0157633_35	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0157633_36	UniRef90	UniRef90_A0A374DVN3	DNA-binding protein	NA
UHGV-0157633_36	eggNOG-mapper	1219626.HMPREF1639_07045	NA	NA
UHGV-0157633_37	UniRef90	UniRef90_A0A373XLN2	XRE family transcriptional regulator	NA
UHGV-0157633_37	eggNOG-mapper	1235793.C809_00679	Helix-turn-helix XRE-family like proteins	NA
UHGV-0157633_37	Structural annotation	PF05339, NF007257, COG3655	NA	NA
UHGV-0157633_38	PHROG	phrog_1914	NA	unknown function
UHGV-0157633_38	UniRef90	UniRef90_UPI000E543E50	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0157633_38	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0157633_38	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0157633_38	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0157633_38	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0157633_39	UniRef90	UniRef90_A0A374DTF3	NA	NA
UHGV-0157633_40	KOfam	K14059	int; integrase	NA
UHGV-0157633_40	PHROG	phrog_1	integrase	integration and excision
UHGV-0157633_40	UniRef90	UniRef90_A0A373XME4	Site-specific integrase	NA
UHGV-0157633_40	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-0157633_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0157633_40	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0157633_40	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA