UHGV-0157671

Genome information

Genome length 32,647 bps

CDS count 49

Completeness 100.00% (complete)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-0157671
vOTU ID	vOTU-002490
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_460195
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	71.02
Jumbo phage	No

Genome content
Genome length	32,647 bps
GC content	39.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	90.85%
Average CDS length	607.22 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0157671_1	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0157671_1	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0157671_1	UniRef90	UniRef90_UPI000B58D916	DNA cytosine methyltransferase	NA
UHGV-0157671_1	eggNOG-mapper	888049.HMPREF8578_0275	C-5 cytosine-specific DNA methylase	NA
UHGV-0157671_1	PADLOC	MTase_II_00072	Type II methyltransferase	RM
UHGV-0157671_1	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0157671_1	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0157671_1	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0157671_1	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0157671_2	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0157671_2	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0157671_2	UniRef90	UniRef90_A0A7X2X333	Single-stranded DNA-binding protein	NA
UHGV-0157671_2	eggNOG-mapper	768726.HMPREF9178_1078	Single-strand binding protein family	NA
UHGV-0157671_2	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0157671_2	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0157671_2	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0157671_2	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0157671_2	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0157671_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0157671_4	UniRef90	UniRef90_A0A4D6B234	HTH cro/C1-type domain-containing protein	NA
UHGV-0157671_4	Structural annotation	PF01381, MF_00535, NF041575, COG3655	NA	NA
UHGV-0157671_5	PHROG	phrog_236	nucleotide kinase	other
UHGV-0157671_5	UniRef90	UniRef90_UPI0019553FA4	NA	NA
UHGV-0157671_5	eggNOG-mapper	1403946.Q615_SPAC00127G0145	NA	NA
UHGV-0157671_5	Pfam	PF11753	NA	DUF3310
UHGV-0157671_6	PHROG	phrog_1992	MazG-like pyrophosphatase	other
UHGV-0157671_6	UniRef90	UniRef90_A0A4D6B3B6	DNA-binding protein	NA
UHGV-0157671_6	eggNOG-mapper	585203.SMSK564_1297	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0157671_6	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0157671_6	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0157671_7	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0157671_7	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0157671_7	UniRef90	UniRef90_A0A4D6B4J6	DNA helicase loader	NA
UHGV-0157671_7	eggNOG-mapper	888049.HMPREF8578_0284	DNA-dependent DNA replication	NA
UHGV-0157671_7	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0157671_7	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0157671_7	Structural annotation	PF01695, MF_00377, NF005931, COG1484	NA	NA
UHGV-0157671_8	PHROG	phrog_1163	NA	unknown function
UHGV-0157671_8	UniRef90	UniRef90_A0A7X2X364	DnaD domain protein	NA
UHGV-0157671_8	eggNOG-mapper	1214184.ALKY01000039_gene945	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0157671_8	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0157671_8	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0157671_8	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0157671_8	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0157671_8	Structural annotation	PF09681, PF09524, TIGR01714, TIGR02220, COG0640	NA	NA
UHGV-0157671_9	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0157671_9	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0157671_9	UniRef90	UniRef90_A0A7X2X3C2	Replicative DNA helicase	NA
UHGV-0157671_9	eggNOG-mapper	1123314.AUIO01000016_gene818	Participates in initiation and elongation during chromosome replication	NA
UHGV-0157671_9	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0157671_9	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0157671_9	NCBIFam	NF004384.0	replicative DNA helicase	NA
UHGV-0157671_9	COG	COG0305	Replicative DNA helicase	NA
UHGV-0157671_9	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0157671_11	PHROG	phrog_2113	NA	unknown function
UHGV-0157671_11	UniRef90	UniRef90_A0A6A8V8C7	HTH_11 domain-containing protein	NA
UHGV-0157671_11	eggNOG-mapper	764299.STRIC_2517	NA	NA
UHGV-0157671_11	Structural annotation	PF11994, MF_01177, TIGR02944, COG1959	NA	NA
UHGV-0157671_12	PHROG	phrog_5866	NA	unknown function
UHGV-0157671_12	UniRef90	UniRef90_A0A7X3BPB2	HTH merR-type domain-containing protein	NA
UHGV-0157671_12	eggNOG-mapper	35344.A0A097PAT8_BPT12	NA	NA
UHGV-0157671_12	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0157671_13	UniRef90	UniRef90_K8MJ75	HTH cro/C1-type domain-containing protein	NA
UHGV-0157671_13	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA
UHGV-0157671_14	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0157671_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0157671_14	UniRef90	UniRef90_A0A4Q2FDD8	XRE family transcriptional regulator	NA
UHGV-0157671_14	eggNOG-mapper	999425.HMPREF9186_01999	Transcriptional regulator	NA
UHGV-0157671_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0157671_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0157671_14	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0157671_15	PHROG	phrog_87	metallo-protease	other
UHGV-0157671_15	UniRef90	UniRef90_A0A4D6A8I2	Peptidase_M78 domain-containing protein	NA
UHGV-0157671_15	eggNOG-mapper	173707.Q938N7_9CAUD	Pfam:Peptidase_M78	NA
UHGV-0157671_15	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0157671_15	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0157671_16	UniRef90	UniRef90_F5VYS8	Conserved domain protein	NA
UHGV-0157671_17	KOfam	K14059	int; integrase	NA
UHGV-0157671_17	PHROG	phrog_1	integrase	integration and excision
UHGV-0157671_17	UniRef90	UniRef90_A0A4D6B4Y3	Integrase	NA
UHGV-0157671_17	eggNOG-mapper	999425.HMPREF9186_01996	Belongs to the 'phage' integrase family	NA
UHGV-0157671_17	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0157671_17	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0157671_17	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0157671_17	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0157671_17	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0157671_18	PHROG	phrog_1529	NA	unknown function
UHGV-0157671_18	eggNOG-mapper	1120978.KB894081_gene184	NA	NA
UHGV-0157671_18	Structural annotation	PF01381, TIGR02607, COG3655	NA	NA
UHGV-0157671_19	PHROG	phrog_1309	endolysin	lysis
UHGV-0157671_19	UniRef90	UniRef90_A0A1F1CHN7	Peptidase C51 domain-containing protein	NA
UHGV-0157671_19	eggNOG-mapper	403905.A7J2B5_9CAUD	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0157671_19	Pfam	PF05257	CHAP domain	CHAP
UHGV-0157671_19	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-0157671_19	Structural annotation	PF00877, NF008096, COG3942	NA	NA
UHGV-0157671_20	PHROG	phrog_608	holin	lysis
UHGV-0157671_20	UniRef90	UniRef90_UPI00189AA344	phage holin	NA
UHGV-0157671_20	eggNOG-mapper	585203.SMSK564_1272	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0157671_20	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0157671_20	NCBIFam	TIGR01673.1	phage holin	NA
UHGV-0157671_21	PHROG	phrog_199	holin	lysis
UHGV-0157671_21	UniRef90	UniRef90_UPI00189BBF3C	phage holin family protein	NA
UHGV-0157671_21	eggNOG-mapper	1051631.F8HGP0_9CAUD	Pfam:Phage_holin_4_1	NA
UHGV-0157671_21	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0157671_21	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0157671_21	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0157671_22	PHROG	phrog_1554	NA	unknown function
UHGV-0157671_22	UniRef90	UniRef90_A0A4V0EM35	NA	NA
UHGV-0157671_22	eggNOG-mapper	1005705.HMPREF9967_1055	NA	NA
UHGV-0157671_22	Structural annotation	PF07104	NA	NA
UHGV-0157671_24	PHROG	phrog_2189	tail protein	tail
UHGV-0157671_24	UniRef90	UniRef90_UPI000779AC96	phage tail protein	NA
UHGV-0157671_24	eggNOG-mapper	1316408.HSISM1_1246	Phage minor structural protein	NA
UHGV-0157671_24	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0157671_24	COG	COG1511	NA	NA
UHGV-0157671_24	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0157671_25	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0157671_25	UniRef90	UniRef90_UPI001CC00BD7	phage tail protein	NA
UHGV-0157671_25	eggNOG-mapper	1316408.HSISM1_1245	NA	NA
UHGV-0157671_25	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0157671_26	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0157671_26	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-0157671_26	UniRef90	UniRef90_A0A1F0KCN3	Phage tail tape measure protein	NA
UHGV-0157671_26	eggNOG-mapper	1316408.HSISM1_1244	Phage tail tape measure protein	NA
UHGV-0157671_26	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0157671_26	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0157671_26	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0157671_27	PHROG	phrog_709	NA	unknown function
UHGV-0157671_27	UniRef90	UniRef90_A0A0E4CSV4	Prophage pi2 protein 40	NA
UHGV-0157671_27	eggNOG-mapper	1316408.HSISM1_1243	NA	NA
UHGV-0157671_27	Structural annotation	PF11836	NA	NA
UHGV-0157671_28	PHROG	phrog_88	major tail protein	tail
UHGV-0157671_28	UniRef90	UniRef90_T0U4F0	Phage major tail protein	NA
UHGV-0157671_28	eggNOG-mapper	1316408.HSISM1_1242	phage major tail protein, phi13 family	NA
UHGV-0157671_28	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0157671_28	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0157671_29	PHROG	phrog_78	tail terminator	connector
UHGV-0157671_29	UniRef90	UniRef90_T0U477	Prophage pi2 protein 38	NA
UHGV-0157671_29	eggNOG-mapper	1316408.HSISM1_1241	NA	NA
UHGV-0157671_29	Structural annotation	PF20765	NA	NA
UHGV-0157671_30	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0157671_30	UniRef90	UniRef90_A0A414CIF4	HK97 gp10 family phage protein	NA
UHGV-0157671_30	eggNOG-mapper	1316408.HSISM1_1058	NA	NA
UHGV-0157671_30	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0157671_30	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0157671_31	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0157671_31	UniRef90	UniRef90_A0A414CIH3	Phage head closure protein	NA
UHGV-0157671_31	eggNOG-mapper	1316408.HSISM1_1057	Phage head-tail joining protein	NA
UHGV-0157671_31	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0157671_31	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0157671_31	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0157671_32	PHROG	phrog_2550	NA	unknown function
UHGV-0157671_32	UniRef90	UniRef90_T0U4H0	Orf46	NA
UHGV-0157671_32	eggNOG-mapper	644007.C5J965_9CAUD	Phage gp6-like head-tail connector protein	NA
UHGV-0157671_32	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0157671_33	PHROG	phrog_3673	Arc-like repressor	transcription regulation
UHGV-0157671_33	UniRef90	UniRef90_A0A0P0N6K2	Phage transcriptional terminator	NA
UHGV-0157671_34	PHROG	phrog_10	major head protein	head and packaging
UHGV-0157671_34	UniRef90	UniRef90_UPI001CC02CCF	phage major capsid protein	NA
UHGV-0157671_34	eggNOG-mapper	1123314.AUIO01000016_gene840	capsid protein	NA
UHGV-0157671_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0157671_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0157671_34	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0157671_34	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0157671_35	KOfam	K06904	NA	NA
UHGV-0157671_35	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0157671_35	UniRef90	UniRef90_A0A414CJ71	HK97 family phage prohead protease	NA
UHGV-0157671_35	eggNOG-mapper	1316408.HSISM1_1053	Caudovirus prohead serine protease	NA
UHGV-0157671_35	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0157671_35	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0157671_35	COG	COG3740	Phage head maturation protease	NA
UHGV-0157671_35	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0157671_36	PHROG	phrog_12	portal protein	head and packaging
UHGV-0157671_36	UniRef90	UniRef90_A0A4D6B580	Portal (Connector) protein	NA
UHGV-0157671_36	eggNOG-mapper	1316408.HSISM1_1052	Phage portal protein	NA
UHGV-0157671_36	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0157671_36	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0157671_36	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0157671_36	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0157671_37	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0157671_37	UniRef90	UniRef90_A0A7G1JM49	Terminase	NA
UHGV-0157671_37	eggNOG-mapper	1316408.HSISM1_1051	Terminase	NA
UHGV-0157671_37	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0157671_37	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0157671_37	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0157671_37	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0157671_38	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0157671_38	UniRef90	UniRef90_A0A414CIM9	POU-specific domain-containing protein	NA
UHGV-0157671_38	eggNOG-mapper	1316408.HSISM1_1050	Phage terminase, small subunit	NA
UHGV-0157671_38	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0157671_38	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0157671_38	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0157671_39	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0157671_39	UniRef90	UniRef90_A0A062WSH4	Bacteriophage nuclease	NA
UHGV-0157671_39	eggNOG-mapper	888049.HMPREF8578_0692	endonuclease activity	NA
UHGV-0157671_39	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0157671_40	PHROG	phrog_6716	NA	unknown function
UHGV-0157671_40	UniRef90	UniRef90_A0A0X8UVP8	3-dehydroquinate synthase	NA
UHGV-0157671_41	PHROG	phrog_35353	NA	unknown function
UHGV-0157671_41	Structural annotation	PF11305, MF_01360, NF010236	NA	NA
UHGV-0157671_42	PHROG	phrog_121	NA	unknown function
UHGV-0157671_42	UniRef90	UniRef90_A0A6I3PUP0	NA	NA
UHGV-0157671_42	eggNOG-mapper	365659.smi_0429	NA	NA
UHGV-0157671_42	Pfam	PF07852	NA	DUF1642
UHGV-0157671_42	Structural annotation	PF07852	NA	NA
UHGV-0157671_43	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0157671_43	PHROG	phrog_216	integrase	integration and excision
UHGV-0157671_43	UniRef90	UniRef90_A0A4D6B299	Site-specific recombinase	NA
UHGV-0157671_43	eggNOG-mapper	644007.C5J955_9CAUD	Phage integrase family	NA
UHGV-0157671_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0157671_43	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0157671_44	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0157671_44	UniRef90	UniRef90_UPI001C8C424D	transcriptional regulator	NA
UHGV-0157671_44	eggNOG-mapper	873447.SPB_0690	Transcriptional regulator, RinA family	NA
UHGV-0157671_44	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0157671_45	PHROG	phrog_29132	NA	unknown function
UHGV-0157671_47	PHROG	phrog_98	NA	unknown function
UHGV-0157671_47	UniRef90	UniRef90_A0A0A0YV57	YopX domain-containing protein	NA
UHGV-0157671_47	eggNOG-mapper	1005705.HMPREF9967_1029	YopX protein	NA
UHGV-0157671_47	Pfam	PF09643	YopX protein	YopX
UHGV-0157671_47	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0157671_48	UniRef90	UniRef90_F9PY74	Conserved domain protein	NA
UHGV-0157671_49	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0157671_49	PHROG	phrog_26324	DNA methyltransferase	other
UHGV-0157671_49	UniRef90	UniRef90_A0A4D6B0W3	Cytosine-specific methyltransferase	NA
UHGV-0157671_49	eggNOG-mapper	1566990.A0A0A0YQS0_9CAUD	C-5 cytosine-specific DNA methylase	NA
UHGV-0157671_49	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0157671_49	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0157671_49	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA