UHGV-0157709

Genome information

Genome length 34,100 bps

CDS count 60

Completeness 100.00% (complete)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0157709
vOTU ID	vOTU-046251
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_462761
BioSample	SAMN06112009
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.67
Jumbo phage	No

Genome content
Genome length	34,100 bps
GC content	44.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	91.53%
Average CDS length	525.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0157709_1	KOfam	K07273	acm; lysozyme	NA
UHGV-0157709_1	PHROG	phrog_291	endolysin	lysis
UHGV-0157709_1	UniRef90	UniRef90_A0A1C6ERW8	Autolytic lysozyme	NA
UHGV-0157709_1	eggNOG-mapper	428125.CLOLEP_00561	Glycosyl hydrolases family 25	NA
UHGV-0157709_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0157709_1	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0157709_1	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0157709_1	Structural annotation	PF01183, PF01476, TIGR02899, NF007360, COG3757, COG1388	NA	NA
UHGV-0157709_2	UniRef90	UniRef90_R6NDD3	Glycosyl hydrolase family 25	NA
UHGV-0157709_2	Structural annotation	PF02796, COG2771	NA	NA
UHGV-0157709_3	PHROG	phrog_7121	tail fiber protein	tail
UHGV-0157709_3	UniRef90	UniRef90_A7VT91	Peptidase S74 domain-containing protein	NA
UHGV-0157709_3	eggNOG-mapper	428125.CLOLEP_00172	COG COG5295 Autotransporter adhesin	NA
UHGV-0157709_3	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0157709_4	eggNOG-mapper	428125.CLOLEP_00173	NA	NA
UHGV-0157709_4	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0157709_5	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0157709_5	UniRef90	UniRef90_A7VT93	Phage tail tape measure protein, TP901 family	NA
UHGV-0157709_5	eggNOG-mapper	428125.CLOLEP_01785	tail tape measure protein, TP901	NA
UHGV-0157709_5	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0157709_5	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0157709_5	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0157709_6	PHROG	phrog_706	NA	unknown function
UHGV-0157709_6	UniRef90	UniRef90_A7VNQ0	Bacteriophage Gp15 protein	NA
UHGV-0157709_6	eggNOG-mapper	428125.CLOLEP_00176	Bacteriophage Gp15 protein	NA
UHGV-0157709_6	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0157709_6	Structural annotation	PF06854	NA	NA
UHGV-0157709_7	Structural annotation	PF10666	NA	NA
UHGV-0157709_8	PHROG	phrog_820	major tail protein	tail
UHGV-0157709_8	UniRef90	UniRef90_A0A3A6EPU8	S-l_SbsC_C domain-containing protein	NA
UHGV-0157709_8	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0157709_8	COG	COG5492	NA	NA
UHGV-0157709_8	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0157709_9	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0157709_9	Structural annotation	PF12691	NA	NA
UHGV-0157709_10	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0157709_10	UniRef90	UniRef90_UPI000C857E2C	minor capsid protein	NA
UHGV-0157709_10	eggNOG-mapper	428125.CLOLEP_00180	Minor capsid protein	NA
UHGV-0157709_10	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0157709_11	UniRef90	UniRef90_UPI001D06E7F2	minor capsid protein	NA
UHGV-0157709_11	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0157709_12	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0157709_12	eggNOG-mapper	1161901.I1TLE4_9CAUD	NA	NA
UHGV-0157709_13	PHROG	phrog_422	major head protein	head and packaging
UHGV-0157709_13	UniRef90	UniRef90_A0A316T938	S-l_SbsC_C domain-containing protein	NA
UHGV-0157709_13	eggNOG-mapper	428125.CLOLEP_00183	COG NOG28280 non supervised orthologous group	NA
UHGV-0157709_13	Structural annotation	PF19821, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0157709_16	COG	COG0783	DNA-binding ferritin-like protein (oxidative damage protectant)	NA
UHGV-0157709_16	Structural annotation	PF14530, MF_01441, NF009990, COG0783	NA	NA
UHGV-0157709_18	PHROG	phrog_34144	NA	unknown function
UHGV-0157709_18	eggNOG-mapper	938288.HG326225_gene1282	NA	NA
UHGV-0157709_18	Structural annotation	PF20111	NA	NA
UHGV-0157709_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0157709_19	UniRef90	UniRef90_A7VTB0	Phage minor capsid protein 2	NA
UHGV-0157709_19	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0157709_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0157709_19	COG	COG2369	NA	NA
UHGV-0157709_19	Structural annotation	PF06152	NA	NA
UHGV-0157709_20	PHROG	phrog_533	portal protein	head and packaging
UHGV-0157709_20	UniRef90	UniRef90_A7VTB1	Phage minor capsid protein	NA
UHGV-0157709_20	eggNOG-mapper	428125.CLOLEP_01803	NA	NA
UHGV-0157709_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0157709_20	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0157709_20	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0157709_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0157709_21	PHROG	phrog_29775	NA	unknown function
UHGV-0157709_21	UniRef90	UniRef90_A7VTB2	Phage terminase, large subunit, PBSX family	NA
UHGV-0157709_21	eggNOG-mapper	428125.CLOLEP_01804	Phage terminase, large subunit, PBSX family	NA
UHGV-0157709_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0157709_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0157709_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0157709_21	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0157709_22	UniRef90	UniRef90_A7VTB3	Helix-turn-helix domain-containing protein	NA
UHGV-0157709_22	eggNOG-mapper	428125.CLOLEP_01805	NA	NA
UHGV-0157709_22	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0157709_22	Structural annotation	PF13542	NA	NA
UHGV-0157709_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0157709_23	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0157709_23	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0157709_26	Pfam	PF04448	NA	DUF551
UHGV-0157709_30	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0157709_30	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0157709_30	eggNOG-mapper	428125.CLOLEP_01814	COG NOG14118 non supervised orthologous group	NA
UHGV-0157709_30	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0157709_33	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0157709_33	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0157709_33	UniRef90	UniRef90_A0A1C6HG31	Holliday junction resolvase	NA
UHGV-0157709_33	eggNOG-mapper	411461.DORFOR_00015	Endodeoxyribonuclease RusA	NA
UHGV-0157709_33	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0157709_33	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0157709_33	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0157709_34	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0157709_34	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0157709_34	UniRef90	UniRef90_A0A1C6HFV4	DNA replication protein	NA
UHGV-0157709_34	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0157709_34	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0157709_34	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0157709_34	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0157709_35	PHROG	phrog_16304	NA	unknown function
UHGV-0157709_35	UniRef90	UniRef90_A0A1C6HII5	NA	NA
UHGV-0157709_35	eggNOG-mapper	1507.HMPREF0262_00303	DnaD domain protein	NA
UHGV-0157709_35	Pfam	PF19808	NA	DUF6291
UHGV-0157709_35	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0157709_36	PHROG	phrog_2113	NA	unknown function
UHGV-0157709_36	UniRef90	UniRef90_A0A3A6EZF7	HTH domain-containing protein	NA
UHGV-0157709_36	Structural annotation	PF21715	NA	NA
UHGV-0157709_37	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0157709_37	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0157709_37	UniRef90	UniRef90_A7VPP2	Single-stranded DNA-binding protein	NA
UHGV-0157709_37	eggNOG-mapper	428125.CLOLEP_00518	Single-stranded DNA-binding protein	NA
UHGV-0157709_37	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0157709_37	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0157709_37	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0157709_37	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0157709_37	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0157709_38	PHROG	phrog_7566	NA	unknown function
UHGV-0157709_38	eggNOG-mapper	693746.OBV_25470	NA	NA
UHGV-0157709_39	PHROG	phrog_1389	NA	unknown function
UHGV-0157709_39	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-0157709_39	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0157709_40	PHROG	phrog_14970	NA	unknown function
UHGV-0157709_40	UniRef90	UniRef90_UPI00164BFA28	Rad52/Rad22 family DNA repair protein	NA
UHGV-0157709_40	eggNOG-mapper	642492.Clole_0944	double-strand break repair protein	NA
UHGV-0157709_40	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0157709_40	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0157709_40	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0157709_44	PHROG	phrog_1033	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0157709_44	UniRef90	UniRef90_UPI0013716616	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0157709_44	eggNOG-mapper	1042156.CXIVA_10310	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0157709_44	Pfam	PF20188	NA	DUF6551
UHGV-0157709_44	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0157709_44	Structural annotation	PF20188, MF_02015, TIGR04172, COG1475	NA	NA
UHGV-0157709_45	UniRef90	UniRef90_UPI00069FD66F	ParB N-terminal domain-containing protein	NA
UHGV-0157709_45	eggNOG-mapper	556268.OFAG_00312	transposase activity	NA
UHGV-0157709_45	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0157709_45	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0157709_45	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0157709_49	Structural annotation	PF13463, MF_01909, NF033788, COG1846	NA	NA
UHGV-0157709_51	KOfam	K07482	K07482; transposase, IS30 family	NA
UHGV-0157709_51	PHROG	phrog_11420	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0157709_51	UniRef90	UniRef90_A0A412AWF5	Helix-turn-helix domain-containing protein	NA
UHGV-0157709_51	eggNOG-mapper	1519439.JPJG01000077_gene919	Helix-turn-helix domain	NA
UHGV-0157709_51	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0157709_51	Structural annotation	PF04218	NA	NA
UHGV-0157709_52	KOfam	K07482	K07482; transposase, IS30 family	NA
UHGV-0157709_52	PHROG	phrog_4646	transposase	integration and excision
UHGV-0157709_52	UniRef90	UniRef90_R6N1U4	Integrase catalytic domain-containing protein	NA
UHGV-0157709_52	eggNOG-mapper	411459.RUMOBE_01705	COG COG2826 Transposase and inactivated derivatives, IS30 family	NA
UHGV-0157709_52	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0157709_52	NCBIFam	NF033563.0	IS30 family transposase	NA
UHGV-0157709_52	COG	COG2826	Transposase and inactivated derivatives, IS30 family	NA
UHGV-0157709_52	Structural annotation	PF03400, PF13384, NF033563, COG2826	NA	NA
UHGV-0157709_53	UniRef90	UniRef90_R6NCF0	RHH_1 domain-containing protein	NA
UHGV-0157709_53	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0157709_53	Structural annotation	PF01402, NF040976, COG4710	NA	NA
UHGV-0157709_54	AcrCatalog	cluster_160566	NA	NA
UHGV-0157709_56	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0157709_56	UniRef90	UniRef90_R6P7W0	Helix-turn-helix domain-containing protein	NA
UHGV-0157709_56	eggNOG-mapper	1235797.C816_02851	Helix-turn-helix XRE-family like proteins	NA
UHGV-0157709_56	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0157709_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0157709_56	Structural annotation	PF13560, NF041951, COG1813	NA	NA
UHGV-0157709_57	KOfam	K19370	DNAJC22; DnaJ homolog subfamily C member 22	NA
UHGV-0157709_57	PHROG	phrog_10292	NA	unknown function
UHGV-0157709_57	UniRef90	UniRef90_R6NCF6	TM2 domain-containing protein	NA
UHGV-0157709_57	eggNOG-mapper	537013.CLOSTMETH_02269	TM2 domain	NA
UHGV-0157709_57	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0157709_57	Pfam	PF05154	TM2 domain	TM2
UHGV-0157709_57	COG	COG2314	NA	NA
UHGV-0157709_58	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0157709_58	UniRef90	UniRef90_A7VT87	Phage regulatory protein, Rha family	NA
UHGV-0157709_58	eggNOG-mapper	428125.CLOLEP_01779	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0157709_58	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0157709_58	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0157709_58	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0157709_58	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0157709_59	PHROG	phrog_297	holin	lysis
UHGV-0157709_59	UniRef90	UniRef90_A7VT88	Holin, phage phi LC3 family	NA
UHGV-0157709_59	eggNOG-mapper	428125.CLOLEP_00169	COG COG5546 Small integral membrane protein	NA
UHGV-0157709_59	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0157709_59	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0157709_59	COG	COG5546	NA	NA
UHGV-0157709_59	Structural annotation	COG5546	NA	NA
UHGV-0157709_60	PHROG	phrog_937	hemolysin	other
UHGV-0157709_60	eggNOG-mapper	428125.CLOLEP_00170	NA	NA