UHGV-0157721

Genome information

Genome length 38,790 bps

CDS count 56

Completeness 99.90% (high-quality)

geNomad score 0.9699

Prediction confidence Confident

Genome information
Genome ID	UHGV-0157721
vOTU ID	vOTU-010662
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_449790
BioSample	SAMN05971719
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9699
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.78
Jumbo phage	No

Genome content
Genome length	38,790 bps
GC content	39.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	88.57%
Average CDS length	614.89 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0157721_1	UniRef90	UniRef90_S2ZLJ4	HTH cro/C1-type domain-containing protein	NA
UHGV-0157721_1	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-0157721_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0157721_3	eggNOG-mapper	1232453.BAIF02000002_gene1276	NA	NA
UHGV-0157721_3	Structural annotation	PF03869, NF008671, COG4710	NA	NA
UHGV-0157721_5	PHROG	phrog_34107	NA	unknown function
UHGV-0157721_5	eggNOG-mapper	1235800.C819_00521	NA	NA
UHGV-0157721_11	PHROG	phrog_1220	head protein	head and packaging
UHGV-0157721_11	UniRef90	UniRef90_A0A2X0ZY62	Phage structural protein, truncation	NA
UHGV-0157721_11	eggNOG-mapper	1145276.T479_19910	NA	NA
UHGV-0157721_11	Structural annotation	PF20747	NA	NA
UHGV-0157721_12	PHROG	phrog_538	minor tail protein	tail
UHGV-0157721_12	UniRef90	UniRef90_UPI0004813F81	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0157721_12	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0157721_12	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0157721_12	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0157721_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0157721_13	UniRef90	UniRef90_A0A6N7STN1	Phage tail family protein	NA
UHGV-0157721_13	eggNOG-mapper	411460.RUMTOR_01334	COG NOG18823 non supervised orthologous group	NA
UHGV-0157721_13	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0157721_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-0157721_13	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0157721_14	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0157721_14	UniRef90	UniRef90_A0A6N7SRV7	PhageMin_Tail domain-containing protein	NA
UHGV-0157721_14	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-0157721_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0157721_14	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0157721_14	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0157721_16	PHROG	phrog_88	major tail protein	tail
UHGV-0157721_16	UniRef90	UniRef90_A0A843HLZ4	Ig-like domain-containing protein	NA
UHGV-0157721_16	eggNOG-mapper	1246626.BleG1_2876	phage major tail protein, phi13 family	NA
UHGV-0157721_16	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0157721_16	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0157721_16	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0157721_17	Structural annotation	PF05657	NA	NA
UHGV-0157721_18	Structural annotation	TIGR01725	NA	NA
UHGV-0157721_19	PHROG	phrog_25	head closure Hc1	connector
UHGV-0157721_19	UniRef90	UniRef90_R7FBN9	Putative phage head-tail adaptor	NA
UHGV-0157721_19	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-0157721_19	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0157721_19	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0157721_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0157721_20	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0157721_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-0157721_21	UniRef90	UniRef90_UPI00069461CE	phage major capsid protein	NA
UHGV-0157721_21	eggNOG-mapper	1157490.EL26_20710	Phage capsid family	NA
UHGV-0157721_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0157721_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0157721_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0157721_21	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0157721_22	KOfam	K06904	NA	NA
UHGV-0157721_22	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0157721_22	UniRef90	UniRef90_UPI00156EFB92	HK97 family phage prohead protease	NA
UHGV-0157721_22	eggNOG-mapper	927704.SELR_18200	Caudovirus prohead serine protease	NA
UHGV-0157721_22	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0157721_22	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0157721_22	COG	COG3740	Phage head maturation protease	NA
UHGV-0157721_22	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0157721_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-0157721_23	UniRef90	UniRef90_A0A6N2W8E6	Phage portal protein	NA
UHGV-0157721_23	eggNOG-mapper	1157490.EL26_20720	Phage portal protein	NA
UHGV-0157721_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0157721_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0157721_23	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0157721_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0157721_24	UniRef90	UniRef90_UPI00156FA9A2	terminase large subunit	NA
UHGV-0157721_24	eggNOG-mapper	642492.Clole_1855	Phage terminase-like protein large subunit	NA
UHGV-0157721_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0157721_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0157721_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0157721_24	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0157721_26	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0157721_26	UniRef90	UniRef90_A0A6N7SRM8	HNH domain-containing protein	NA
UHGV-0157721_26	eggNOG-mapper	97138.C820_00619	HNH endonuclease	NA
UHGV-0157721_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0157721_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0157721_26	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0157721_27	PHROG	phrog_4636	tail spike protein	tail
UHGV-0157721_27	eggNOG-mapper	1403313.AXBR01000002_gene4314	Hep Hag repeat protein	NA
UHGV-0157721_27	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0157721_27	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0157721_28	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0157721_28	UniRef90	UniRef90_A0A3D0FZE1	Transposase	NA
UHGV-0157721_28	eggNOG-mapper	1408437.JNJN01000045_gene597	HNH endonuclease	NA
UHGV-0157721_28	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0157721_28	Structural annotation	PF07141	NA	NA
UHGV-0157721_29	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-0157721_29	PHROG	phrog_3513	endolysin	lysis
UHGV-0157721_29	UniRef90	UniRef90_A0A3A9T4U3	LYZ2 domain-containing protein	NA
UHGV-0157721_29	eggNOG-mapper	1408324.JNJK01000006_gene1400	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0157721_29	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0157721_29	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0157721_29	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0157721_29	Structural annotation	PF01471, PF01832, NF038016, COG1705, COG3409	NA	NA
UHGV-0157721_30	PHROG	phrog_1863	NA	unknown function
UHGV-0157721_30	eggNOG-mapper	1232453.BAIF02000059_gene1610	NA	NA
UHGV-0157721_31	PHROG	phrog_1129	holin	lysis
UHGV-0157721_31	UniRef90	UniRef90_UPI0013F5D614	phage holin family protein	NA
UHGV-0157721_31	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0157721_31	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0157721_31	Structural annotation	PF06946	NA	NA
UHGV-0157721_32	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0157721_32	UniRef90	UniRef90_S0J8W4	HTH cro/C1-type domain-containing protein	NA
UHGV-0157721_32	eggNOG-mapper	1235790.C805_03092	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0157721_32	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0157721_32	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0157721_32	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0157721_34	UniRef90	UniRef90_R7F9V4	Putative RNA polymerase sigma factor sigma-F	NA
UHGV-0157721_34	eggNOG-mapper	138119.DSY2187	DNA-templated transcription, initiation	NA
UHGV-0157721_34	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0157721_34	Structural annotation	PF06530, NF008895, COG1595	NA	NA
UHGV-0157721_35	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0157721_35	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0157721_35	UniRef90	UniRef90_UPI0008494978	site-specific DNA-methyltransferase	NA
UHGV-0157721_35	eggNOG-mapper	411154.GFO_2469	DNA methylase	NA
UHGV-0157721_35	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0157721_35	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0157721_35	COG	COG0863	DNA modification methylase	NA
UHGV-0157721_35	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0157721_36	eggNOG-mapper	1235798.C817_04576	NA	NA
UHGV-0157721_41	PHROG	phrog_13489	NA	unknown function
UHGV-0157721_41	eggNOG-mapper	1158601.I585_01174	NA	NA
UHGV-0157721_44	PHROG	phrog_4068	NA	unknown function
UHGV-0157721_44	eggNOG-mapper	178901.AmDm5_1358	NA	NA
UHGV-0157721_44	Structural annotation	PF19757, NF038178	NA	NA
UHGV-0157721_45	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0157721_45	PHROG	phrog_15982	NA	unknown function
UHGV-0157721_45	UniRef90	UniRef90_R9K3A6	ParB domain-containing protein	NA
UHGV-0157721_45	eggNOG-mapper	1232453.BAIF02000028_gene2716	ParB-like nuclease domain	NA
UHGV-0157721_45	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0157721_45	Pfam	PF12961	NA	DUF3850
UHGV-0157721_45	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0157721_45	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0157721_46	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0157721_46	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0157721_46	UniRef90	UniRef90_A0A7U9NG21	Chromosome partitioning protein ParA	NA
UHGV-0157721_46	eggNOG-mapper	1235792.C808_00063	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0157721_46	Pfam	PF13614	AAA domain	AAA_31
UHGV-0157721_46	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0157721_46	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0157721_47	UniRef90	UniRef90_UPI00164A90AD	HNH endonuclease	NA
UHGV-0157721_47	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0157721_48	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0157721_48	PHROG	phrog_5889	NA	unknown function
UHGV-0157721_48	UniRef90	UniRef90_A0A1C5UD48	Predicted HD-superfamily hydrolase	NA
UHGV-0157721_48	eggNOG-mapper	1219626.HMPREF1639_07345	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-0157721_48	Pfam	PF01966	HD domain	HD
UHGV-0157721_48	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0157721_48	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-0157721_49	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0157721_49	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0157721_49	UniRef90	UniRef90_A0A3E3J0L4	RNase H type-1 domain-containing protein	NA
UHGV-0157721_49	eggNOG-mapper	411902.CLOBOL_05701	RNase H	NA
UHGV-0157721_49	Pfam	PF00075	RNase H	RNase_H
UHGV-0157721_49	COG	COG0328	Ribonuclease HI	NA
UHGV-0157721_49	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0157721_50	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0157721_50	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0157721_50	eggNOG-mapper	1235798.C817_02593	NA	NA
UHGV-0157721_50	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0157721_52	PHROG	phrog_36464	NA	unknown function
UHGV-0157721_52	UniRef90	UniRef90_R6QN85	50S ribosomal protein L11 domain protein	NA
UHGV-0157721_52	eggNOG-mapper	742740.HMPREF9474_03484	NA	NA
UHGV-0157721_52	Structural annotation	PF09035	NA	NA
UHGV-0157721_54	UniRef90	UniRef90_A0A3A9C4G4	XRE family transcriptional regulator	NA
UHGV-0157721_54	eggNOG-mapper	97139.C824_00059	NA	NA
UHGV-0157721_54	Structural annotation	PF13443, NF010465, COG3655	NA	NA
UHGV-0157721_55	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0157721_55	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0157721_55	UniRef90	UniRef90_A0A7U9S4E0	LexA repressor	NA
UHGV-0157721_55	eggNOG-mapper	1235793.C809_01937	Peptidase S24-like	NA
UHGV-0157721_55	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0157721_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0157721_55	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-0157721_56	KOfam	K14059	int; integrase	NA
UHGV-0157721_56	PHROG	phrog_1	integrase	integration and excision
UHGV-0157721_56	UniRef90	UniRef90_A0A7G9G722	Site-specific integrase	NA
UHGV-0157721_56	eggNOG-mapper	887325.HMPREF0381_0117	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0157721_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0157721_56	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0157721_56	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA