UHGV-0157820

Genome information

Genome length 39,928 bps

CDS count 56

Completeness 99.90% (high-quality)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-0157820
vOTU ID	vOTU-060355
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_490107
BioSample	NA
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.68
Jumbo phage	No

Genome content
Genome length	39,928 bps
GC content	42.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	92.69%
Average CDS length	664.18 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0157820_1	PHROG	phrog_9605	NA	unknown function
UHGV-0157820_1	UniRef90	UniRef90_R5Z4C3	PF12358 family protein	NA
UHGV-0157820_1	eggNOG-mapper	1054460.SPPN_11080	NA	NA
UHGV-0157820_1	Pfam	PF12358	NA	DUF3644
UHGV-0157820_2	PHROG	phrog_9605	NA	unknown function
UHGV-0157820_2	UniRef90	UniRef90_R5ZD98	NA	NA
UHGV-0157820_2	eggNOG-mapper	862971.SANR_1133	NA	NA
UHGV-0157820_2	Pfam	PF12358	NA	DUF3644
UHGV-0157820_2	Pfam	PF18740	EC042_2821-like Restriction Endonuclease-like domain	EC042_2821
UHGV-0157820_2	Structural annotation	PF12358, COG1895	NA	NA
UHGV-0157820_6	Structural annotation	PF19824, TIGR03090	NA	NA
UHGV-0157820_7	PHROG	phrog_1863	NA	unknown function
UHGV-0157820_8	PHROG	phrog_443	holin	lysis
UHGV-0157820_8	UniRef90	UniRef90_UPI001896A9B9	holin	NA
UHGV-0157820_8	eggNOG-mapper	1125712.HMPREF1316_2355	Putative lactococcus lactis phage r1t holin	NA
UHGV-0157820_8	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0157820_8	Structural annotation	PF16945	NA	NA
UHGV-0157820_9	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0157820_10	PHROG	phrog_16490	NA	unknown function
UHGV-0157820_10	eggNOG-mapper	1235790.C805_00060	NA	NA
UHGV-0157820_11	PHROG	phrog_22984	NA	unknown function
UHGV-0157820_12	PHROG	phrog_21718	NA	unknown function
UHGV-0157820_12	UniRef90	UniRef90_A0A8D9PDT7	Membrane fusogenic activity protein	NA
UHGV-0157820_12	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0157820_14	PHROG	phrog_11037	NA	unknown function
UHGV-0157820_14	UniRef90	UniRef90_UPI001D0AE32A	SH3 domain-containing protein	NA
UHGV-0157820_14	eggNOG-mapper	428127.EUBDOL_01569	NA	NA
UHGV-0157820_14	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-0157820_14	Structural annotation	PF08460, PF01551, NF040883, NF033202, COG0739, COG4991	NA	NA
UHGV-0157820_16	PHROG	phrog_19280	NA	unknown function
UHGV-0157820_16	UniRef90	UniRef90_A0A413UF00	NA	NA
UHGV-0157820_16	eggNOG-mapper	1160721.RBI_I01569	NA	NA
UHGV-0157820_16	Pfam	PF19789	NA	DUF6273
UHGV-0157820_16	Structural annotation	PF19789	NA	NA
UHGV-0157820_19	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0157820_19	UniRef90	UniRef90_UPI001D0A6980	fibronectin type III domain-containing protein	NA
UHGV-0157820_19	eggNOG-mapper	555500.I215_02753	Fibronectin type III domain	NA
UHGV-0157820_19	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0157820_19	COG	COG2335	Uncaracterized surface protein containing fasciclin (FAS1) repeats	NA
UHGV-0157820_19	Structural annotation	PF05895, MF_04116, NF010681, COG3401	NA	NA
UHGV-0157820_20	PHROG	phrog_9534	head protein	head and packaging
UHGV-0157820_20	UniRef90	UniRef90_UPI0011598740	structural protein	NA
UHGV-0157820_20	eggNOG-mapper	226185.EF_0351	NA	NA
UHGV-0157820_20	Structural annotation	PF20747	NA	NA
UHGV-0157820_21	PHROG	phrog_538	minor tail protein	tail
UHGV-0157820_21	UniRef90	UniRef90_UPI001D0B76DC	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0157820_21	eggNOG-mapper	1321782.HMPREF1986_02278	NA	NA
UHGV-0157820_21	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0157820_21	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0157820_22	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0157820_22	UniRef90	UniRef90_UPI001D0AA3C9	phage tail family protein	NA
UHGV-0157820_22	eggNOG-mapper	428127.EUBDOL_01213	phage tail	NA
UHGV-0157820_22	COG	COG4722	Phage-related protein YomH	NA
UHGV-0157820_22	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0157820_23	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0157820_23	UniRef90	UniRef90_UPI001D0A3DB9	tape measure protein	NA
UHGV-0157820_23	eggNOG-mapper	999413.HMPREF1094_00207	nuclear chromosome segregation	NA
UHGV-0157820_23	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0157820_23	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0157820_23	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0157820_24	PHROG	phrog_706	NA	unknown function
UHGV-0157820_24	UniRef90	UniRef90_UPI001D0AAED0	bacteriophage Gp15 family protein	NA
UHGV-0157820_24	eggNOG-mapper	999413.HMPREF1094_00208	Bacteriophage Gp15 protein	NA
UHGV-0157820_24	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0157820_24	Structural annotation	PF06854	NA	NA
UHGV-0157820_25	Structural annotation	PF10666	NA	NA
UHGV-0157820_26	PHROG	phrog_3099	NA	unknown function
UHGV-0157820_26	eggNOG-mapper	632245.CLP_1654	NA	NA
UHGV-0157820_26	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0157820_27	UniRef90	UniRef90_UPI001D09DA0D	ABC transporter permease	NA
UHGV-0157820_27	Structural annotation	PF16807	NA	NA
UHGV-0157820_28	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0157820_28	UniRef90	UniRef90_UPI001D09B824	minor capsid protein	NA
UHGV-0157820_28	eggNOG-mapper	642492.Clole_0824	Minor capsid protein	NA
UHGV-0157820_28	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0157820_28	Structural annotation	PF11114	NA	NA
UHGV-0157820_29	UniRef90	UniRef90_UPI001E2BB5D0	minor capsid protein	NA
UHGV-0157820_29	Structural annotation	PF20536	NA	NA
UHGV-0157820_31	PHROG	phrog_212	major head protein	head and packaging
UHGV-0157820_31	UniRef90	UniRef90_UPI00189A455D	phage capsid protein	NA
UHGV-0157820_31	eggNOG-mapper	552396.HMPREF0863_00277	NA	NA
UHGV-0157820_31	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0157820_32	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0157820_32	UniRef90	UniRef90_UPI001D0A686C	phage scaffolding protein	NA
UHGV-0157820_32	eggNOG-mapper	1232449.BAHV02000010_gene2713	NA	NA
UHGV-0157820_32	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0157820_32	Structural annotation	PF06810	NA	NA
UHGV-0157820_34	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0157820_34	UniRef90	UniRef90_UPI001D0B3D9B	phage minor capsid protein	NA
UHGV-0157820_34	eggNOG-mapper	552396.HMPREF0863_00280	Phage minor capsid protein 2	NA
UHGV-0157820_34	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0157820_34	COG	COG2369	NA	NA
UHGV-0157820_34	Structural annotation	PF06152	NA	NA
UHGV-0157820_35	PHROG	phrog_533	portal protein	head and packaging
UHGV-0157820_35	UniRef90	UniRef90_UPI001430A874	phage portal protein	NA
UHGV-0157820_35	eggNOG-mapper	552396.HMPREF0863_00281	phage minor capsid protein	NA
UHGV-0157820_35	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0157820_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0157820_36	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0157820_36	UniRef90	UniRef90_UPI001D0AA0D4	terminase family protein	NA
UHGV-0157820_36	eggNOG-mapper	552396.HMPREF0863_00282	DNA packaging	NA
UHGV-0157820_36	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0157820_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-0157820_36	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0157820_37	PHROG	phrog_2412	NA	unknown function
UHGV-0157820_37	UniRef90	UniRef90_UPI000427CABE	KGG domain-containing protein	NA
UHGV-0157820_37	eggNOG-mapper	1232449.BAHV02000018_gene1532	NA	NA
UHGV-0157820_38	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0157820_38	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0157820_38	UniRef90	UniRef90_UPI001D0A8584	DNA modification methylase	NA
UHGV-0157820_38	eggNOG-mapper	521003.COLINT_02335	DNA methylase	NA
UHGV-0157820_38	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0157820_38	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0157820_38	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0157820_38	COG	COG0863	DNA modification methylase	NA
UHGV-0157820_38	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0157820_39	Structural annotation	TIGR01637	NA	NA
UHGV-0157820_40	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0157820_40	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0157820_40	UniRef90	UniRef90_UPI001E5F6A13	DEAD/DEAH box helicase	NA
UHGV-0157820_40	eggNOG-mapper	552396.HMPREF0863_00284	SNF2 family N-terminal domain	NA
UHGV-0157820_40	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0157820_40	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0157820_40	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0157820_40	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0157820_40	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0157820_41	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0157820_41	UniRef90	UniRef90_UPI00189BA373	VRR-NUC domain-containing protein	NA
UHGV-0157820_41	eggNOG-mapper	1122146.AUHP01000010_gene1025	VRR_NUC	NA
UHGV-0157820_41	Structural annotation	PF01870, MF_00130, NF040854, COG1591	NA	NA
UHGV-0157820_43	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0157820_43	UniRef90	UniRef90_A0A373NRP8	MazG domain-containing protein	NA
UHGV-0157820_44	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0157820_44	UniRef90	UniRef90_UPI001D0A1C03	virulence-associated E family protein	NA
UHGV-0157820_44	eggNOG-mapper	552396.HMPREF0863_00286	NA	NA
UHGV-0157820_44	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0157820_44	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0157820_44	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0157820_46	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0157820_46	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0157820_46	UniRef90	UniRef90_UPI001D0A031A	DNA polymerase	NA
UHGV-0157820_46	eggNOG-mapper	552396.HMPREF0863_00289	DNA polymerase	NA
UHGV-0157820_46	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0157820_46	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0157820_46	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0157820_47	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0157820_47	UniRef90	UniRef90_UPI0018993946	NA	NA
UHGV-0157820_47	eggNOG-mapper	552396.HMPREF0863_00290	NA	NA
UHGV-0157820_47	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0157820_47	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0157820_48	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0157820_48	UniRef90	UniRef90_UPI001D0AE809	NA	NA
UHGV-0157820_48	eggNOG-mapper	1235796.C815_00944	NA	NA
UHGV-0157820_48	Pfam	PF10926	NA	DUF2800
UHGV-0157820_48	COG	COG2887	RecB family exonuclease	NA
UHGV-0157820_48	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0157820_50	Structural annotation	NF040990	NA	NA
UHGV-0157820_53	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0157820_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0157820_53	UniRef90	UniRef90_UPI00189831EE	helix-turn-helix domain-containing protein	NA
UHGV-0157820_53	eggNOG-mapper	525254.HMPREF0072_0267	DNA-binding helix-turn-helix protein	NA
UHGV-0157820_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0157820_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0157820_53	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0157820_55	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0157820_55	UniRef90	UniRef90_UPI001D09EDED	helix-turn-helix domain-containing protein	NA
UHGV-0157820_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0157820_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0157820_55	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0157820_56	KOfam	K14059	int; integrase	NA
UHGV-0157820_56	PHROG	phrog_1	integrase	integration and excision
UHGV-0157820_56	UniRef90	UniRef90_UPI00189BAE2B	site-specific integrase	NA
UHGV-0157820_56	eggNOG-mapper	1232449.BAHV02000018_gene1556	Site-specific recombinase, phage integrase family	NA
UHGV-0157820_56	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0157820_56	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0157820_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0157820_56	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0157820_56	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA