UHGV-0157893

Genome information

Genome length 44,450 bps

CDS count 80

Completeness 82.69% (medium-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-0157893
vOTU ID	vOTU-027827
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_461714
BioSample	SAMN05024039
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.69% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	43
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.39
Jumbo phage	No

Genome content
Genome length	44,450 bps
GC content	46.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	80
CDS density	89.76%
Average CDS length	504.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0157893_1	PHROG	phrog_1361	NA	unknown function
UHGV-0157893_2	PHROG	phrog_1419	tail protein	tail
UHGV-0157893_2	UniRef90	UniRef90_UPI000530BA80	prophage tail fiber N-terminal domain-containing protein	NA
UHGV-0157893_2	eggNOG-mapper	199310.c1468	membrane protein of prophage CP-933X Escherichia coli O157 H7 EDL933	NA
UHGV-0157893_2	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0157893_2	Structural annotation	PF13385	NA	NA
UHGV-0157893_4	KOfam	K06240	LAMA3_5; laminin, alpha 3/5	NA
UHGV-0157893_4	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0157893_4	UniRef90	UniRef90_UPI000DDF8A8B	phage tail protein	NA
UHGV-0157893_4	eggNOG-mapper	1168549.I6R9B3_9CAUD	Putative phage tail protein	NA
UHGV-0157893_4	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0157893_4	Pfam	PF09327	NA	DUF1983
UHGV-0157893_4	Structural annotation	PF13550, PF09327, PF16303, PF14879, PF03944, MF_04116, NF040662, NF038126, TIGR04183, COG4733	NA	NA
UHGV-0157893_5	PHROG	phrog_32	tail assembly protein	tail
UHGV-0157893_5	UniRef90	UniRef90_A0A4T6JV72	Tail assembly protein	NA
UHGV-0157893_5	eggNOG-mapper	1147140.H6WRW3_9CAUD	virus tail assembly	NA
UHGV-0157893_5	Structural annotation	PF06805, NF008347, COG4723	NA	NA
UHGV-0157893_6	KOfam	K21140	mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6]	NA
UHGV-0157893_6	PHROG	phrog_30	minor tail protein	tail
UHGV-0157893_6	UniRef90	UniRef90_V0ANQ7	NlpC/P60 family protein	NA
UHGV-0157893_6	eggNOG-mapper	1115512.EH105704_01_02090	JAB/MPN domain	NA
UHGV-0157893_6	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0157893_6	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0157893_6	Structural annotation	PF00877, TIGR02219, NF041370, COG0791, COG1310	NA	NA
UHGV-0157893_7	PHROG	phrog_18	minor tail protein	tail
UHGV-0157893_7	UniRef90	UniRef90_V0A922	Phage minor tail protein L	NA
UHGV-0157893_7	eggNOG-mapper	101570.Q5G8W3_9CAUD	Phage minor tail protein L	NA
UHGV-0157893_7	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0157893_7	NCBIFam	TIGR01600.1	phage minor tail protein L	NA
UHGV-0157893_7	Structural annotation	PF05100, TIGR01600, COG4672	NA	NA
UHGV-0157893_8	PHROG	phrog_29559	NA	unknown function
UHGV-0157893_8	UniRef90	UniRef90_UPI0010AB6912	transporter	NA
UHGV-0157893_9	PHROG	phrog_38567	NA	unknown function
UHGV-0157893_10	PHROG	phrog_5689	NA	unknown function
UHGV-0157893_10	UniRef90	UniRef90_V0ACM4	ANT domain-containing protein	NA
UHGV-0157893_10	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0157893_11	PHROG	phrog_3249	NA	unknown function
UHGV-0157893_11	eggNOG-mapper	355246.Q333C7_9CAUD	NA	NA
UHGV-0157893_12	PHROG	phrog_14	minor tail protein	tail
UHGV-0157893_12	UniRef90	UniRef90_V0A918	Phage minor tail protein	NA
UHGV-0157893_12	eggNOG-mapper	101570.Q5G8W6_9CAUD	Phage minor tail protein	NA
UHGV-0157893_12	Pfam	PF05939	Phage minor tail protein	Phage_min_tail
UHGV-0157893_12	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0157893_13	PHROG	phrog_29810	NA	unknown function
UHGV-0157893_14	PHROG	phrog_1525	NA	unknown function
UHGV-0157893_15	PHROG	phrog_1538	tail length tape measure protein	tail
UHGV-0157893_15	UniRef90	UniRef90_A0A8E0J335	TMP_3 domain-containing protein	NA
UHGV-0157893_15	eggNOG-mapper	1168549.I6S1R4_9CAUD	peptidoglycan catabolic process	NA
UHGV-0157893_15	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0157893_15	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0157893_15	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0157893_16	KOfam	K11909	vasI; type VI secretion system protein VasI	NA
UHGV-0157893_16	PHROG	phrog_1848	NA	unknown function
UHGV-0157893_16	UniRef90	UniRef90_V0ANP8	Type VI secretion-associated protein, VC_A0118 family	NA
UHGV-0157893_16	eggNOG-mapper	1185766.DL1_03915	Type VI secretion system VasI, EvfG, VC_A0118	NA
UHGV-0157893_16	Pfam	PF11319	Type VI secretion system VasI, EvfG, VC_A0118	VasI
UHGV-0157893_17	PHROG	phrog_18614	NA	unknown function
UHGV-0157893_18	PHROG	phrog_791	NA	unknown function
UHGV-0157893_18	UniRef90	UniRef90_UPI0010CAF862	NA	NA
UHGV-0157893_18	eggNOG-mapper	1147140.H6WRU2_9CAUD	NA	NA
UHGV-0157893_18	Pfam	PF19759	NA	DUF6246
UHGV-0157893_18	Structural annotation	PF19759	NA	NA
UHGV-0157893_19	PHROG	phrog_853	major tail protein	tail
UHGV-0157893_19	UniRef90	UniRef90_UPI00177888C2	phage tail protein	NA
UHGV-0157893_19	eggNOG-mapper	101570.Q5G8X3_9CAUD	Phage major tail protein 2	NA
UHGV-0157893_19	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0157893_19	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0157893_20	PHROG	phrog_782	NA	unknown function
UHGV-0157893_20	UniRef90	UniRef90_Q5G8X4	Gp15	NA
UHGV-0157893_20	eggNOG-mapper	101570.Q5G8X4_9CAUD	NA	NA
UHGV-0157893_20	Structural annotation	PF12691	NA	NA
UHGV-0157893_21	UniRef90	UniRef90_UPI000BE57C21	HK97 gp10 family phage protein	NA
UHGV-0157893_21	eggNOG-mapper	1147140.H6WRT9_9CAUD	NA	NA
UHGV-0157893_21	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0157893_22	PHROG	phrog_797	NA	unknown function
UHGV-0157893_22	UniRef90	UniRef90_Q5G8X6	Gp13	NA
UHGV-0157893_22	eggNOG-mapper	101570.Q5G8X6_9CAUD	NA	NA
UHGV-0157893_22	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0157893_23	PHROG	phrog_1261	NA	unknown function
UHGV-0157893_23	UniRef90	UniRef90_A0A1Q5VGI5	50S ribosomal protein L13	NA
UHGV-0157893_23	eggNOG-mapper	158822.LH89_20520	NA	NA
UHGV-0157893_24	PHROG	phrog_786	NA	unknown function
UHGV-0157893_24	UniRef90	UniRef90_A0A376F9V3	Gp11	NA
UHGV-0157893_24	eggNOG-mapper	549.BW31_01427	NA	NA
UHGV-0157893_25	PHROG	phrog_771	virion structural protein	head and packaging
UHGV-0157893_25	UniRef90	UniRef90_UPI00038FA619	NA	NA
UHGV-0157893_25	eggNOG-mapper	101570.Q5G8Y0_9CAUD	NA	NA
UHGV-0157893_25	Pfam	PF19774	NA	DUF6260
UHGV-0157893_25	Structural annotation	PF19774, MF_04119, NF041155, COG4834	NA	NA
UHGV-0157893_26	PHROG	phrog_766	head decoration	head and packaging
UHGV-0157893_26	UniRef90	UniRef90_A0A346FE82	Virion structural protein	NA
UHGV-0157893_26	eggNOG-mapper	95619.PM1_0217775	NA	NA
UHGV-0157893_26	Structural annotation	PF02989, COG5471	NA	NA
UHGV-0157893_27	PHROG	phrog_760	NA	unknown function
UHGV-0157893_27	UniRef90	UniRef90_A0A5Q2F4G3	Prohead protease	NA
UHGV-0157893_27	eggNOG-mapper	1073754.G0ZND7_9VIRU	NA	NA
UHGV-0157893_27	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-0157893_28	PHROG	phrog_758	head morphogenesis	head and packaging
UHGV-0157893_28	UniRef90	UniRef90_A0A8E0J363	Phage_Mu_F domain-containing protein	NA
UHGV-0157893_28	eggNOG-mapper	1147140.H6WRT1_9CAUD	Phage Mu protein F like protein	NA
UHGV-0157893_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0157893_28	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0157893_28	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0157893_29	KOfam	K09961	NA	NA
UHGV-0157893_29	PHROG	phrog_146	portal protein	head and packaging
UHGV-0157893_29	UniRef90	UniRef90_D8A267	Putative phage-associated protein, HI1409 family	NA
UHGV-0157893_29	eggNOG-mapper	1147140.H6WRT0_9CAUD	NA	NA
UHGV-0157893_29	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-0157893_29	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-0157893_30	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0157893_30	UniRef90	UniRef90_A0A8E0J1U6	Terminase_6C domain-containing protein	NA
UHGV-0157893_30	eggNOG-mapper	1073754.G0ZND4_9VIRU	oxidoreductase activity	NA
UHGV-0157893_30	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0157893_30	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0157893_31	PHROG	phrog_1482	terminase small subunit	head and packaging
UHGV-0157893_31	UniRef90	UniRef90_A0A2X5S6Y8	DNA-binding protein	NA
UHGV-0157893_31	eggNOG-mapper	561229.Dd1591_4010	NA	NA
UHGV-0157893_31	Pfam	PF20901	Bacteriophage Sf6, terminase small subunit-like	Sf6_terminase
UHGV-0157893_31	Structural annotation	PF20901	NA	NA
UHGV-0157893_32	PHROG	phrog_1365	NA	unknown function
UHGV-0157893_32	eggNOG-mapper	90371.CY43_01845	NA	NA
UHGV-0157893_33	KOfam	K14744	rzpD; prophage endopeptidase [EC:3.4.-.-]	NA
UHGV-0157893_33	PHROG	phrog_13	Rz-like spanin	lysis
UHGV-0157893_33	UniRef90	UniRef90_V0AEC8	Bacteriophage lysis protein	NA
UHGV-0157893_33	eggNOG-mapper	399742.Ent638_2608	Bacteriophage Rz lysis protein	NA
UHGV-0157893_33	Pfam	PF03245	Bacteriophage Rz lysis protein	Phage_lysis
UHGV-0157893_33	Structural annotation	PF03245, MF_04137	NA	NA
UHGV-0157893_34	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0157893_34	PHROG	phrog_7	endolysin	lysis
UHGV-0157893_34	UniRef90	UniRef90_A0A346FE74	Lysozyme	NA
UHGV-0157893_34	eggNOG-mapper	1168548.I6R0P2_9CAUD	Phage lysozyme	NA
UHGV-0157893_34	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0157893_34	HAMAP	MF_04110	Endolysin	NA
UHGV-0157893_34	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0157893_35	PHROG	phrog_20	holin	lysis
UHGV-0157893_35	UniRef90	UniRef90_UPI001F2ED45C	phage holin family protein	NA
UHGV-0157893_35	eggNOG-mapper	243265.plu3415	Bacteriophage holin family HP1	NA
UHGV-0157893_35	Pfam	PF16080	Bacteriophage holin family HP1	Phage_holin_2_3
UHGV-0157893_36	PHROG	phrog_23715	NA	unknown function
UHGV-0157893_37	PHROG	phrog_15318	NA	unknown function
UHGV-0157893_38	PHROG	phrog_15318	NA	unknown function
UHGV-0157893_39	PHROG	phrog_10061	NA	unknown function
UHGV-0157893_40	PHROG	phrog_25234	NA	unknown function
UHGV-0157893_41	PHROG	phrog_23107	NA	unknown function
UHGV-0157893_43	PHROG	phrog_22232	Abi alpha-like abortive infection mechanism	moron, auxiliary metabolic gene and host takeover
UHGV-0157893_45	PHROG	phrog_38609	NA	unknown function
UHGV-0157893_47	PHROG	phrog_5009	NA	unknown function
UHGV-0157893_48	PHROG	phrog_30442	NA	unknown function
UHGV-0157893_49	PHROG	phrog_38280	NA	unknown function
UHGV-0157893_50	PHROG	phrog_16975	NA	unknown function
UHGV-0157893_51	PHROG	phrog_8758	NA	unknown function
UHGV-0157893_52	PHROG	phrog_625	NA	unknown function
UHGV-0157893_52	UniRef90	UniRef90_A0A193MN22	RNA-binding protein	NA
UHGV-0157893_52	eggNOG-mapper	1168548.I6S5Y4_9CAUD	NA	NA
UHGV-0157893_52	Structural annotation	PF12961	NA	NA
UHGV-0157893_53	PHROG	phrog_29262	NA	unknown function
UHGV-0157893_54	PHROG	phrog_35000	NA	unknown function
UHGV-0157893_55	PHROG	phrog_127	anti-termination protein Q-like	transcription regulation
UHGV-0157893_55	UniRef90	UniRef90_V0A7Z1	Antitermination protein	NA
UHGV-0157893_55	eggNOG-mapper	716541.ECL_03574	Antitermination protein	NA
UHGV-0157893_55	Pfam	PF03589	Antitermination protein	Antiterm
UHGV-0157893_55	COG	COG1107	Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain	NA
UHGV-0157893_55	HAMAP	MF_04158	Antitermination protein Q [Q]	NA
UHGV-0157893_55	Structural annotation	PF03589, PF00684, MF_04158, TIGR02642	NA	NA
UHGV-0157893_56	PHROG	phrog_18514	NA	unknown function
UHGV-0157893_57	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0157893_57	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0157893_57	UniRef90	UniRef90_V0AB33	Crossover junction endodeoxyribonuclease rusA	NA
UHGV-0157893_57	eggNOG-mapper	1127357.I1TEH3_9CAUD	Endodeoxyribonuclease RusA	NA
UHGV-0157893_57	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0157893_57	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0157893_58	PHROG	phrog_171	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0157893_58	UniRef90	UniRef90_A0A346FE62	Protein ninG	NA
UHGV-0157893_58	eggNOG-mapper	1073754.G0ZNC4_9VIRU	Bacteriophage Lambda NinG protein	NA
UHGV-0157893_58	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0157893_58	Structural annotation	PF05766	NA	NA
UHGV-0157893_59	PHROG	phrog_30170	NA	unknown function
UHGV-0157893_60	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0157893_60	UniRef90	UniRef90_A0A4T6JV26	DNA cytosine methyltransferase	NA
UHGV-0157893_60	eggNOG-mapper	245685.A5PJ32_9CAUD	methyltransferase activity	NA
UHGV-0157893_60	Structural annotation	PF01728, MF_01547, NF008390, COG0293	NA	NA
UHGV-0157893_61	PHROG	phrog_4899	NA	unknown function
UHGV-0157893_61	UniRef90	UniRef90_A0A520P730	VUT family protein	NA
UHGV-0157893_61	eggNOG-mapper	1121116.KB894777_gene1878	queuosine salvage	NA
UHGV-0157893_61	COG	COG1738	NA	NA
UHGV-0157893_61	Structural annotation	PF02592, MF_02088, NF008406, COG1738	NA	NA
UHGV-0157893_62	PHROG	phrog_474	phosphofructokinase	other
UHGV-0157893_62	UniRef90	UniRef90_V0ACT9	NA	NA
UHGV-0157893_62	eggNOG-mapper	624134.T2DRE9_9CAUD	NA	NA
UHGV-0157893_62	Pfam	PF19905	NA	DUF6378
UHGV-0157893_62	Structural annotation	PF19905	NA	NA
UHGV-0157893_63	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0157893_63	UniRef90	UniRef90_A0A4T3YHC2	Phage N-6-adenine-methyltransferase	NA
UHGV-0157893_63	eggNOG-mapper	642227.HA49_08485	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0157893_63	PADLOC	oMTase_00010	orphan methyltransferase	RM
UHGV-0157893_63	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0157893_63	NCBIFam	TIGR01712.1	phage N-6-adenine-methyltransferase	NA
UHGV-0157893_63	Structural annotation	PF05869, MF_01872, TIGR01712, COG4123	NA	NA
UHGV-0157893_64	PHROG	phrog_14059	NA	unknown function
UHGV-0157893_64	UniRef90	UniRef90_A0A4T3YH70	Cell division protein FtsK	NA
UHGV-0157893_65	PHROG	phrog_36823	NA	unknown function
UHGV-0157893_66	PHROG	phrog_37004	NA	unknown function
UHGV-0157893_67	PHROG	phrog_28996	NA	unknown function
UHGV-0157893_68	PHROG	phrog_1515	NA	unknown function
UHGV-0157893_69	PHROG	phrog_34371	NA	unknown function
UHGV-0157893_70	PHROG	phrog_34199	NA	unknown function
UHGV-0157893_71	PHROG	phrog_28396	NA	unknown function
UHGV-0157893_71	UniRef90	UniRef90_V0A7X8	Toxin-antitoxin system, toxin component domain protein	NA
UHGV-0157893_73	PHROG	phrog_28542	NA	unknown function
UHGV-0157893_73	UniRef90	UniRef90_UPI00132F83E7	NA	NA
UHGV-0157893_74	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0157893_74	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0157893_74	UniRef90	UniRef90_UPI0010AB89E0	single-stranded DNA-binding protein	NA
UHGV-0157893_74	eggNOG-mapper	1115512.EH105704_01_02780	single-stranded DNA-binding protein	NA
UHGV-0157893_74	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0157893_74	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0157893_74	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0157893_74	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0157893_74	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0157893_75	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0157893_75	UniRef90	UniRef90_A0A4T6JUX0	Recombinase	NA
UHGV-0157893_75	eggNOG-mapper	1168549.I6RSN3_9CAUD	ERF superfamily	NA
UHGV-0157893_75	Pfam	PF04404	ERF superfamily	ERF
UHGV-0157893_75	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0157893_76	PHROG	phrog_34942	NA	unknown function
UHGV-0157893_78	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0157893_78	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0157893_78	UniRef90	UniRef90_A0A8E0J140	HTH cro/C1-type domain-containing protein	NA
UHGV-0157893_78	eggNOG-mapper	173443.Q8HAG7_BPST6	Peptidase S24-like	NA
UHGV-0157893_78	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0157893_78	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0157893_78	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0157893_79	PHROG	phrog_4617	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0157893_79	UniRef90	UniRef90_UPI001F2815AA	MarR family transcriptional regulator	NA
UHGV-0157893_79	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0157893_80	PHROG	phrog_20981	NA	unknown function