UHGV-0157913

Genome information

Genome length 30,498 bps

CDS count 44

Completeness 86.68% (medium-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0157913
vOTU ID	vOTU-022157
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_464337
BioSample	SAMN06112064
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.68% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.02
Jumbo phage	No

Genome content
Genome length	30,498 bps
GC content	40.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	90.91%
Average CDS length	632.73 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0157913_1	PHROG	phrog_1914	NA	unknown function
UHGV-0157913_1	UniRef90	UniRef90_UPI000E543E50	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0157913_1	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0157913_1	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0157913_1	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0157913_1	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0157913_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0157913_2	UniRef90	UniRef90_UPI0015F3DE1D	helix-turn-helix domain-containing protein	NA
UHGV-0157913_2	eggNOG-mapper	663278.Ethha_2423	sequence-specific DNA binding	NA
UHGV-0157913_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0157913_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0157913_2	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0157913_3	UniRef90	UniRef90_UPI000E51362F	helix-turn-helix domain-containing protein	NA
UHGV-0157913_3	eggNOG-mapper	411461.DORFOR_00030	Helix-turn-helix XRE-family like proteins	NA
UHGV-0157913_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0157913_3	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0157913_6	PHROG	phrog_19458	primase	DNA, RNA and nucleotide metabolism
UHGV-0157913_6	eggNOG-mapper	411459.RUMOBE_01108	NA	NA
UHGV-0157913_6	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-0157913_7	PHROG	phrog_8684	NA	unknown function
UHGV-0157913_7	UniRef90	UniRef90_UPI000E48855B	YopX family protein	NA
UHGV-0157913_7	eggNOG-mapper	1235799.C818_02660	YopX protein	NA
UHGV-0157913_7	Pfam	PF09643	YopX protein	YopX
UHGV-0157913_7	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0157913_7	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0157913_8	PHROG	phrog_6058	NA	unknown function
UHGV-0157913_8	Structural annotation	NF033787	NA	NA
UHGV-0157913_11	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0157913_11	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0157913_11	UniRef90	UniRef90_A0A3D3D7T1	ParB domain-containing protein	NA
UHGV-0157913_11	eggNOG-mapper	394503.Ccel_3306	Belongs to the ParB family	NA
UHGV-0157913_11	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0157913_11	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0157913_11	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0157913_11	Structural annotation	PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0157913_13	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0157913_13	UniRef90	UniRef90_UPI001C01CFF8	SANT/Myb domain-containing protein	NA
UHGV-0157913_13	eggNOG-mapper	394503.Ccel_3305	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0157913_13	Pfam	PF00249	Myb-like DNA-binding domain	Myb_DNA-binding
UHGV-0157913_13	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0157913_13	Structural annotation	PF11112, NF040595	NA	NA
UHGV-0157913_14	PHROG	phrog_824	NA	unknown function
UHGV-0157913_14	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-0157913_14	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0157913_14	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0157913_14	Structural annotation	PF08774	NA	NA
UHGV-0157913_18	UniRef90	UniRef90_UPI000E4DC4DA	helix-turn-helix domain-containing protein	NA
UHGV-0157913_18	Structural annotation	PF15597	NA	NA
UHGV-0157913_19	PHROG	phrog_2999	NA	unknown function
UHGV-0157913_21	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0157913_21	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0157913_21	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0157913_22	PHROG	phrog_31049	NA	unknown function
UHGV-0157913_22	eggNOG-mapper	394503.Ccel_3053	NA	NA
UHGV-0157913_22	Structural annotation	TIGR01636	NA	NA
UHGV-0157913_23	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0157913_23	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-0157913_23	eggNOG-mapper	1405.DJ92_863	HNH endonuclease	NA
UHGV-0157913_23	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0157913_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0157913_24	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0157913_24	UniRef90	UniRef90_A0A1M5U1D5	Phage terminase, small subunit	NA
UHGV-0157913_24	eggNOG-mapper	1211817.CCAT010000053_gene2128	NA	NA
UHGV-0157913_24	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0157913_24	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0157913_25	UniRef90	UniRef90_A0A358Q126	Terminase (Fragment)	NA
UHGV-0157913_25	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0157913_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0157913_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0157913_26	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-0157913_26	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0157913_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0157913_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0157913_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0157913_26	Structural annotation	PF20441, MF_04147, TIGR01547, COG4626	NA	NA
UHGV-0157913_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-0157913_27	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-0157913_27	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0157913_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0157913_27	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0157913_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0157913_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0157913_28	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0157913_28	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0157913_28	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0157913_28	eggNOG-mapper	86416.Clopa_0340	Belongs to the peptidase S14 family	NA
UHGV-0157913_28	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0157913_28	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0157913_28	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0157913_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-0157913_29	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-0157913_29	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0157913_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0157913_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0157913_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0157913_29	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0157913_30	PHROG	phrog_749	NA	unknown function
UHGV-0157913_30	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-0157913_30	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0157913_31	PHROG	phrog_19734	NA	unknown function
UHGV-0157913_31	UniRef90	UniRef90_UPI00057FE645	phage head closure protein	NA
UHGV-0157913_31	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0157913_31	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0157913_32	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0157913_33	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-0157913_33	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0157913_33	Structural annotation	TIGR01725	NA	NA
UHGV-0157913_34	PHROG	phrog_88	major tail protein	tail
UHGV-0157913_34	UniRef90	UniRef90_A0A1G5CNS8	Phage major tail protein, phi13 family	NA
UHGV-0157913_34	eggNOG-mapper	1321782.HMPREF1986_01362	phage major tail protein, phi13 family	NA
UHGV-0157913_34	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0157913_34	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0157913_35	Structural annotation	PF11836	NA	NA
UHGV-0157913_36	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0157913_36	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0157913_36	UniRef90	UniRef90_A0A412ULX0	PhageMin_Tail domain-containing protein	NA
UHGV-0157913_36	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-0157913_36	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0157913_36	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0157913_36	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0157913_37	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0157913_37	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0157913_37	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0157913_37	COG	COG4722	Phage-related protein YomH	NA
UHGV-0157913_37	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0157913_38	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0157913_38	UniRef90	UniRef90_A0A1G5CPD2	Phage minor structural protein, N-terminal region	NA
UHGV-0157913_38	eggNOG-mapper	1462527.CCDM010000003_gene3730	gp58-like protein	NA
UHGV-0157913_38	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0157913_38	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0157913_38	COG	COG1511	NA	NA
UHGV-0157913_38	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0157913_39	PHROG	phrog_5302	tail protein	tail
UHGV-0157913_39	UniRef90	UniRef90_A0A373XLZ6	NA	NA
UHGV-0157913_39	eggNOG-mapper	742740.HMPREF9474_02337	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0157913_39	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0157913_39	Structural annotation	PF10651, NF040788	NA	NA
UHGV-0157913_41	UniRef90	UniRef90_A0A373XMY3	Branched-chain amino acid ABC transporter permease	NA
UHGV-0157913_41	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-0157913_42	PHROG	phrog_881	holin	lysis
UHGV-0157913_42	UniRef90	UniRef90_R7EEV6	Conserved domain protein	NA
UHGV-0157913_42	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0157913_42	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0157913_42	Structural annotation	PF16938	NA	NA
UHGV-0157913_43	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0157913_43	PHROG	phrog_20388	endolysin	lysis
UHGV-0157913_43	UniRef90	UniRef90_A0A374N1L8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0157913_43	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0157913_43	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0157913_43	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0157913_43	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0157913_43	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA
UHGV-0157913_44	eggNOG-mapper	411483.FAEPRAA2165_03404	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0157913_44	COG	COG0863	DNA modification methylase	NA