UHGV-0157924

Genome information

Genome length 27,714 bps

CDS count 57

Completeness 65.37% (medium-quality)

geNomad score 0.9823

Prediction confidence Confident

Genome information
Genome ID	UHGV-0157924
vOTU ID	vOTU-027829
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_470754
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.37% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9823
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.16
Jumbo phage	No

Genome content
Genome length	27,714 bps
GC content	53.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	96.36%
Average CDS length	474.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0157924_2	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0157924_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0157924_2	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0157924_6	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0157924_6	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0157924_6	UniRef90	UniRef90_A0A1C6E5W1	Methyltransferase	NA
UHGV-0157924_6	eggNOG-mapper	35241.Q9XJE8_BPTU2	helicase activity	NA
UHGV-0157924_6	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0157924_6	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0157924_6	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0157924_7	PHROG	phrog_22529	NA	unknown function
UHGV-0157924_7	UniRef90	UniRef90_A0A352RPR8	3D domain-containing protein	NA
UHGV-0157924_7	eggNOG-mapper	1304866.K413DRAFT_1950	3D domain protein	NA
UHGV-0157924_7	Pfam	PF06725	3D domain	3D
UHGV-0157924_7	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0157924_7	Structural annotation	PF06725, MF_02071, NF040670, COG3584	NA	NA
UHGV-0157924_10	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0157924_10	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0157924_10	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0157924_10	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0157924_11	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0157924_11	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0157924_11	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0157924_11	Structural annotation	PF05772	NA	NA
UHGV-0157924_12	PHROG	phrog_7566	NA	unknown function
UHGV-0157924_13	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0157924_13	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0157924_13	UniRef90	UniRef90_A0A810QFR8	Single-stranded DNA-binding protein	NA
UHGV-0157924_13	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-0157924_13	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0157924_13	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0157924_13	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0157924_13	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0157924_13	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0157924_14	PHROG	phrog_16304	NA	unknown function
UHGV-0157924_14	UniRef90	UniRef90_A0A2K4ZME0	NA	NA
UHGV-0157924_14	eggNOG-mapper	445972.ANACOL_01828	NA	NA
UHGV-0157924_14	Pfam	PF19808	NA	DUF6291
UHGV-0157924_14	Structural annotation	PF19808	NA	NA
UHGV-0157924_15	PHROG	phrog_9804	NA	unknown function
UHGV-0157924_15	UniRef90	UniRef90_A0A8D9PDS1	Replisome organizer	NA
UHGV-0157924_15	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0157924_15	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0157924_15	Structural annotation	PF11417	NA	NA
UHGV-0157924_18	Structural annotation	PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0157924_19	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0157924_19	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0157924_19	UniRef90	UniRef90_A0A365QUR0	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0157924_19	eggNOG-mapper	632245.CLP_1623	Endodeoxyribonuclease RusA	NA
UHGV-0157924_19	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0157924_19	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0157924_21	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0157924_21	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0157924_21	UniRef90	UniRef90_UPI0015D721B0	helix-turn-helix domain-containing protein	NA
UHGV-0157924_21	eggNOG-mapper	1414719.CBYN010000013_gene1538	Helix-turn-helix XRE-family like proteins	NA
UHGV-0157924_21	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0157924_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0157924_21	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0157924_21	Structural annotation	PF01381, PF13744, NF041951, COG3655, COG2944	NA	NA
UHGV-0157924_23	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0157924_23	UniRef90	UniRef90_A0A374BFJ7	DNA cytosine methyltransferase	NA
UHGV-0157924_23	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0157924_23	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0157924_23	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0157924_24	PHROG	phrog_27610	NA	unknown function
UHGV-0157924_25	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0157924_25	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0157924_26	UniRef90	UniRef90_UPI0012AD39DD	leucine-rich repeat protein	NA
UHGV-0157924_29	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0157924_29	UniRef90	UniRef90_UPI000D8A0ABE	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0157924_29	eggNOG-mapper	1283338.Q4Z920_BPTWO	hydrolase activity	NA
UHGV-0157924_29	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0157924_30	PHROG	phrog_3136	NA	unknown function
UHGV-0157924_30	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0157924_30	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0157924_30	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0157924_30	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0157924_37	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0157924_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0157924_37	UniRef90	UniRef90_A0A8D9PDC4	Repressor protein	NA
UHGV-0157924_37	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0157924_37	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0157924_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0157924_37	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0157924_38	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0157924_38	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0157924_38	UniRef90	UniRef90_UPI001D05F697	terminase small subunit	NA
UHGV-0157924_38	eggNOG-mapper	697281.Mahau_0566	Terminase Small Subunit	NA
UHGV-0157924_38	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0157924_38	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0157924_38	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0157924_39	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0157924_39	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0157924_39	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0157924_39	eggNOG-mapper	1123511.KB905868_gene187	Phage terminase large subunit	NA
UHGV-0157924_39	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0157924_39	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0157924_39	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0157924_39	COG	COG1783	Phage terminase large subunit	NA
UHGV-0157924_39	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0157924_40	PHROG	phrog_533	portal protein	head and packaging
UHGV-0157924_40	UniRef90	UniRef90_UPI0006C81717	phage portal protein	NA
UHGV-0157924_40	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0157924_40	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0157924_40	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0157924_42	PHROG	phrog_8680	NA	unknown function
UHGV-0157924_42	UniRef90	UniRef90_A0A3R6D7I3	NA	NA
UHGV-0157924_42	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0157924_42	Pfam	PF14386	NA	DUF4417
UHGV-0157924_42	Structural annotation	PF14386	NA	NA
UHGV-0157924_43	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0157924_43	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-0157924_43	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0157924_43	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0157924_43	COG	COG2369	NA	NA
UHGV-0157924_43	Structural annotation	PF06152	NA	NA
UHGV-0157924_44	UniRef90	UniRef90_A0A2Z4Q9Y8	Minor structural protein	NA
UHGV-0157924_44	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-0157924_44	Structural annotation	PF06810	NA	NA
UHGV-0157924_45	PHROG	phrog_10	major head protein	head and packaging
UHGV-0157924_45	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-0157924_45	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0157924_45	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0157924_45	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0157924_45	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0157924_45	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0157924_46	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0157924_46	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0157924_47	PHROG	phrog_3366	NA	unknown function
UHGV-0157924_47	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0157924_47	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0157924_48	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0157924_48	UniRef90	UniRef90_A0A2U1BEM0	Minor capsid protein	NA
UHGV-0157924_48	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0157924_48	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0157924_48	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0157924_49	PHROG	phrog_3266	tail completion	connector
UHGV-0157924_49	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0157924_49	Structural annotation	PF12691	NA	NA
UHGV-0157924_50	PHROG	phrog_3099	NA	unknown function
UHGV-0157924_50	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-0157924_50	Structural annotation	TIGR02126	NA	NA
UHGV-0157924_51	PHROG	phrog_11299	NA	unknown function
UHGV-0157924_51	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0157924_51	Structural annotation	PF10666	NA	NA
UHGV-0157924_52	PHROG	phrog_706	NA	unknown function
UHGV-0157924_52	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0157924_52	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0157924_52	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0157924_52	Structural annotation	PF06854	NA	NA
UHGV-0157924_53	PHROG	phrog_806	NA	unknown function
UHGV-0157924_53	UniRef90	UniRef90_UPI00137B5163	NA	NA
UHGV-0157924_53	eggNOG-mapper	397290.C810_05150	NA	NA
UHGV-0157924_53	Pfam	PF11611	NA	DUF4352
UHGV-0157924_53	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0157924_54	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0157924_54	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0157924_54	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0157924_54	COG	COG1511	NA	NA
UHGV-0157924_54	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0157924_55	PHROG	phrog_1194	NA	unknown function
UHGV-0157924_55	eggNOG-mapper	1232443.BAIA02000078_gene17	NA	NA
UHGV-0157924_55	Pfam	PF20458	NA	DUF6711
UHGV-0157924_55	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0157924_56	eggNOG-mapper	1235797.C816_04180	NA	NA