UHGV-0158023

Genome information

Genome length 26,792 bps

CDS count 41

Completeness 60.91% (medium-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0158023
vOTU ID	vOTU-018230
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_479416
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.91% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.95
Jumbo phage	No

Genome content
Genome length	26,792 bps
GC content	51.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	88.66%
Average CDS length	580.90 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0158023_3	KOfam	K19370	DNAJC22; DnaJ homolog subfamily C member 22	NA
UHGV-0158023_3	PHROG	phrog_10292	NA	unknown function
UHGV-0158023_3	UniRef90	UniRef90_A0A1Q6KIC5	TM2 domain-containing protein	NA
UHGV-0158023_3	eggNOG-mapper	665956.HMPREF1032_00562	TM2 domain	NA
UHGV-0158023_3	Pfam	PF05154	TM2 domain	TM2
UHGV-0158023_3	COG	COG2314	NA	NA
UHGV-0158023_3	Structural annotation	PF05154, PF12773, MF_00788, NF003161	NA	NA
UHGV-0158023_4	KOfam	K14059	int; integrase	NA
UHGV-0158023_4	PHROG	phrog_1	integrase	integration and excision
UHGV-0158023_4	UniRef90	UniRef90_A0A1C5W824	Integrase	NA
UHGV-0158023_4	eggNOG-mapper	445972.ANACOL_01797	Belongs to the 'phage' integrase family	NA
UHGV-0158023_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0158023_4	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0158023_4	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0158023_5	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0158023_6	Structural annotation	PF12510	NA	NA
UHGV-0158023_7	PHROG	phrog_20016	NA	unknown function
UHGV-0158023_7	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0158023_7	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0158023_7	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0158023_8	PHROG	phrog_16490	NA	unknown function
UHGV-0158023_8	eggNOG-mapper	1226322.HMPREF1545_00076	NA	NA
UHGV-0158023_9	PHROG	phrog_22984	NA	unknown function
UHGV-0158023_10	PHROG	phrog_21718	NA	unknown function
UHGV-0158023_10	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0158023_11	PHROG	phrog_3754	NA	unknown function
UHGV-0158023_11	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0158023_12	UniRef90	UniRef90_U2R3E6	KORA domain-containing protein	NA
UHGV-0158023_12	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0158023_13	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0158023_13	PHROG	phrog_670	endolysin	lysis
UHGV-0158023_13	UniRef90	UniRef90_U2SBT6	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0158023_13	eggNOG-mapper	1226322.HMPREF1545_00070	Ami_2	NA
UHGV-0158023_13	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0158023_13	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0158023_13	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0158023_14	PHROG	phrog_1129	holin	lysis
UHGV-0158023_14	UniRef90	UniRef90_A0A1C7FPV3	Enolase	NA
UHGV-0158023_14	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0158023_14	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0158023_14	Structural annotation	PF06946	NA	NA
UHGV-0158023_16	PHROG	phrog_937	hemolysin	other
UHGV-0158023_16	eggNOG-mapper	445972.ANACOL_03381	NA	NA
UHGV-0158023_17	PHROG	phrog_2310	NA	unknown function
UHGV-0158023_18	eggNOG-mapper	1226322.HMPREF1545_00128	NA	NA
UHGV-0158023_19	UniRef90	UniRef90_A0A4D7AHL6	Collagen-like protein	NA
UHGV-0158023_19	eggNOG-mapper	1226322.HMPREF1545_00064	NA	NA
UHGV-0158023_19	Structural annotation	PF18459	NA	NA
UHGV-0158023_20	PHROG	phrog_32744	NA	unknown function
UHGV-0158023_20	eggNOG-mapper	1232449.BAHV02000010_gene2725	NA	NA
UHGV-0158023_20	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0158023_21	PHROG	phrog_1194	NA	unknown function
UHGV-0158023_21	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0158023_21	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0158023_22	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0158023_22	UniRef90	UniRef90_R6TDK7	Phage-related protein-like protein	NA
UHGV-0158023_22	eggNOG-mapper	1226322.HMPREF1545_00059	tape measure	NA
UHGV-0158023_22	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0158023_22	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0158023_23	PHROG	phrog_706	NA	unknown function
UHGV-0158023_23	UniRef90	UniRef90_UPI0018A0FACA	Gp15 family bacteriophage protein	NA
UHGV-0158023_23	eggNOG-mapper	1226322.HMPREF1545_00058	Bacteriophage Gp15 protein	NA
UHGV-0158023_23	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0158023_23	Structural annotation	PF06854	NA	NA
UHGV-0158023_24	PHROG	phrog_11299	NA	unknown function
UHGV-0158023_24	eggNOG-mapper	1226322.HMPREF1545_00057	NA	NA
UHGV-0158023_24	Structural annotation	PF10666	NA	NA
UHGV-0158023_25	PHROG	phrog_3099	NA	unknown function
UHGV-0158023_25	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-0158023_25	Structural annotation	TIGR02126	NA	NA
UHGV-0158023_26	PHROG	phrog_3266	tail completion	connector
UHGV-0158023_26	eggNOG-mapper	1226322.HMPREF1545_00055	NA	NA
UHGV-0158023_26	Structural annotation	PF12691	NA	NA
UHGV-0158023_27	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0158023_27	UniRef90	UniRef90_UPI00189F11C5	minor capsid protein	NA
UHGV-0158023_27	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0158023_27	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0158023_27	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0158023_28	PHROG	phrog_3366	NA	unknown function
UHGV-0158023_28	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0158023_28	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0158023_29	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0158023_29	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0158023_30	eggNOG-mapper	1226322.HMPREF1545_00051	NA	NA
UHGV-0158023_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-0158023_31	UniRef90	UniRef90_U2SBS0	Phage capsid family protein	NA
UHGV-0158023_31	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0158023_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0158023_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0158023_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0158023_31	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0158023_32	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0158023_33	Structural annotation	PF18152	NA	NA
UHGV-0158023_34	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0158023_34	UniRef90	UniRef90_U2SBR7	Ntox50 domain-containing protein	NA
UHGV-0158023_34	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0158023_34	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0158023_34	COG	COG2369	NA	NA
UHGV-0158023_34	Structural annotation	PF06152	NA	NA
UHGV-0158023_35	PHROG	phrog_533	portal protein	head and packaging
UHGV-0158023_35	UniRef90	UniRef90_U2R2D2	Putative phage minor capsid protein	NA
UHGV-0158023_35	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0158023_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0158023_35	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0158023_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0158023_36	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0158023_36	UniRef90	UniRef90_A0A1C6J947	Bacteriophage terminase large (ATPase) subunit and inactivated derivatives	NA
UHGV-0158023_36	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0158023_36	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0158023_36	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0158023_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-0158023_36	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0158023_37	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0158023_37	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0158023_37	UniRef90	UniRef90_A0A1Y4RZ16	Methyltransferase	NA
UHGV-0158023_37	eggNOG-mapper	1378168.N510_02840	DNA methylase	NA
UHGV-0158023_37	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0158023_37	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0158023_37	COG	COG0863	DNA modification methylase	NA
UHGV-0158023_37	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0158023_38	UniRef90	UniRef90_UPI0009523D83	helix-turn-helix domain containing protein	NA
UHGV-0158023_38	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0158023_38	Pfam	PF04218	CENP-B N-terminal DNA-binding domain	CENP-B_N
UHGV-0158023_38	Structural annotation	PF13542	NA	NA
UHGV-0158023_40	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0158023_40	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0158023_40	UniRef90	UniRef90_A0A096DGF2	HTH cro/C1-type domain-containing protein	NA
UHGV-0158023_40	eggNOG-mapper	742738.HMPREF9460_00887	Helix-turn-helix XRE-family like proteins	NA
UHGV-0158023_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0158023_40	Structural annotation	PF01381, NF041951, COG1476	NA	NA