UHGV-0158096

Genome information

Genome length 24,136 bps

CDS count 36

Completeness 63.23% (medium-quality)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-0158096
vOTU ID	vOTU-027834
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_473737
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.23% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.58
Jumbo phage	No

Genome content
Genome length	24,136 bps
GC content	44.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	96.97%
Average CDS length	654.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0158096_1	UniRef90	UniRef90_UPI001D03B79A	NA	NA
UHGV-0158096_1	eggNOG-mapper	411461.DORFOR_00014	NA	NA
UHGV-0158096_1	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0158096_3	PHROG	phrog_15198	NA	unknown function
UHGV-0158096_3	UniRef90	UniRef90_UPI001106CE2F	NA	NA
UHGV-0158096_3	Pfam	PF04448	NA	DUF551
UHGV-0158096_3	Structural annotation	NF041588	NA	NA
UHGV-0158096_4	PHROG	phrog_22292	NA	unknown function
UHGV-0158096_5	PHROG	phrog_20593	NA	unknown function
UHGV-0158096_5	UniRef90	UniRef90_UPI001C00E342	NA	NA
UHGV-0158096_5	AcrCatalog	cluster_27421	NA	NA
UHGV-0158096_7	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0158096_7	UniRef90	UniRef90_UPI001D03C0B1	Lar family restriction alleviation protein	NA
UHGV-0158096_7	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0158096_9	PHROG	phrog_7024	NA	unknown function
UHGV-0158096_9	eggNOG-mapper	1235802.C823_01504	NA	NA
UHGV-0158096_10	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0158096_10	UniRef90	UniRef90_A0A415D8G2	Sigma70_r4 domain-containing protein	NA
UHGV-0158096_10	eggNOG-mapper	1232453.BAIF02000011_gene3350	NA	NA
UHGV-0158096_10	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0158096_10	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0158096_11	PHROG	phrog_8680	NA	unknown function
UHGV-0158096_11	UniRef90	UniRef90_A0A415D8N8	NA	NA
UHGV-0158096_11	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0158096_11	Pfam	PF14386	NA	DUF4417
UHGV-0158096_11	Structural annotation	PF14386	NA	NA
UHGV-0158096_13	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0158096_13	UniRef90	UniRef90_UPI001F487344	DNA-packaging protein	NA
UHGV-0158096_13	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0158096_13	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0158096_13	Structural annotation	PF16677	NA	NA
UHGV-0158096_14	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0158096_14	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0158096_14	UniRef90	UniRef90_A0A415D8B5	PBSX family phage terminase large subunit	NA
UHGV-0158096_14	eggNOG-mapper	742765.HMPREF9457_02119	Terminase-like family	NA
UHGV-0158096_14	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0158096_14	COG	COG1783	Phage terminase large subunit	NA
UHGV-0158096_14	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0158096_15	PHROG	phrog_533	portal protein	head and packaging
UHGV-0158096_15	UniRef90	UniRef90_A0A415D8P0	Phage capsid protein	NA
UHGV-0158096_15	eggNOG-mapper	742765.HMPREF9457_02120	NA	NA
UHGV-0158096_15	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0158096_16	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0158096_16	UniRef90	UniRef90_A0A173TSV6	Phage minor capsid protein 2	NA
UHGV-0158096_16	eggNOG-mapper	471875.RUMLAC_01547	NA	NA
UHGV-0158096_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0158096_16	COG	COG2369	NA	NA
UHGV-0158096_16	Structural annotation	PF06152, PF15887, TIGR01641, COG4307	NA	NA
UHGV-0158096_18	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0158096_18	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0158096_18	UniRef90	UniRef90_D4MVN1	Type I restriction-modification system methyltransferase subunit	NA
UHGV-0158096_18	eggNOG-mapper	592010.GCWU000182_001448	HsdM N-terminal domain	NA
UHGV-0158096_18	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0158096_18	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0158096_18	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0158096_18	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0158096_19	eggNOG-mapper	592010.GCWU000182_001449	Type I restriction modification DNA specificity domain	NA
UHGV-0158096_19	Structural annotation	PF01420, COG0732	NA	NA
UHGV-0158096_20	KOfam	K07584	NA	NA
UHGV-0158096_20	PHROG	phrog_4478	peptidase	other
UHGV-0158096_20	UniRef90	UniRef90_A0A415D8F7	Ribosomal-processing cysteine protease Prp	NA
UHGV-0158096_20	eggNOG-mapper	411461.DORFOR_00746	Pfam:Peptidase_C108	NA
UHGV-0158096_20	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0158096_20	COG	COG2868	NA	NA
UHGV-0158096_20	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0158096_21	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0158096_21	UniRef90	UniRef90_UPI00129D2861	phage scaffolding protein	NA
UHGV-0158096_21	eggNOG-mapper	411470.RUMGNA_02218	COG NOG36366 non supervised orthologous group	NA
UHGV-0158096_21	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0158096_21	Structural annotation	PF06810	NA	NA
UHGV-0158096_22	PHROG	phrog_422	major head protein	head and packaging
UHGV-0158096_22	eggNOG-mapper	742765.HMPREF9457_02127	NA	NA
UHGV-0158096_22	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0158096_23	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0158096_23	eggNOG-mapper	658655.HMPREF0988_02559	NA	NA
UHGV-0158096_23	Structural annotation	PF05135	NA	NA
UHGV-0158096_24	PHROG	phrog_3366	NA	unknown function
UHGV-0158096_24	eggNOG-mapper	742723.HMPREF9477_00903	NA	NA
UHGV-0158096_24	Pfam	PF20536	NA	DUF6751
UHGV-0158096_24	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0158096_25	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0158096_25	UniRef90	UniRef90_A0A415D8C9	Capsid protein	NA
UHGV-0158096_25	eggNOG-mapper	742723.HMPREF9477_00902	Minor capsid protein	NA
UHGV-0158096_25	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0158096_25	Structural annotation	PF11114	NA	NA
UHGV-0158096_26	PHROG	phrog_3266	tail completion	connector
UHGV-0158096_26	UniRef90	UniRef90_A0A2N2DTS1	Chloramphenicol resistance protein	NA
UHGV-0158096_26	eggNOG-mapper	742723.HMPREF9477_00901	NA	NA
UHGV-0158096_26	Structural annotation	PF12691	NA	NA
UHGV-0158096_27	PHROG	phrog_3099	NA	unknown function
UHGV-0158096_27	UniRef90	UniRef90_A0A3P6KYP0	Phage capsid family protein	NA
UHGV-0158096_27	eggNOG-mapper	742723.HMPREF9477_00900	NA	NA
UHGV-0158096_27	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0158096_28	PHROG	phrog_4450	NA	unknown function
UHGV-0158096_28	UniRef90	UniRef90_UPI001A8FEF87	AP endonuclease	NA
UHGV-0158096_28	eggNOG-mapper	1280692.AUJL01000004_gene838	NA	NA
UHGV-0158096_28	Pfam	PF20378	NA	DUF6673
UHGV-0158096_28	Structural annotation	PF20378	NA	NA
UHGV-0158096_29	PHROG	phrog_706	NA	unknown function
UHGV-0158096_29	UniRef90	UniRef90_UPI001CD5259B	bacteriophage Gp15 family protein	NA
UHGV-0158096_29	eggNOG-mapper	742723.HMPREF9477_00898	Bacteriophage Gp15 protein	NA
UHGV-0158096_29	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0158096_29	Structural annotation	PF06854	NA	NA
UHGV-0158096_30	PHROG	phrog_5218	NA	unknown function
UHGV-0158096_30	UniRef90	UniRef90_A0A415D8X3	Phage tail tape measure protein	NA
UHGV-0158096_30	eggNOG-mapper	411460.RUMTOR_02094	Phage-related minor tail protein	NA
UHGV-0158096_30	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0158096_30	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0158096_30	COG	COG4487	NA	NA
UHGV-0158096_30	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0158096_31	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0158096_31	eggNOG-mapper	411462.DORLON_00776	NA	NA
UHGV-0158096_32	PHROG	phrog_538	minor tail protein	tail
UHGV-0158096_32	UniRef90	UniRef90_UPI001F3E20C1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0158096_32	eggNOG-mapper	742765.HMPREF9457_03374	NA	NA
UHGV-0158096_32	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0158096_32	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0158096_33	PHROG	phrog_13141	NA	unknown function
UHGV-0158096_33	UniRef90	UniRef90_A0A6L8RVX5	H_lectin domain-containing protein	NA
UHGV-0158096_33	eggNOG-mapper	411460.RUMTOR_02097	NA	NA
UHGV-0158096_33	Structural annotation	PF20747, PF08931	NA	NA
UHGV-0158096_34	PHROG	phrog_12931	NA	unknown function
UHGV-0158096_34	eggNOG-mapper	411461.DORFOR_00728	NA	NA
UHGV-0158096_35	PHROG	phrog_1382	NA	unknown function
UHGV-0158096_35	eggNOG-mapper	411461.DORFOR_00727	NA	NA
UHGV-0158096_36	PHROG	phrog_937	hemolysin	other
UHGV-0158096_36	eggNOG-mapper	742740.HMPREF9474_03172	NA	NA