UHGV-0158143

Genome information

Genome length 34,263 bps

CDS count 53

Completeness 100.00% (complete)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0158143
vOTU ID	vOTU-046258
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_446691
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	71.94
Jumbo phage	No

Genome content
Genome length	34,263 bps
GC content	41.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	94.26%
Average CDS length	612.68 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0158143_10	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0158143_10	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0158143_10	UniRef90	UniRef90_UPI00066CF237	single-stranded DNA-binding protein	NA
UHGV-0158143_10	eggNOG-mapper	638301.HMPREF0444_1554	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0158143_10	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0158143_10	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0158143_10	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0158143_10	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0158143_10	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0158143_11	PHROG	phrog_2113	NA	unknown function
UHGV-0158143_11	eggNOG-mapper	1403946.Q615_SPAC00135G0035	NA	NA
UHGV-0158143_12	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0158143_12	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0158143_12	UniRef90	UniRef90_UPI000353544B	NA	NA
UHGV-0158143_12	eggNOG-mapper	883110.HMPREF9260_00673	NA	NA
UHGV-0158143_12	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0158143_12	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0158143_12	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0158143_12	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0158143_12	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-0158143_14	PHROG	phrog_398	NA	unknown function
UHGV-0158143_14	UniRef90	UniRef90_UPI00066BCEE1	putative HNHc nuclease	NA
UHGV-0158143_14	eggNOG-mapper	1234679.BN424_2645	Putative HNHc nuclease	NA
UHGV-0158143_14	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0158143_14	Structural annotation	PF16784	NA	NA
UHGV-0158143_15	PHROG	phrog_674	NA	unknown function
UHGV-0158143_16	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0158143_16	UniRef90	UniRef90_UPI001A9ADC75	ERF family protein	NA
UHGV-0158143_16	eggNOG-mapper	764291.STRUR_0809	ERF superfamily	NA
UHGV-0158143_16	Pfam	PF04404	ERF superfamily	ERF
UHGV-0158143_19	PHROG	phrog_1529	NA	unknown function
UHGV-0158143_19	UniRef90	UniRef90_UPI00135A2A07	XRE family transcriptional regulator	NA
UHGV-0158143_19	eggNOG-mapper	638301.HMPREF0444_1489	NA	NA
UHGV-0158143_19	Structural annotation	PF01381, TIGR02607, COG3655	NA	NA
UHGV-0158143_25	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0158143_25	PHROG	phrog_7854	endolysin	lysis
UHGV-0158143_25	UniRef90	UniRef90_C8NHU6	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0158143_25	eggNOG-mapper	638301.HMPREF0444_1491	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0158143_25	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0158143_25	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-0158143_25	Pfam	PF19085	Choline-binding repeat	Choline_bind_2
UHGV-0158143_25	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0158143_25	Structural annotation	PF01510, PF19127, MF_04111, TIGR04035, NF008758, COG5263, COG3023	NA	NA
UHGV-0158143_26	PHROG	phrog_32123	NA	unknown function
UHGV-0158143_26	UniRef90	UniRef90_UPI00094EEBC2	collagen-like protein	NA
UHGV-0158143_26	eggNOG-mapper	997830.HMPREF1124_0614	Collagen triple helix repeat (20 copies)	NA
UHGV-0158143_26	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0158143_26	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0158143_27	PHROG	phrog_10091	holin	lysis
UHGV-0158143_27	UniRef90	UniRef90_UPI0008A4D2A5	phage holin	NA
UHGV-0158143_27	eggNOG-mapper	638301.HMPREF0444_1492	Holin, phage phi LC3 family	NA
UHGV-0158143_27	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0158143_27	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0158143_27	COG	COG5546	NA	NA
UHGV-0158143_27	Structural annotation	COG5546	NA	NA
UHGV-0158143_28	PHROG	phrog_4257	NA	unknown function
UHGV-0158143_28	eggNOG-mapper	562981.HMPREF0428_00966	NA	NA
UHGV-0158143_30	PHROG	phrog_372	tail protein	tail
UHGV-0158143_30	UniRef90	UniRef90_UPI00066B7F9C	NA	NA
UHGV-0158143_30	eggNOG-mapper	638301.HMPREF0444_1495	NA	NA
UHGV-0158143_30	Pfam	PF05895	NA	DUF859
UHGV-0158143_30	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0158143_31	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0158143_31	UniRef90	UniRef90_UPI00066D70C5	phage tail protein	NA
UHGV-0158143_31	eggNOG-mapper	638301.HMPREF0444_1496	Prophage endopeptidase tail	NA
UHGV-0158143_31	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0158143_31	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0158143_31	COG	COG4926	Phage-related protein	NA
UHGV-0158143_31	Structural annotation	PF14594, PF21602, TIGR01665, TIGR04488, COG4926	NA	NA
UHGV-0158143_32	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0158143_32	UniRef90	UniRef90_UPI00066B10C0	phage tail family protein	NA
UHGV-0158143_32	eggNOG-mapper	411470.RUMGNA_02229	NA	NA
UHGV-0158143_32	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0158143_32	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0158143_32	COG	COG4722	Phage-related protein YomH	NA
UHGV-0158143_32	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0158143_33	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0158143_33	UniRef90	UniRef90_UPI00066C9574	tape measure protein	NA
UHGV-0158143_33	eggNOG-mapper	173707.Q938K3_9CAUD	NA	NA
UHGV-0158143_33	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0158143_33	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0158143_33	Structural annotation	PF20155, PF06456, COG3941	NA	NA
UHGV-0158143_34	PHROG	phrog_706	NA	unknown function
UHGV-0158143_34	UniRef90	UniRef90_UPI00066D8EBA	Gp15 family bacteriophage protein	NA
UHGV-0158143_34	eggNOG-mapper	537874.B3GW12_9CAUD	Bacteriophage Gp15 protein	NA
UHGV-0158143_34	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0158143_34	Structural annotation	PF06854	NA	NA
UHGV-0158143_35	PHROG	phrog_1061	NA	unknown function
UHGV-0158143_35	UniRef90	UniRef90_A0A1M5XPW2	Phage tail assembly chaperone protein Gp14 ()A118	NA
UHGV-0158143_35	eggNOG-mapper	1214217.ALNF01000014_gene1368	NA	NA
UHGV-0158143_35	Structural annotation	PF10666	NA	NA
UHGV-0158143_36	PHROG	phrog_820	major tail protein	tail
UHGV-0158143_36	UniRef90	UniRef90_A0A0X8KMB0	Phage tail protein	NA
UHGV-0158143_36	eggNOG-mapper	562981.HMPREF0428_00975	NA	NA
UHGV-0158143_36	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-0158143_37	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0158143_37	UniRef90	UniRef90_A0A4D6B9R1	Minor capsid protein	NA
UHGV-0158143_37	eggNOG-mapper	294382.Q5YA65_9CAUD	Minor capsid protein from bacteriophage	NA
UHGV-0158143_37	Structural annotation	PF12691	NA	NA
UHGV-0158143_38	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0158143_38	UniRef90	UniRef90_A0A061P4J1	Phage minor capsid protein	NA
UHGV-0158143_38	eggNOG-mapper	1460635.JCM19038_3470	Minor capsid protein	NA
UHGV-0158143_38	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0158143_38	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0158143_39	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0158143_39	UniRef90	UniRef90_UPI00066D337F	putative minor capsid protein	NA
UHGV-0158143_39	eggNOG-mapper	1140001.I571_02112	Minor capsid protein	NA
UHGV-0158143_39	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0158143_39	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0158143_40	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0158143_40	UniRef90	UniRef90_A0A376H5I9	Protein gp8	NA
UHGV-0158143_40	eggNOG-mapper	1214217.ALNF01000014_gene1373	NA	NA
UHGV-0158143_42	PHROG	phrog_422	major head protein	head and packaging
UHGV-0158143_42	UniRef90	UniRef90_A0A1F0ZPF7	N4-gp56 family major capsid protein	NA
UHGV-0158143_42	eggNOG-mapper	764291.STRUR_2102	NA	NA
UHGV-0158143_42	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0158143_43	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0158143_43	UniRef90	UniRef90_UPI00066A3D38	phage scaffolding protein	NA
UHGV-0158143_43	eggNOG-mapper	324831.LGAS_0609	Phage minor structural protein GP20	NA
UHGV-0158143_43	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0158143_43	Structural annotation	PF06810	NA	NA
UHGV-0158143_44	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0158143_44	UniRef90	UniRef90_UPI001F051349	phage minor capsid protein	NA
UHGV-0158143_44	eggNOG-mapper	1196028.ALEF01000043_gene467	Phage minor capsid protein 2	NA
UHGV-0158143_44	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0158143_44	COG	COG2369	NA	NA
UHGV-0158143_44	Structural annotation	PF06152	NA	NA
UHGV-0158143_45	PHROG	phrog_533	portal protein	head and packaging
UHGV-0158143_45	UniRef90	UniRef90_UPI00066CD916	phage portal protein	NA
UHGV-0158143_45	eggNOG-mapper	1460635.JCM19038_3463	portal protein	NA
UHGV-0158143_45	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0158143_45	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0158143_45	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0158143_46	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0158143_46	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0158143_46	UniRef90	UniRef90_UPI00066E03A8	PBSX family phage terminase large subunit	NA
UHGV-0158143_46	eggNOG-mapper	936154.STP_1602	Phage terminase, large subunit	NA
UHGV-0158143_46	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0158143_46	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0158143_46	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0158143_46	COG	COG1783	Phage terminase large subunit	NA
UHGV-0158143_46	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0158143_47	PHROG	phrog_2412	NA	unknown function
UHGV-0158143_47	UniRef90	UniRef90_A0A837L2H6	Stress-induced protein	NA
UHGV-0158143_47	eggNOG-mapper	120574.Q8SBI2_9CAUD	NA	NA
UHGV-0158143_48	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0158143_48	UniRef90	UniRef90_A0A0U3P173	Integrase regulator RinA	NA
UHGV-0158143_48	eggNOG-mapper	1120978.KB894087_gene427	Transcriptional regulator, RinA family	NA
UHGV-0158143_48	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-0158143_48	Structural annotation	PF05263, TIGR01636	NA	NA