UHGV-0158157

Genome information

Genome length 34,760 bps

CDS count 47

Completeness 69.76% (medium-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0158157
vOTU ID	vOTU-027837
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_497034
BioSample	SAMN06110051
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.76% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.19
Jumbo phage	No

Genome content
Genome length	34,760 bps
GC content	34.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	90.32%
Average CDS length	671.49 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0158157_2	PHROG	phrog_159	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0158157_2	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0158157_4	PHROG	phrog_1706	CRISPR/Cas system associated	DNA, RNA and nucleotide metabolism
UHGV-0158157_4	eggNOG-mapper	1499968.TCA2_4616	DNA catabolic process, exonucleolytic	NA
UHGV-0158157_4	COG	COG1468	CRISPR/Cas system-associated exonuclease Cas4, RecB family	NA
UHGV-0158157_4	Structural annotation	PF01930, MF_03030, TIGR00372, COG5377	NA	NA
UHGV-0158157_13	KOfam	K03553	recA; recombination protein RecA	NA
UHGV-0158157_13	PHROG	phrog_97	UvsX-like recombinase	other
UHGV-0158157_13	UniRef90	UniRef90_A0A843GSV7	RECA_3 domain-containing protein	NA
UHGV-0158157_13	eggNOG-mapper	1121267.JHZL01000006_gene901	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	NA
UHGV-0158157_13	Pfam	PF00154	recA bacterial DNA recombination protein	RecA
UHGV-0158157_13	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0158157_13	Structural annotation	PF00154, MF_00268, TIGR02012, COG0468	NA	NA
UHGV-0158157_15	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-0158157_15	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0158157_15	UniRef90	UniRef90_A0A843GPT9	DNA-directed DNA polymerase	NA
UHGV-0158157_15	eggNOG-mapper	1158345.JNLL01000001_gene729	TIGRFAM DNA polymerase III, alpha subunit	NA
UHGV-0158157_15	Pfam	PF02811	PHP domain	PHP
UHGV-0158157_15	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-0158157_15	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-0158157_15	Pfam	PF14579	Helix-hairpin-helix motif	HHH_6
UHGV-0158157_15	NCBIFam	TIGR00594.1	DNA polymerase III subunit alpha	NA
UHGV-0158157_15	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-0158157_15	Structural annotation	PF07733, PF02811, PF17657, PF14579, MF_01902, TIGR00594, COG0587	NA	NA
UHGV-0158157_16	PHROG	phrog_236	nucleotide kinase	other
UHGV-0158157_16	UniRef90	UniRef90_UPI001D04CE99	NA	NA
UHGV-0158157_16	eggNOG-mapper	1123263.AUKY01000015_gene1590	NA	NA
UHGV-0158157_16	Pfam	PF11753	NA	DUF3310
UHGV-0158157_16	Structural annotation	PF11753	NA	NA
UHGV-0158157_17	UniRef90	UniRef90_A0A7X8WD06	NA	NA
UHGV-0158157_18	Structural annotation	PF08804	NA	NA
UHGV-0158157_19	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0158157_19	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0158157_19	UniRef90	UniRef90_A0A843GN62	Toprim domain-containing protein	NA
UHGV-0158157_19	eggNOG-mapper	573061.Clocel_1457	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-0158157_19	PADLOC	drt-UG29	DRT	DRT
UHGV-0158157_19	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0158157_19	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0158157_19	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0158157_19	Structural annotation	PF01807, PF13155, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-0158157_22	PHROG	phrog_937	hemolysin	other
UHGV-0158157_22	eggNOG-mapper	742740.HMPREF9474_03172	NA	NA
UHGV-0158157_23	PHROG	phrog_1220	head protein	head and packaging
UHGV-0158157_23	UniRef90	UniRef90_A0A6B3YJZ4	Phage tail protein (Fragment)	NA
UHGV-0158157_23	eggNOG-mapper	536232.CLM_2920	NA	NA
UHGV-0158157_23	Structural annotation	PF08931, PF20747	NA	NA
UHGV-0158157_24	PHROG	phrog_538	minor tail protein	tail
UHGV-0158157_24	UniRef90	UniRef90_UPI00067EC57D	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0158157_24	eggNOG-mapper	536232.CLM_2044	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0158157_24	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0158157_24	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0158157_25	PHROG	phrog_36410	NA	unknown function
UHGV-0158157_25	UniRef90	UniRef90_A0A7X9C3E1	Phage tail family protein	NA
UHGV-0158157_25	eggNOG-mapper	536232.CLM_2045	Phage tail protein	NA
UHGV-0158157_25	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0158157_25	COG	COG4722	Phage-related protein YomH	NA
UHGV-0158157_25	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0158157_26	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0158157_26	UniRef90	UniRef90_A0A351TJS6	Phage tail tape measure protein	NA
UHGV-0158157_26	eggNOG-mapper	1410670.JHXF01000015_gene2302	Phage tail tape measure protein, TP901 family	NA
UHGV-0158157_26	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0158157_26	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0158157_26	COG	COG5283	Phage-related tail protein	NA
UHGV-0158157_26	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-0158157_27	PHROG	phrog_6280	NA	unknown function
UHGV-0158157_27	UniRef90	UniRef90_A0A8J6PH67	Esterase	NA
UHGV-0158157_27	eggNOG-mapper	445335.CBN_3078	NA	NA
UHGV-0158157_28	PHROG	phrog_6686	tail tube protein	tail
UHGV-0158157_28	UniRef90	UniRef90_A0A1C6KI12	S-l_SbsC_C domain-containing protein	NA
UHGV-0158157_28	eggNOG-mapper	1304880.JAGB01000002_gene2211	NA	NA
UHGV-0158157_28	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0158157_29	PHROG	phrog_7585	NA	unknown function
UHGV-0158157_29	eggNOG-mapper	1196322.A370_04060	NA	NA
UHGV-0158157_30	eggNOG-mapper	632292.Calhy_0769	Phage virion morphogenesis	NA
UHGV-0158157_30	COG	COG5005	NA	NA
UHGV-0158157_30	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0158157_31	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0158157_32	PHROG	phrog_4020	NA	unknown function
UHGV-0158157_32	eggNOG-mapper	1121342.AUCO01000012_gene1692	NA	NA
UHGV-0158157_33	Structural annotation	PF08593	NA	NA
UHGV-0158157_34	PHROG	phrog_29	major head protein	head and packaging
UHGV-0158157_34	UniRef90	UniRef90_UPI00082C04A5	major capsid protein	NA
UHGV-0158157_34	eggNOG-mapper	1158612.I580_01912	Phage major capsid protein E	NA
UHGV-0158157_34	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0158157_34	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0158157_35	eggNOG-mapper	1158607.UAU_01759	NA	NA
UHGV-0158157_35	Structural annotation	PF02924	NA	NA
UHGV-0158157_36	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0158157_36	eggNOG-mapper	997296.PB1_16214	NA	NA
UHGV-0158157_36	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0158157_37	PHROG	phrog_1315	NA	unknown function
UHGV-0158157_38	Structural annotation	PF06133	NA	NA
UHGV-0158157_40	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0158157_40	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0158157_40	UniRef90	UniRef90_A0A349YJR5	ADPrib_exo_Tox domain-containing protein	NA
UHGV-0158157_40	eggNOG-mapper	1567015.A0A0A7RUI1_9VIRU	Phage Mu protein F like protein	NA
UHGV-0158157_40	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0158157_40	Structural annotation	PF03496, NF040688	NA	NA
UHGV-0158157_41	PHROG	phrog_64	portal protein	head and packaging
UHGV-0158157_41	UniRef90	UniRef90_A0A843GSM3	Phage portal protein	NA
UHGV-0158157_41	eggNOG-mapper	1121342.AUCO01000012_gene1700	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0158157_41	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0158157_41	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0158157_42	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0158157_42	PHROG	phrog_435	endolysin	lysis
UHGV-0158157_42	UniRef90	UniRef90_B0G4K0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0158157_42	eggNOG-mapper	411461.DORFOR_01187	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0158157_42	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0158157_42	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0158157_42	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0158157_42	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, NF038080, COG0860, COG3409	NA	NA
UHGV-0158157_43	PHROG	phrog_443	holin	lysis
UHGV-0158157_43	UniRef90	UniRef90_UPI000C75746C	holin	NA
UHGV-0158157_43	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0158157_43	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0158157_43	Structural annotation	PF16945	NA	NA
UHGV-0158157_44	PHROG	phrog_17134	NA	unknown function
UHGV-0158157_46	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0158157_46	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0158157_46	UniRef90	UniRef90_A0A349YI29	PBSX family phage terminase large subunit	NA
UHGV-0158157_46	eggNOG-mapper	536232.CLM_2529	Phage terminase, large subunit, PBSX family	NA
UHGV-0158157_46	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0158157_46	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0158157_46	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0158157_46	COG	COG1783	Phage terminase large subunit	NA
UHGV-0158157_46	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0158157_47	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0158157_47	UniRef90	UniRef90_A0A843GSL4	Helix-turn-helix transcriptional regulator	NA
UHGV-0158157_47	eggNOG-mapper	742733.HMPREF9469_01828	transposase activity	NA
UHGV-0158157_47	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0158157_47	COG	COG2963	Transposase InsE and inactivated derivatives	NA