UHGV-0158203

Genome information

Genome length 42,933 bps

CDS count 69

Completeness 53.24% (medium-quality)

geNomad score 0.9782

Prediction confidence Confident

Genome information
Genome ID	UHGV-0158203
vOTU ID	vOTU-027843
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_473901
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.24% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9782
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	8.87
Jumbo phage	No

Genome content
Genome length	42,933 bps
GC content	37.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	84.63%
Average CDS length	529.30 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0158203_1	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0158203_1	UniRef90	UniRef90_A0A173UGN1	ORF6C domain	NA
UHGV-0158203_1	eggNOG-mapper	476272.RUMHYD_01986	P22_AR N-terminal domain	NA
UHGV-0158203_1	Pfam	PF10547	P22_AR N-terminal domain	P22_AR_N
UHGV-0158203_1	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0158203_1	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0158203_1	Structural annotation	PF10552, PF10547, COG3617	NA	NA
UHGV-0158203_2	Structural annotation	PF01017, TIGR02890	NA	NA
UHGV-0158203_3	KOfam	K09952	csn1, cas9; CRISPR-associated endonuclease Csn1 [EC:3.1.-.-]	NA
UHGV-0158203_3	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0158203_3	UniRef90	UniRef90_A0A373NQW5	HNH endonuclease	NA
UHGV-0158203_3	eggNOG-mapper	97139.C824_02826	HNH endonuclease	NA
UHGV-0158203_3	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0158203_3	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0158203_3	Structural annotation	PF14279	NA	NA
UHGV-0158203_5	PHROG	phrog_1194	NA	unknown function
UHGV-0158203_5	eggNOG-mapper	1117108.PAALTS15_13512	NA	NA
UHGV-0158203_5	Pfam	PF20458	NA	DUF6711
UHGV-0158203_5	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0158203_6	PHROG	phrog_6616	tail protein	tail
UHGV-0158203_6	UniRef90	UniRef90_R5QUN9	Peptidase S74 domain-containing protein	NA
UHGV-0158203_6	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0158203_6	COG	COG4926	Phage-related protein	NA
UHGV-0158203_6	Structural annotation	PF05113, PF18957, PF16407, NF033848, NF011782, COG4379	NA	NA
UHGV-0158203_7	UniRef90	UniRef90_UPI001C0EBDDC	pyocin knob domain-containing protein	NA
UHGV-0158203_8	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0158203_8	PHROG	phrog_3088	amidase	lysis
UHGV-0158203_8	UniRef90	UniRef90_A0A173WJQ4	N-acetylmuramoyl-L-alanine amidase CwlH	NA
UHGV-0158203_8	eggNOG-mapper	457412.RSAG_02159	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0158203_8	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0158203_8	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0158203_8	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0158203_8	Structural annotation	PF01510, PF08230, NF008758, COG5632	NA	NA
UHGV-0158203_9	KOfam	K07705	lytT, lytR; two-component system, LytTR family, response regulator LytT	NA
UHGV-0158203_9	PHROG	phrog_8810	NA	unknown function
UHGV-0158203_9	UniRef90	UniRef90_A0A373NRE0	Stage 0 sporulation protein A homolog	NA
UHGV-0158203_9	eggNOG-mapper	556261.HMPREF0240_03082	response regulator	NA
UHGV-0158203_9	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0158203_9	Pfam	PF04397	LytTr DNA-binding domain	LytTR
UHGV-0158203_9	COG	COG3279	DNA-binding response regulator, LytR/AlgR family	NA
UHGV-0158203_9	Structural annotation	PF04397, PF00072, MF_00981, NF010684, COG3279	NA	NA
UHGV-0158203_12	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0158203_12	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0158203_12	UniRef90	UniRef90_A0A373NS05	XRE family transcriptional regulator	NA
UHGV-0158203_12	eggNOG-mapper	683837.lse_1630	Helix-turn-helix XRE-family like proteins	NA
UHGV-0158203_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0158203_12	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0158203_12	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-0158203_13	UniRef90	UniRef90_A0A373NQX7	XRE family transcriptional regulator	NA
UHGV-0158203_13	eggNOG-mapper	1163671.JAGI01000002_gene3923	NA	NA
UHGV-0158203_13	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0158203_14	UniRef90	UniRef90_A0A373NQA7	XRE family transcriptional regulator	NA
UHGV-0158203_14	eggNOG-mapper	1226325.HMPREF1548_06746	NA	NA
UHGV-0158203_14	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0158203_15	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0158203_15	UniRef90	UniRef90_A0A373NRG3	ORF6N domain-containing protein	NA
UHGV-0158203_15	eggNOG-mapper	926561.KB900622_gene670	ORF6N domain	NA
UHGV-0158203_15	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0158203_15	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0158203_15	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0158203_17	UniRef90	UniRef90_A0A1Y4F3A4	50S ribosomal protein L29	NA
UHGV-0158203_19	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0158203_19	PHROG	phrog_4433	NA	unknown function
UHGV-0158203_19	UniRef90	UniRef90_C4Z5W8	Collagen, type I/II/III/V/XI, alpha	NA
UHGV-0158203_19	eggNOG-mapper	665950.HMPREF1025_01373	regulation of DNA-templated transcription, elongation	NA
UHGV-0158203_19	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0158203_19	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0158203_21	PHROG	phrog_26861	NA	unknown function
UHGV-0158203_21	UniRef90	UniRef90_UPI001F33AC1F	single-stranded DNA-binding protein	NA
UHGV-0158203_21	eggNOG-mapper	858215.Thexy_1661	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-0158203_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0158203_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0158203_21	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0158203_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0158203_22	PHROG	phrog_26861	NA	unknown function
UHGV-0158203_22	UniRef90	UniRef90_A0A373NQB7	Single-stranded DNA-binding protein	NA
UHGV-0158203_22	eggNOG-mapper	1235790.C805_03806	NA	NA
UHGV-0158203_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0158203_22	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0158203_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0158203_22	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0158203_23	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0158203_23	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0158203_23	UniRef90	UniRef90_A0A373NR21	AAA_23 domain-containing protein	NA
UHGV-0158203_23	eggNOG-mapper	476272.RUMHYD_03317	nuclear chromosome segregation	NA
UHGV-0158203_23	Pfam	PF13476	AAA domain	AAA_23
UHGV-0158203_23	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0158203_23	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0158203_24	PHROG	phrog_15946	NA	unknown function
UHGV-0158203_24	eggNOG-mapper	1041147.AUFB01000014_gene330	NA	NA
UHGV-0158203_25	Structural annotation	TIGR02582, COG1604	NA	NA
UHGV-0158203_27	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0158203_27	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0158203_27	UniRef90	UniRef90_A0A373NRM0	Recombinase RecT	NA
UHGV-0158203_27	eggNOG-mapper	1298920.KI911353_gene2727	RecT family	NA
UHGV-0158203_27	Pfam	PF03837	RecT family	RecT
UHGV-0158203_27	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0158203_27	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0158203_27	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0158203_28	PHROG	phrog_9958	NA	unknown function
UHGV-0158203_28	UniRef90	UniRef90_F7JKD2	NA	NA
UHGV-0158203_28	eggNOG-mapper	658655.HMPREF0988_00873	NA	NA
UHGV-0158203_28	Pfam	PF19789	NA	DUF6273
UHGV-0158203_28	Structural annotation	PF19789	NA	NA
UHGV-0158203_29	PHROG	phrog_9958	NA	unknown function
UHGV-0158203_29	UniRef90	UniRef90_A0A3E5ENL3	NA	NA
UHGV-0158203_29	eggNOG-mapper	658655.HMPREF0988_00873	NA	NA
UHGV-0158203_29	Pfam	PF19789	NA	DUF6273
UHGV-0158203_29	Structural annotation	PF19789	NA	NA
UHGV-0158203_30	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-0158203_30	UniRef90	UniRef90_A0A3E5ENL0	Four helix bundle protein	NA
UHGV-0158203_30	eggNOG-mapper	658655.HMPREF0988_00872	NA	NA
UHGV-0158203_30	Pfam	PF05635	23S rRNA-intervening sequence protein	23S_rRNA_IVP
UHGV-0158203_30	Structural annotation	PF05635, NF033474, COG3308	NA	NA
UHGV-0158203_31	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0158203_31	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0158203_31	UniRef90	UniRef90_R5LG58	RNA-directed DNA polymerase	NA
UHGV-0158203_31	eggNOG-mapper	658655.HMPREF0988_00871	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0158203_31	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0158203_31	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0158203_31	Structural annotation	TIGR04416, COG3344	NA	NA
UHGV-0158203_32	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0158203_32	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0158203_32	UniRef90	UniRef90_A0A3E5EPX6	Reverse transcriptase domain-containing protein	NA
UHGV-0158203_32	eggNOG-mapper	658655.HMPREF0988_00871	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0158203_32	PADLOC	drt-UG3	DRT	DRT
UHGV-0158203_32	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0158203_32	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0158203_33	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0158203_33	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0158203_33	UniRef90	UniRef90_A0A373NR15	MBL fold metallo-hydrolase	NA
UHGV-0158203_33	eggNOG-mapper	397290.C810_01486	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0158203_33	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0158203_33	dbAPIS	APIS001	NA	NA
UHGV-0158203_33	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0158203_33	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0158203_37	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0158203_37	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0158203_37	UniRef90	UniRef90_A0A373NQD5	Single-stranded DNA-binding protein	NA
UHGV-0158203_37	eggNOG-mapper	411474.COPEUT_01783	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0158203_37	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0158203_37	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0158203_37	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0158203_37	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0158203_37	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0158203_38	PHROG	phrog_2164	NA	unknown function
UHGV-0158203_38	eggNOG-mapper	1260356.D920_00267	NA	NA
UHGV-0158203_39	PHROG	phrog_19106	NA	unknown function
UHGV-0158203_39	UniRef90	UniRef90_A0A412EKN4	GIY-YIG nuclease family protein	NA
UHGV-0158203_39	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0158203_39	Structural annotation	TIGR01453	NA	NA
UHGV-0158203_40	UniRef90	UniRef90_UPI0009C032EA	helix-turn-helix domain-containing protein	NA
UHGV-0158203_40	eggNOG-mapper	476272.RUMHYD_03349	NA	NA
UHGV-0158203_43	Structural annotation	NF041197	NA	NA
UHGV-0158203_46	PHROG	phrog_419	NA	unknown function
UHGV-0158203_46	eggNOG-mapper	1134413.ANNK01000120_gene2032	NA	NA
UHGV-0158203_47	UniRef90	UniRef90_A0A317UCE7	NA	NA
UHGV-0158203_48	PHROG	phrog_20593	NA	unknown function
UHGV-0158203_51	PHROG	phrog_7711	NA	unknown function
UHGV-0158203_51	UniRef90	UniRef90_A0A0N7JDH6	NA	NA
UHGV-0158203_51	eggNOG-mapper	189425.PGRAT_24145	NA	NA
UHGV-0158203_52	PHROG	phrog_38832	NA	unknown function
UHGV-0158203_52	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0158203_52	Structural annotation	PF09038	NA	NA
UHGV-0158203_54	PHROG	phrog_1578	NA	unknown function
UHGV-0158203_54	eggNOG-mapper	637730.C8XUQ6_9CAUD	NA	NA
UHGV-0158203_55	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0158203_55	UniRef90	UniRef90_A0A373NRP8	MazG domain-containing protein	NA
UHGV-0158203_55	eggNOG-mapper	326426.Bbr_0313	NA	NA
UHGV-0158203_55	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0158203_55	Structural annotation	PF12643, NF001613, COG0140	NA	NA
UHGV-0158203_56	UniRef90	UniRef90_A0A373NR35	NA	NA
UHGV-0158203_56	eggNOG-mapper	411459.RUMOBE_02036	NA	NA
UHGV-0158203_56	Pfam	PF14199	NA	DUF4317
UHGV-0158203_56	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA
UHGV-0158203_57	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0158203_57	UniRef90	UniRef90_A0A373NR46	Phage_rep_org_N domain-containing protein	NA
UHGV-0158203_57	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0158203_57	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0158203_57	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0158203_57	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0158203_58	PHROG	phrog_9804	NA	unknown function
UHGV-0158203_58	UniRef90	UniRef90_A0A373NS51	Inhibitor_G39P domain-containing protein	NA
UHGV-0158203_58	eggNOG-mapper	903814.ELI_3550	Loader and inhibitor of phage G40P	NA
UHGV-0158203_58	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0158203_58	Structural annotation	PF11417	NA	NA
UHGV-0158203_60	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0158203_60	PHROG	phrog_95	integrase	integration and excision
UHGV-0158203_60	UniRef90	UniRef90_A0A373NR59	Recombinase family protein	NA
UHGV-0158203_60	eggNOG-mapper	457412.RSAG_00880	Resolvase, N terminal domain	NA
UHGV-0158203_60	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0158203_60	Pfam	PF07508	Recombinase	Recombinase
UHGV-0158203_60	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0158203_60	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0158203_60	Structural annotation	PF00239, PF07508, PF18822, NF041201, COG1961	NA	NA
UHGV-0158203_61	PHROG	phrog_8680	NA	unknown function
UHGV-0158203_61	UniRef90	UniRef90_A0A373NQS6	NA	NA
UHGV-0158203_61	eggNOG-mapper	476272.RUMHYD_01896	NA	NA
UHGV-0158203_61	Pfam	PF14386	NA	DUF4417
UHGV-0158203_61	Structural annotation	PF14386	NA	NA
UHGV-0158203_65	PHROG	phrog_6246	NA	unknown function
UHGV-0158203_65	Structural annotation	PF04937, NF041175	NA	NA
UHGV-0158203_66	PHROG	phrog_31631	NA	unknown function