UHGV-0158225

Genome information

Genome length 35,532 bps

CDS count 54

Completeness 82.58% (medium-quality)

geNomad score 0.9754

Prediction confidence Confident

Genome information
Genome ID	UHGV-0158225
vOTU ID	vOTU-015190
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_480222
BioSample	SAMN06115439
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.58% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9754
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.03
Jumbo phage	No

Genome content
Genome length	35,532 bps
GC content	57.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	92.69%
Average CDS length	616.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0158225_1	UniRef90	UniRef90_UPI00195A5197	translation initiation factor 2	NA
UHGV-0158225_1	eggNOG-mapper	428125.CLOLEP_02252	NA	NA
UHGV-0158225_2	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0158225_2	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0158225_2	UniRef90	UniRef90_A0A1Q6T5P2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0158225_2	eggNOG-mapper	428125.CLOLEP_00771	NA	NA
UHGV-0158225_2	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0158225_2	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0158225_2	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0158225_3	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0158225_3	UniRef90	UniRef90_UPI001C3AB1F3	Helix-turn-helix transcriptional regulator	NA
UHGV-0158225_3	eggNOG-mapper	445972.ANACOL_00561	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0158225_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0158225_3	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0158225_3	Structural annotation	PF13443, NF041951, COG3655	NA	NA
UHGV-0158225_4	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0158225_4	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0158225_4	UniRef90	UniRef90_UPI001C3B62EA	DNA adenine methylase	NA
UHGV-0158225_4	eggNOG-mapper	411471.SUBVAR_06973	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0158225_4	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-0158225_4	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0158225_4	COG	COG0338	DNA-adenine methylase	NA
UHGV-0158225_4	Structural annotation	PF02086, TIGR00571, COG0338	NA	NA
UHGV-0158225_5	PHROG	phrog_13256	NA	unknown function
UHGV-0158225_5	eggNOG-mapper	1226322.HMPREF1545_02800	NA	NA
UHGV-0158225_6	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0158225_6	UniRef90	UniRef90_A0A658K045	NA	NA
UHGV-0158225_6	eggNOG-mapper	999411.HMPREF1092_00897	NA	NA
UHGV-0158225_6	Pfam	PF14359	NA	DUF4406
UHGV-0158225_6	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0158225_7	KOfam	K07273	acm; lysozyme	NA
UHGV-0158225_7	PHROG	phrog_291	endolysin	lysis
UHGV-0158225_7	UniRef90	UniRef90_A0A367G061	Peptidase_M23 domain-containing protein (Fragment)	NA
UHGV-0158225_7	eggNOG-mapper	411471.SUBVAR_06927	Glycosyl hydrolases family 25	NA
UHGV-0158225_7	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0158225_7	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0158225_7	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0158225_7	Structural annotation	PF01551, PF01183, NF040883, COG0739, COG3757	NA	NA
UHGV-0158225_8	PHROG	phrog_24267	NA	unknown function
UHGV-0158225_8	UniRef90	UniRef90_G4Q8U0	Side tail fiber protein from lambdoid prophage Rac	NA
UHGV-0158225_8	eggNOG-mapper	508419.F8J176_9CAUD	peptidoglycan catabolic process	NA
UHGV-0158225_8	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0158225_8	Pfam	PF03406	Phage tail fibre repeat	Phage_fiber_2
UHGV-0158225_9	PHROG	phrog_19111	NA	unknown function
UHGV-0158225_9	eggNOG-mapper	756499.Desde_3162	nuclear chromosome segregation	NA
UHGV-0158225_9	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0158225_11	PHROG	phrog_13589	NA	unknown function
UHGV-0158225_11	eggNOG-mapper	428125.CLOLEP_01434	NA	NA
UHGV-0158225_12	eggNOG-mapper	428125.CLOLEP_01433	NA	NA
UHGV-0158225_16	PHROG	phrog_18444	NA	unknown function
UHGV-0158225_16	UniRef90	UniRef90_UPI0011788049	peptide chain release factor 2	NA
UHGV-0158225_16	eggNOG-mapper	1294142.CINTURNW_1707	NA	NA
UHGV-0158225_17	PHROG	phrog_6616	tail protein	tail
UHGV-0158225_17	eggNOG-mapper	411471.SUBVAR_06932	NA	NA
UHGV-0158225_17	Structural annotation	PF05954, PF00629, PF03424, NF033848, NF033675, COG4379	NA	NA
UHGV-0158225_18	PHROG	phrog_1194	NA	unknown function
UHGV-0158225_18	eggNOG-mapper	411471.SUBVAR_06933	NA	NA
UHGV-0158225_18	Structural annotation	PF20458, TIGR02126, COG4718	NA	NA
UHGV-0158225_19	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0158225_19	eggNOG-mapper	665956.HMPREF1032_03628	domain protein	NA
UHGV-0158225_19	COG	COG1511	NA	NA
UHGV-0158225_20	PHROG	phrog_706	NA	unknown function
UHGV-0158225_20	UniRef90	UniRef90_UPI0019576839	Gp15 family bacteriophage protein	NA
UHGV-0158225_20	eggNOG-mapper	1226322.HMPREF1545_00058	Bacteriophage Gp15 protein	NA
UHGV-0158225_20	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0158225_20	Structural annotation	PF06854	NA	NA
UHGV-0158225_21	PHROG	phrog_11299	NA	unknown function
UHGV-0158225_21	UniRef90	UniRef90_UPI001C03A209	V-type proton ATPase subunit E	NA
UHGV-0158225_21	eggNOG-mapper	411471.SUBVAR_06935	NA	NA
UHGV-0158225_22	PHROG	phrog_3099	NA	unknown function
UHGV-0158225_22	eggNOG-mapper	411471.SUBVAR_06936	NA	NA
UHGV-0158225_22	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0158225_23	PHROG	phrog_3266	tail completion	connector
UHGV-0158225_23	eggNOG-mapper	693746.OBV_18140	NA	NA
UHGV-0158225_23	Structural annotation	PF08873	NA	NA
UHGV-0158225_24	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0158225_24	UniRef90	UniRef90_UPI001967B4B3	minor capsid protein	NA
UHGV-0158225_24	eggNOG-mapper	1292035.H476_1011	Minor capsid protein	NA
UHGV-0158225_24	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0158225_24	Structural annotation	PF11114	NA	NA
UHGV-0158225_25	PHROG	phrog_3366	NA	unknown function
UHGV-0158225_25	Structural annotation	PF20536, MF_01370, TIGR02126	NA	NA
UHGV-0158225_26	eggNOG-mapper	693746.OBV_18110	NA	NA
UHGV-0158225_28	PHROG	phrog_422	major head protein	head and packaging
UHGV-0158225_28	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0158225_28	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0158225_29	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0158225_29	UniRef90	UniRef90_A0A4R1QTK7	Minor structural protein GP20	NA
UHGV-0158225_29	eggNOG-mapper	411471.SUBVAR_06994	Phage minor structural protein GP20	NA
UHGV-0158225_29	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0158225_29	Structural annotation	PF06810	NA	NA
UHGV-0158225_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0158225_32	UniRef90	UniRef90_UPI00196795ED	phage minor capsid protein	NA
UHGV-0158225_32	eggNOG-mapper	411471.SUBVAR_06995	NA	NA
UHGV-0158225_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0158225_32	COG	COG2369	NA	NA
UHGV-0158225_32	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0158225_33	PHROG	phrog_533	portal protein	head and packaging
UHGV-0158225_33	UniRef90	UniRef90_D1PRG7	Putative phage minor capsid protein	NA
UHGV-0158225_33	eggNOG-mapper	411471.SUBVAR_06996	NA	NA
UHGV-0158225_33	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0158225_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0158225_36	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0158225_36	UniRef90	UniRef90_D1PRG9	Phage terminase, large subunit, PBSX family	NA
UHGV-0158225_36	eggNOG-mapper	411471.SUBVAR_06998	Phage terminase, large subunit, PBSX family	NA
UHGV-0158225_36	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0158225_36	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0158225_36	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0158225_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-0158225_36	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0158225_37	PHROG	phrog_24579	terminase small subunit	head and packaging
UHGV-0158225_37	UniRef90	UniRef90_A0A1Y4TKH5	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-0158225_39	KOfam	K05785	rfaH; transcriptional antiterminator RfaH	NA
UHGV-0158225_39	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0158225_39	UniRef90	UniRef90_A0A2V2FE50	Antitermination protein NusG	NA
UHGV-0158225_39	eggNOG-mapper	411471.SUBVAR_07000	Transcription termination factor nusG	NA
UHGV-0158225_39	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0158225_39	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0158225_39	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0158225_40	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0158225_40	UniRef90	UniRef90_A0A6N8H2N8	NA	NA
UHGV-0158225_40	eggNOG-mapper	411471.SUBVAR_07001	NA	NA
UHGV-0158225_40	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0158225_40	Structural annotation	PF11985	NA	NA
UHGV-0158225_41	PHROG	phrog_25462	NA	unknown function
UHGV-0158225_41	UniRef90	UniRef90_A0A2V2FBL8	Type VI secretion protein	NA
UHGV-0158225_41	eggNOG-mapper	552398.HMPREF0866_03124	NA	NA
UHGV-0158225_41	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0158225_42	eggNOG-mapper	411471.SUBVAR_07003	NA	NA
UHGV-0158225_43	PHROG	phrog_836	late transcriptional activator	transcription regulation
UHGV-0158225_43	UniRef90	UniRef90_A0A2V2FI75	DNA-binding protein	NA
UHGV-0158225_43	eggNOG-mapper	411471.SUBVAR_07004	Mor transcription activator	NA
UHGV-0158225_43	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-0158225_43	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0158225_43	Structural annotation	PF08765, COG5566	NA	NA
UHGV-0158225_44	PHROG	phrog_286	NA	unknown function
UHGV-0158225_44	UniRef90	UniRef90_A0A2V2FEY3	Regulatory protein GemA	NA
UHGV-0158225_44	eggNOG-mapper	411471.SUBVAR_07005	NA	NA
UHGV-0158225_44	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-0158225_44	Structural annotation	PF06252	NA	NA
UHGV-0158225_45	PHROG	phrog_491	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0158225_45	UniRef90	UniRef90_D1PRH7	Putative bacteriophage Mu Gam like protein	NA
UHGV-0158225_45	eggNOG-mapper	411471.SUBVAR_07006	Bacteriophage Mu Gam like protein	NA
UHGV-0158225_45	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0158225_45	COG	COG4396	Mu-like prophage host-nuclease inhibitor protein Gam	NA
UHGV-0158225_45	Structural annotation	PF07352, COG4396	NA	NA
UHGV-0158225_48	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-0158225_48	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0158225_48	UniRef90	UniRef90_A0A2V2F8S2	DNA transposition protein	NA
UHGV-0158225_48	eggNOG-mapper	411471.SUBVAR_07009	AAA domain	NA
UHGV-0158225_48	Pfam	PF13401	AAA domain	AAA_22
UHGV-0158225_48	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0158225_48	Structural annotation	PF13401, PF09077, PF12844, MF_01407, TIGR03015, TIGR02607, COG2842	NA	NA
UHGV-0158225_49	PHROG	phrog_310	transposase	integration and excision
UHGV-0158225_49	UniRef90	UniRef90_D1PRI1	Mu transposase domain protein	NA
UHGV-0158225_49	eggNOG-mapper	411471.SUBVAR_07010	Mu transposase, C-terminal	NA
UHGV-0158225_49	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-0158225_49	Pfam	PF09039	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
UHGV-0158225_49	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-0158225_49	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0158225_49	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-0158225_54	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0158225_54	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0158225_54	UniRef90	UniRef90_A0A2V2FBS9	HTH cro/C1-type domain-containing protein	NA
UHGV-0158225_54	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0158225_54	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA