UHGV-0158244

Genome information

Genome length 22,899 bps

CDS count 54

Completeness 57.33% (medium-quality)

geNomad score 0.9829

Prediction confidence Confident

Genome information
Genome ID	UHGV-0158244
vOTU ID	vOTU-027846
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_486475
BioSample	NA
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.33% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9829
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.09
Jumbo phage	No

Genome content
Genome length	22,899 bps
GC content	53.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	94.15%
Average CDS length	405.17 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0158244_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0158244_2	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-0158244_5	PHROG	phrog_4973	NA	unknown function
UHGV-0158244_5	UniRef90	UniRef90_A0A3D3Y5F2	DNA-binding protein	NA
UHGV-0158244_5	eggNOG-mapper	935261.JAGL01000009_gene1175	Helix-turn-helix domain	NA
UHGV-0158244_5	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0158244_5	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0158244_7	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0158244_7	UniRef90	UniRef90_A0A845QLQ8	NA	NA
UHGV-0158244_7	eggNOG-mapper	445972.ANACOL_01823	NA	NA
UHGV-0158244_7	Pfam	PF06378	NA	DUF1071
UHGV-0158244_7	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0158244_8	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0158244_8	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-0158244_8	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0158244_9	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0158244_9	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0158244_9	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0158244_9	Structural annotation	PF05772	NA	NA
UHGV-0158244_10	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0158244_10	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0158244_10	UniRef90	UniRef90_A0A3D1LDS4	HNH domain-containing protein	NA
UHGV-0158244_10	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0158244_10	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0158244_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0158244_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0158244_12	UniRef90	UniRef90_R6LLA3	Single-stranded DNA-binding protein	NA
UHGV-0158244_12	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-0158244_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0158244_12	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0158244_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0158244_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0158244_12	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0158244_13	PHROG	phrog_9327	primosomal protein	DNA, RNA and nucleotide metabolism
UHGV-0158244_13	UniRef90	UniRef90_A0A7C1NSM7	NA	NA
UHGV-0158244_13	eggNOG-mapper	927704.SELR_18440	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0158244_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0158244_13	Structural annotation	PF07120, COG3756	NA	NA
UHGV-0158244_16	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0158244_16	UniRef90	UniRef90_A0A1V5ZUM0	Endodeoxyribonuclease RusA	NA
UHGV-0158244_16	eggNOG-mapper	556263.FSEG_00477	NA	NA
UHGV-0158244_16	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0158244_18	PHROG	phrog_1008	DNA methyltransferase	other
UHGV-0158244_18	UniRef90	UniRef90_A0A345KQM6	DNA cytosine methyltransferase	NA
UHGV-0158244_18	eggNOG-mapper	693746.OBV_01910	NA	NA
UHGV-0158244_19	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0158244_19	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0158244_19	UniRef90	UniRef90_A0A3D3Y454	Adenylyl-sulfate reductase	NA
UHGV-0158244_19	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0158244_19	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0158244_19	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0158244_19	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0158244_19	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0158244_20	PHROG	phrog_924	NA	unknown function
UHGV-0158244_20	UniRef90	UniRef90_A0A417H740	NA	NA
UHGV-0158244_20	Pfam	PF04448	NA	DUF551
UHGV-0158244_22	PHROG	phrog_38832	NA	unknown function
UHGV-0158244_22	eggNOG-mapper	1232443.BAIA02000078_gene48	NA	NA
UHGV-0158244_22	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-0158244_23	Structural annotation	PF12092	NA	NA
UHGV-0158244_24	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0158244_24	UniRef90	UniRef90_A0A417HX51	HNH endonuclease	NA
UHGV-0158244_24	eggNOG-mapper	1511.CLOST_1546	HNH endonuclease	NA
UHGV-0158244_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0158244_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0158244_24	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0158244_28	UniRef90	UniRef90_R6QWY1	28	NA
UHGV-0158244_28	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0158244_30	UniRef90	UniRef90_A0A374AB28	Thymidylate synthase ThyX	NA
UHGV-0158244_30	eggNOG-mapper	935948.KE386495_gene2250	NA	NA
UHGV-0158244_30	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0158244_30	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0158244_34	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0158244_34	UniRef90	UniRef90_A0A2K9P078	NA	NA
UHGV-0158244_34	eggNOG-mapper	1366055.S5MLS6_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-0158244_34	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0158244_34	Structural annotation	PF18909	NA	NA
UHGV-0158244_37	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0158244_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0158244_37	UniRef90	UniRef90_UPI0018989C77	helix-turn-helix domain-containing protein	NA
UHGV-0158244_37	eggNOG-mapper	1246484.D479_07192	Helix-turn-helix XRE-family like proteins	NA
UHGV-0158244_37	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0158244_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0158244_37	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0158244_37	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0158244_38	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0158244_38	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0158244_38	UniRef90	UniRef90_A0A810PZK9	ParB domain-containing protein	NA
UHGV-0158244_38	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0158244_38	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0158244_38	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0158244_38	COG	COG0863	DNA modification methylase	NA
UHGV-0158244_38	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0158244_39	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0158244_39	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0158244_39	UniRef90	UniRef90_A0A810Q3Z7	N6_N4_Mtase domain-containing protein	NA
UHGV-0158244_39	eggNOG-mapper	742823.HMPREF9465_00225	PFAM DNA methylase N-4 N-6	NA
UHGV-0158244_39	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0158244_39	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0158244_39	COG	COG0863	DNA modification methylase	NA
UHGV-0158244_39	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0158244_41	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0158244_41	PHROG	phrog_10250	NA	unknown function
UHGV-0158244_41	UniRef90	UniRef90_A0A1I3QR69	Phage terminase, large subunit, PBSX family	NA
UHGV-0158244_41	eggNOG-mapper	748224.HMPREF9436_03341	Phage terminase, large subunit, PBSX family	NA
UHGV-0158244_41	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0158244_41	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0158244_41	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0158244_41	COG	COG1783	Phage terminase large subunit	NA
UHGV-0158244_41	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0158244_42	PHROG	phrog_64	portal protein	head and packaging
UHGV-0158244_42	UniRef90	UniRef90_UPI001AA0B7FF	phage portal protein	NA
UHGV-0158244_42	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0158244_42	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0158244_42	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0158244_43	Structural annotation	PF08481, NF033814, COG5456	NA	NA
UHGV-0158244_46	PHROG	phrog_10898	NA	unknown function
UHGV-0158244_46	UniRef90	UniRef90_A0A7U3NJT3	Putative Ig-like domain-containing protein	NA
UHGV-0158244_46	eggNOG-mapper	717606.PaecuDRAFT_2136	S-layer homology domain	NA
UHGV-0158244_46	COG	COG1520	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	NA
UHGV-0158244_46	Structural annotation	PF19081, PF15418, MF_01905, NF032891, COG3291	NA	NA
UHGV-0158244_47	Structural annotation	PF16408, NF033510	NA	NA
UHGV-0158244_49	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0158244_49	UniRef90	UniRef90_A0A350TI55	NA	NA
UHGV-0158244_49	eggNOG-mapper	718252.FP2_16970	NA	NA
UHGV-0158244_49	Pfam	PF19789	NA	DUF6273
UHGV-0158244_49	Structural annotation	PF19789	NA	NA
UHGV-0158244_50	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0158244_50	Structural annotation	PF10618	NA	NA
UHGV-0158244_51	PHROG	phrog_27545	NA	unknown function
UHGV-0158244_51	UniRef90	UniRef90_D1PRE7	Glycosyl hydrolase, family 18 family protein	NA
UHGV-0158244_51	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0158244_51	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0158244_52	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0158244_52	UniRef90	UniRef90_A0A3D3Y165	Phage_Mu_F domain-containing protein	NA
UHGV-0158244_52	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0158244_52	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0158244_52	COG	COG2369	NA	NA
UHGV-0158244_52	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0158244_53	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0158244_53	UniRef90	UniRef90_A0A7X5E1T2	HK97 gp10 family phage protein	NA
UHGV-0158244_53	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0158244_53	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0158244_53	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0158244_53	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0158244_54	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0158244_54	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0158244_54	Structural annotation	PF06810	NA	NA